Wall clock time and date at job start Mon Mar 30 2020 03:44:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08999 * 109.47500 * 2 1
4 4 C 1.50707 * 109.47253 * 120.00156 * 2 1 3
5 5 H 1.07999 * 119.99842 * 114.35739 * 4 2 1
6 6 C 1.37874 * 119.99753 * 294.36212 * 4 2 1
7 7 N 1.31518 * 119.99829 * 156.94431 * 6 4 2
8 8 Si 1.86805 * 120.00259 * 336.94046 * 6 4 2
9 9 H 1.48495 * 109.47077 * 180.02562 * 8 6 4
10 10 H 1.48498 * 109.46568 * 60.00265 * 8 6 4
11 11 H 1.48502 * 109.47078 * 300.00265 * 8 6 4
12 12 C 1.50703 * 109.47353 * 240.00433 * 2 1 3
13 13 C 1.36616 * 120.91912 * 300.00007 * 12 2 1
14 14 C 1.39284 * 119.93375 * 179.97438 * 13 12 2
15 15 N 1.31109 * 121.75476 * 0.03248 * 14 13 12
16 16 C 1.33658 * 121.31534 * 359.97438 * 15 14 13
17 17 C 1.40602 * 121.08157 * 179.97438 * 16 15 14
18 18 C 1.36064 * 119.75119 * 180.02562 * 17 16 15
19 19 C 1.39366 * 121.07138 * 0.02562 * 18 17 16
20 20 C 1.36136 * 120.87193 * 359.97438 * 19 18 17
21 21 C 1.40439 * 119.61298 * 359.72846 * 20 19 18
22 22 H 1.09004 * 109.47019 * 53.35376 * 1 2 3
23 23 H 1.08996 * 109.47475 * 173.35787 * 1 2 3
24 24 H 1.09004 * 109.47230 * 293.36131 * 1 2 3
25 25 H 0.96997 * 119.99762 * 354.92242 * 7 6 4
26 26 H 1.07998 * 120.03067 * 0.02562 * 13 12 2
27 27 H 1.08006 * 119.12736 * 180.02562 * 14 13 12
28 28 H 1.08001 * 120.12233 * 359.97438 * 17 16 15
29 29 H 1.08002 * 119.46664 * 179.97438 * 18 17 16
30 30 H 1.08003 * 119.56457 * 179.97438 * 19 18 17
31 31 H 1.08004 * 120.19376 * 180.02562 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7105 1.2305
5 1 2.5760 -1.6386 1.1339
6 6 1.7978 -0.1755 2.4794
7 7 1.8091 -0.9527 3.5403
8 14 1.4639 1.6531 2.6647
9 1 1.2455 1.9736 4.0981
10 1 0.2531 2.0165 1.8855
11 1 2.6283 2.4227 2.1577
12 6 2.0324 -0.7103 -1.2305
13 6 1.7139 -2.0179 -1.4655
14 6 2.1890 -2.6542 -2.6098
15 7 2.9438 -2.0315 -3.4825
16 6 3.2920 -0.7524 -3.3123
17 6 4.1021 -0.0896 -4.2511
18 6 4.4407 1.2129 -4.0507
19 6 3.9977 1.9063 -2.9258
20 6 3.2120 1.2984 -1.9950
21 6 2.8376 -0.0435 -2.1725
22 1 -0.3633 0.6134 -0.8246
23 1 -0.3634 -1.0207 -0.1189
24 1 -0.3634 0.4075 0.9434
25 1 1.9091 -1.9120 3.4377
26 1 1.0937 -2.5574 -0.7650
27 1 1.9289 -3.6881 -2.7828
28 1 4.4549 -0.6127 -5.1277
29 1 5.0635 1.7174 -4.7745
30 1 4.2815 2.9396 -2.7908
31 1 2.8745 1.8463 -1.1276
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259518353.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:44:34
Heat of formation + Delta-G solvation = 41.233817 kcal
Electronic energy + Delta-G solvation = -15043.173714 eV
Core-core repulsion = 12674.868365 eV
Total energy + Delta-G solvation = -2368.305349 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 227.101 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.43244 -36.73493 -35.40650 -32.51624 -30.60442 -30.10460 -29.02832 -24.93698
-23.83691 -23.19347 -22.11120 -19.44181 -17.78805 -17.52256 -16.72453 -15.83887
-14.42563 -14.08550 -13.93343 -13.80436 -13.55946 -13.06124 -12.85492 -12.56870
-12.08690 -11.46172 -11.40984 -11.32316 -11.04502 -10.86222 -10.51910 -10.01290
-9.86425 -9.71673 -9.06219 -8.93428 -8.36220 -8.28487 -7.73024 -6.56565
-4.18231 0.88221 1.26946 2.51365 3.31447 3.35161 3.36021 3.53099
4.40924 4.58436 4.69490 4.98727 5.11042 5.14207 5.31985 5.45034
5.54309 5.59320 5.80409 5.93660 6.10821 6.31144 6.39572 6.48615
6.50092 6.59048 6.61221 6.68075 6.88286 7.02068 7.10006 7.29724
7.38968 7.93976 8.27471 8.36129 8.77822 9.46719 10.79299
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.029972 B = 0.009495 C = 0.007916
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 933.996247 B = 2948.192929 C = 3536.114286
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.043 3.957
3 H 0.035 0.965
4 C -0.601 4.601
5 H 0.060 0.940
6 C 0.041 3.959
7 N -0.893 5.893
8 Si 1.032 2.968
9 H -0.283 1.283
10 H -0.275 1.275
11 H -0.282 1.282
12 C 0.038 3.962
13 C -0.186 4.186
14 C 0.135 3.865
15 N -0.504 5.504
16 C 0.127 3.873
17 C -0.105 4.105
18 C -0.104 4.104
19 C -0.140 4.140
20 C -0.078 4.078
21 C -0.109 4.109
22 H 0.024 0.976
23 H 0.047 0.953
24 H 0.057 0.943
25 H 0.271 0.729
26 H 0.136 0.864
27 H 0.151 0.849
28 H 0.127 0.873
29 H 0.122 0.878
30 H 0.122 0.878
31 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.968 3.621 -11.720 12.305
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C 0.024 3.976
3 H 0.052 0.948
4 C -0.639 4.639
5 H 0.078 0.922
6 C -0.166 4.166
7 N -0.525 5.525
8 Si 0.860 3.140
9 H -0.209 1.209
10 H -0.201 1.201
11 H -0.208 1.208
12 C 0.030 3.970
13 C -0.206 4.206
14 C -0.035 4.035
15 N -0.213 5.213
16 C 0.005 3.995
17 C -0.124 4.124
18 C -0.124 4.124
19 C -0.158 4.158
20 C -0.096 4.096
21 C -0.111 4.111
22 H 0.043 0.957
23 H 0.066 0.934
24 H 0.076 0.924
25 H 0.081 0.919
26 H 0.154 0.846
27 H 0.168 0.832
28 H 0.145 0.855
29 H 0.140 0.860
30 H 0.140 0.860
31 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges 1.063 4.427 -11.368 12.245
hybrid contribution 0.044 -0.925 -0.287 0.969
sum 1.107 3.502 -11.655 12.220
Atomic orbital electron populations
1.22179 0.97460 1.00327 0.99858 1.18296 0.92697 0.95844 0.90774
0.94757 1.21823 1.41278 1.10677 0.90086 0.92158 1.25705 0.93199
1.05732 0.91942 1.70847 1.43343 1.06516 1.31824 0.84205 0.77326
0.76060 0.76446 1.20880 1.20095 1.20797 1.20669 0.89394 0.93782
0.93127 1.21694 1.04028 0.95891 0.98988 1.22857 0.91589 0.99347
0.89751 1.67979 1.14297 1.08538 1.30507 1.18866 0.96841 0.90313
0.93481 1.20664 0.98490 0.94489 0.98777 1.20788 0.99602 0.94376
0.97641 1.20818 0.99769 1.00183 0.95013 1.21242 0.96077 0.93620
0.98684 1.18907 1.00608 0.95499 0.96056 0.95675 0.93374 0.92447
0.91919 0.84640 0.83215 0.85480 0.86000 0.86033 0.84844
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.96 8.83 37.16 0.33 -2.63 16
2 C 0.04 0.97 1.98 -92.92 -0.18 0.79 16
3 H 0.03 0.77 4.26 -51.93 -0.22 0.55 16
4 C -0.60 -16.10 8.51 -34.44 -0.29 -16.39 16
5 H 0.06 1.76 7.79 -52.49 -0.41 1.36 16
6 C 0.04 1.13 5.20 -17.82 -0.09 1.04 16
7 N -0.89 -26.34 13.70 55.43 0.76 -25.58 16
8 Si 1.03 23.89 26.44 -169.99 -4.50 19.40 16
9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
10 H -0.27 -5.85 6.14 56.52 0.35 -5.51 16
11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
12 C 0.04 0.81 4.77 -104.27 -0.50 0.31 16
13 C -0.19 -3.63 8.64 -39.78 -0.34 -3.98 16
14 C 0.14 2.38 11.14 -17.47 -0.19 2.18 16
15 N -0.50 -9.50 10.34 -10.98 -0.11 -9.61 16
16 C 0.13 2.40 6.60 -84.85 -0.56 1.84 16
17 C -0.11 -1.66 9.98 -39.47 -0.39 -2.05 16
18 C -0.10 -1.43 9.94 -39.94 -0.40 -1.83 16
19 C -0.14 -2.05 9.96 -39.92 -0.40 -2.44 16
20 C -0.08 -1.38 9.40 -39.51 -0.37 -1.75 16
21 C -0.11 -2.16 5.74 -106.80 -0.61 -2.78 16
22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
23 H 0.05 0.97 7.24 -51.93 -0.38 0.60 16
24 H 0.06 1.25 5.46 -51.93 -0.28 0.96 16
25 H 0.27 7.96 8.73 -40.82 -0.36 7.60 16
26 H 0.14 2.59 7.59 -52.49 -0.40 2.19 16
27 H 0.15 2.07 8.06 -52.48 -0.42 1.65 16
28 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16
29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16
30 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16
31 H 0.13 2.34 6.02 -52.48 -0.32 2.02 16
LS Contribution 258.99 15.07 3.90 3.90
Total: -1.00 -29.76 258.99 -7.28 -37.04
By element:
Atomic # 1 Polarization: 5.88 SS G_CDS: -3.32 Total: 2.55 kcal
Atomic # 6 Polarization: -23.68 SS G_CDS: -4.01 Total: -27.69 kcal
Atomic # 7 Polarization: -35.84 SS G_CDS: 0.65 Total: -35.20 kcal
Atomic # 14 Polarization: 23.89 SS G_CDS: -4.50 Total: 19.40 kcal
Total LS contribution 3.90 Total: 3.90 kcal
Total: -29.76 -7.28 -37.04 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259518353.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.273 kcal
(2) G-P(sol) polarization free energy of solvation -29.757 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.516 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.039 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.234 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds