Wall clock time and date at job start Mon Mar 30 2020 03:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47500 * 2 1 4 4 C 1.50707 * 109.47253 * 120.00156 * 2 1 3 5 5 H 1.07999 * 119.99842 * 114.35739 * 4 2 1 6 6 C 1.37874 * 119.99753 * 294.36212 * 4 2 1 7 7 N 1.31518 * 119.99829 * 156.94431 * 6 4 2 8 8 Si 1.86805 * 120.00259 * 336.94046 * 6 4 2 9 9 H 1.48495 * 109.47077 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.46568 * 60.00265 * 8 6 4 11 11 H 1.48502 * 109.47078 * 300.00265 * 8 6 4 12 12 C 1.50703 * 109.47353 * 240.00433 * 2 1 3 13 13 C 1.36616 * 120.91912 * 300.00007 * 12 2 1 14 14 C 1.39284 * 119.93375 * 179.97438 * 13 12 2 15 15 N 1.31109 * 121.75476 * 0.03248 * 14 13 12 16 16 C 1.33658 * 121.31534 * 359.97438 * 15 14 13 17 17 C 1.40602 * 121.08157 * 179.97438 * 16 15 14 18 18 C 1.36064 * 119.75119 * 180.02562 * 17 16 15 19 19 C 1.39366 * 121.07138 * 0.02562 * 18 17 16 20 20 C 1.36136 * 120.87193 * 359.97438 * 19 18 17 21 21 C 1.40439 * 119.61298 * 359.72846 * 20 19 18 22 22 H 1.09004 * 109.47019 * 53.35376 * 1 2 3 23 23 H 1.08996 * 109.47475 * 173.35787 * 1 2 3 24 24 H 1.09004 * 109.47230 * 293.36131 * 1 2 3 25 25 H 0.96997 * 119.99762 * 354.92242 * 7 6 4 26 26 H 1.07998 * 120.03067 * 0.02562 * 13 12 2 27 27 H 1.08006 * 119.12736 * 180.02562 * 14 13 12 28 28 H 1.08001 * 120.12233 * 359.97438 * 17 16 15 29 29 H 1.08002 * 119.46664 * 179.97438 * 18 17 16 30 30 H 1.08003 * 119.56457 * 179.97438 * 19 18 17 31 31 H 1.08004 * 120.19376 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.5760 -1.6386 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8091 -0.9527 3.5403 8 14 1.4639 1.6531 2.6647 9 1 1.2455 1.9736 4.0981 10 1 0.2531 2.0165 1.8855 11 1 2.6283 2.4227 2.1577 12 6 2.0324 -0.7103 -1.2305 13 6 1.7139 -2.0179 -1.4655 14 6 2.1890 -2.6542 -2.6098 15 7 2.9438 -2.0315 -3.4825 16 6 3.2920 -0.7524 -3.3123 17 6 4.1021 -0.0896 -4.2511 18 6 4.4407 1.2129 -4.0507 19 6 3.9977 1.9063 -2.9258 20 6 3.2120 1.2984 -1.9950 21 6 2.8376 -0.0435 -2.1725 22 1 -0.3633 0.6134 -0.8246 23 1 -0.3634 -1.0207 -0.1189 24 1 -0.3634 0.4075 0.9434 25 1 1.9091 -1.9120 3.4377 26 1 1.0937 -2.5574 -0.7650 27 1 1.9289 -3.6881 -2.7828 28 1 4.4549 -0.6127 -5.1277 29 1 5.0635 1.7174 -4.7745 30 1 4.2815 2.9396 -2.7908 31 1 2.8745 1.8463 -1.1276 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259518353.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:34 Heat of formation + Delta-G solvation = 41.233817 kcal Electronic energy + Delta-G solvation = -15043.173714 eV Core-core repulsion = 12674.868365 eV Total energy + Delta-G solvation = -2368.305349 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.43244 -36.73493 -35.40650 -32.51624 -30.60442 -30.10460 -29.02832 -24.93698 -23.83691 -23.19347 -22.11120 -19.44181 -17.78805 -17.52256 -16.72453 -15.83887 -14.42563 -14.08550 -13.93343 -13.80436 -13.55946 -13.06124 -12.85492 -12.56870 -12.08690 -11.46172 -11.40984 -11.32316 -11.04502 -10.86222 -10.51910 -10.01290 -9.86425 -9.71673 -9.06219 -8.93428 -8.36220 -8.28487 -7.73024 -6.56565 -4.18231 0.88221 1.26946 2.51365 3.31447 3.35161 3.36021 3.53099 4.40924 4.58436 4.69490 4.98727 5.11042 5.14207 5.31985 5.45034 5.54309 5.59320 5.80409 5.93660 6.10821 6.31144 6.39572 6.48615 6.50092 6.59048 6.61221 6.68075 6.88286 7.02068 7.10006 7.29724 7.38968 7.93976 8.27471 8.36129 8.77822 9.46719 10.79299 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.029972 B = 0.009495 C = 0.007916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.996247 B = 2948.192929 C = 3536.114286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.043 3.957 3 H 0.035 0.965 4 C -0.601 4.601 5 H 0.060 0.940 6 C 0.041 3.959 7 N -0.893 5.893 8 Si 1.032 2.968 9 H -0.283 1.283 10 H -0.275 1.275 11 H -0.282 1.282 12 C 0.038 3.962 13 C -0.186 4.186 14 C 0.135 3.865 15 N -0.504 5.504 16 C 0.127 3.873 17 C -0.105 4.105 18 C -0.104 4.104 19 C -0.140 4.140 20 C -0.078 4.078 21 C -0.109 4.109 22 H 0.024 0.976 23 H 0.047 0.953 24 H 0.057 0.943 25 H 0.271 0.729 26 H 0.136 0.864 27 H 0.151 0.849 28 H 0.127 0.873 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.968 3.621 -11.720 12.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.024 3.976 3 H 0.052 0.948 4 C -0.639 4.639 5 H 0.078 0.922 6 C -0.166 4.166 7 N -0.525 5.525 8 Si 0.860 3.140 9 H -0.209 1.209 10 H -0.201 1.201 11 H -0.208 1.208 12 C 0.030 3.970 13 C -0.206 4.206 14 C -0.035 4.035 15 N -0.213 5.213 16 C 0.005 3.995 17 C -0.124 4.124 18 C -0.124 4.124 19 C -0.158 4.158 20 C -0.096 4.096 21 C -0.111 4.111 22 H 0.043 0.957 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.154 0.846 27 H 0.168 0.832 28 H 0.145 0.855 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.063 4.427 -11.368 12.245 hybrid contribution 0.044 -0.925 -0.287 0.969 sum 1.107 3.502 -11.655 12.220 Atomic orbital electron populations 1.22179 0.97460 1.00327 0.99858 1.18296 0.92697 0.95844 0.90774 0.94757 1.21823 1.41278 1.10677 0.90086 0.92158 1.25705 0.93199 1.05732 0.91942 1.70847 1.43343 1.06516 1.31824 0.84205 0.77326 0.76060 0.76446 1.20880 1.20095 1.20797 1.20669 0.89394 0.93782 0.93127 1.21694 1.04028 0.95891 0.98988 1.22857 0.91589 0.99347 0.89751 1.67979 1.14297 1.08538 1.30507 1.18866 0.96841 0.90313 0.93481 1.20664 0.98490 0.94489 0.98777 1.20788 0.99602 0.94376 0.97641 1.20818 0.99769 1.00183 0.95013 1.21242 0.96077 0.93620 0.98684 1.18907 1.00608 0.95499 0.96056 0.95675 0.93374 0.92447 0.91919 0.84640 0.83215 0.85480 0.86000 0.86033 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.83 37.16 0.33 -2.63 16 2 C 0.04 0.97 1.98 -92.92 -0.18 0.79 16 3 H 0.03 0.77 4.26 -51.93 -0.22 0.55 16 4 C -0.60 -16.10 8.51 -34.44 -0.29 -16.39 16 5 H 0.06 1.76 7.79 -52.49 -0.41 1.36 16 6 C 0.04 1.13 5.20 -17.82 -0.09 1.04 16 7 N -0.89 -26.34 13.70 55.43 0.76 -25.58 16 8 Si 1.03 23.89 26.44 -169.99 -4.50 19.40 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.27 -5.85 6.14 56.52 0.35 -5.51 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 C 0.04 0.81 4.77 -104.27 -0.50 0.31 16 13 C -0.19 -3.63 8.64 -39.78 -0.34 -3.98 16 14 C 0.14 2.38 11.14 -17.47 -0.19 2.18 16 15 N -0.50 -9.50 10.34 -10.98 -0.11 -9.61 16 16 C 0.13 2.40 6.60 -84.85 -0.56 1.84 16 17 C -0.11 -1.66 9.98 -39.47 -0.39 -2.05 16 18 C -0.10 -1.43 9.94 -39.94 -0.40 -1.83 16 19 C -0.14 -2.05 9.96 -39.92 -0.40 -2.44 16 20 C -0.08 -1.38 9.40 -39.51 -0.37 -1.75 16 21 C -0.11 -2.16 5.74 -106.80 -0.61 -2.78 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.97 7.24 -51.93 -0.38 0.60 16 24 H 0.06 1.25 5.46 -51.93 -0.28 0.96 16 25 H 0.27 7.96 8.73 -40.82 -0.36 7.60 16 26 H 0.14 2.59 7.59 -52.49 -0.40 2.19 16 27 H 0.15 2.07 8.06 -52.48 -0.42 1.65 16 28 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 31 H 0.13 2.34 6.02 -52.48 -0.32 2.02 16 LS Contribution 258.99 15.07 3.90 3.90 Total: -1.00 -29.76 258.99 -7.28 -37.04 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -3.32 Total: 2.55 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -4.01 Total: -27.69 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.65 Total: -35.20 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -4.50 Total: 19.40 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.76 -7.28 -37.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259518353.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.273 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds