Wall clock time and date at job start Mon Mar 30 2020 03:44:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08999 * 109.47500 * 2 1
4 4 C 1.50707 * 109.47253 * 120.00156 * 2 1 3
5 5 H 1.07999 * 119.99842 * 114.35739 * 4 2 1
6 6 C 1.37874 * 119.99753 * 294.36212 * 4 2 1
7 7 N 1.31518 * 119.99829 * 156.94431 * 6 4 2
8 8 Si 1.86805 * 120.00259 * 336.94046 * 6 4 2
9 9 H 1.48495 * 109.47077 * 180.02562 * 8 6 4
10 10 H 1.48498 * 109.46568 * 60.00265 * 8 6 4
11 11 H 1.48502 * 109.47078 * 300.00265 * 8 6 4
12 12 C 1.50703 * 109.47353 * 240.00433 * 2 1 3
13 13 C 1.36616 * 120.91912 * 300.00007 * 12 2 1
14 14 C 1.39284 * 119.93375 * 179.97438 * 13 12 2
15 15 N 1.31109 * 121.75476 * 0.03248 * 14 13 12
16 16 C 1.33658 * 121.31534 * 359.97438 * 15 14 13
17 17 C 1.40602 * 121.08157 * 179.97438 * 16 15 14
18 18 C 1.36064 * 119.75119 * 180.02562 * 17 16 15
19 19 C 1.39366 * 121.07138 * 0.02562 * 18 17 16
20 20 C 1.36136 * 120.87193 * 359.97438 * 19 18 17
21 21 C 1.40439 * 119.61298 * 359.72846 * 20 19 18
22 22 H 1.09004 * 109.47019 * 53.35376 * 1 2 3
23 23 H 1.08996 * 109.47475 * 173.35787 * 1 2 3
24 24 H 1.09004 * 109.47230 * 293.36131 * 1 2 3
25 25 H 0.96997 * 119.99762 * 354.92242 * 7 6 4
26 26 H 1.07998 * 120.03067 * 0.02562 * 13 12 2
27 27 H 1.08006 * 119.12736 * 180.02562 * 14 13 12
28 28 H 1.08001 * 120.12233 * 359.97438 * 17 16 15
29 29 H 1.08002 * 119.46664 * 179.97438 * 18 17 16
30 30 H 1.08003 * 119.56457 * 179.97438 * 19 18 17
31 31 H 1.08004 * 120.19376 * 180.02562 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7105 1.2305
5 1 2.5760 -1.6386 1.1339
6 6 1.7978 -0.1755 2.4794
7 7 1.8091 -0.9527 3.5403
8 14 1.4639 1.6531 2.6647
9 1 1.2455 1.9736 4.0981
10 1 0.2531 2.0165 1.8855
11 1 2.6283 2.4227 2.1577
12 6 2.0324 -0.7103 -1.2305
13 6 1.7139 -2.0179 -1.4655
14 6 2.1890 -2.6542 -2.6098
15 7 2.9438 -2.0315 -3.4825
16 6 3.2920 -0.7524 -3.3123
17 6 4.1021 -0.0896 -4.2511
18 6 4.4407 1.2129 -4.0507
19 6 3.9977 1.9063 -2.9258
20 6 3.2120 1.2984 -1.9950
21 6 2.8376 -0.0435 -2.1725
22 1 -0.3633 0.6134 -0.8246
23 1 -0.3634 -1.0207 -0.1189
24 1 -0.3634 0.4075 0.9434
25 1 1.9091 -1.9120 3.4377
26 1 1.0937 -2.5574 -0.7650
27 1 1.9289 -3.6881 -2.7828
28 1 4.4549 -0.6127 -5.1277
29 1 5.0635 1.7174 -4.7745
30 1 4.2815 2.9396 -2.7908
31 1 2.8745 1.8463 -1.1276
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259518353.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:44:33
Heat of formation + Delta-G solvation = 23.587794 kcal
Electronic energy + Delta-G solvation = -15043.938903 eV
Core-core repulsion = 12674.868365 eV
Total energy + Delta-G solvation = -2369.070538 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 227.101 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.80479 -38.04248 -37.06965 -34.41857 -32.16694 -31.42109 -30.46599 -26.85913
-25.31746 -24.54656 -23.60026 -21.06595 -19.66707 -18.88915 -18.17511 -17.28247
-15.88635 -15.65626 -15.40581 -15.17701 -15.04129 -14.64532 -14.48273 -14.12665
-13.77639 -13.21615 -12.75987 -12.67794 -12.54904 -12.33177 -12.16195 -11.74411
-11.65745 -11.33067 -10.92294 -10.41147 -10.38890 -9.66509 -9.12352 -8.72051
-6.37132 -0.45828 -0.06652 1.11409 1.46489 1.52144 1.71439 2.08091
2.48664 2.98680 3.20859 3.42880 3.68147 3.89328 3.98090 4.07534
4.29879 4.36177 4.46873 4.55237 4.65118 4.72123 4.83373 5.02380
5.04683 5.14719 5.21773 5.34445 5.44991 5.52619 5.62339 5.78888
5.96534 6.00429 6.06494 6.53926 6.95402 7.36029 8.58799
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.029972 B = 0.009495 C = 0.007916
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 933.996247 B = 2948.192929 C = 3536.114286
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.044 3.956
3 H 0.043 0.957
4 C -0.599 4.599
5 H 0.018 0.982
6 C -0.009 4.009
7 N -0.928 5.928
8 Si 1.070 2.930
9 H -0.289 1.289
10 H -0.243 1.243
11 H -0.261 1.261
12 C 0.008 3.992
13 C -0.196 4.196
14 C 0.132 3.868
15 N -0.509 5.509
16 C 0.101 3.899
17 C -0.114 4.114
18 C -0.089 4.089
19 C -0.120 4.120
20 C -0.110 4.110
21 C -0.128 4.128
22 H 0.051 0.949
23 H 0.044 0.956
24 H 0.048 0.952
25 H 0.255 0.745
26 H 0.127 0.873
27 H 0.185 0.815
28 H 0.148 0.852
29 H 0.169 0.831
30 H 0.159 0.841
31 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.617 5.987 -14.258 15.549
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.025 3.975
3 H 0.061 0.939
4 C -0.636 4.636
5 H 0.036 0.964
6 C -0.208 4.208
7 N -0.563 5.563
8 Si 0.891 3.109
9 H -0.215 1.215
10 H -0.167 1.167
11 H -0.186 1.186
12 C 0.000 4.000
13 C -0.216 4.216
14 C -0.039 4.039
15 N -0.218 5.218
16 C -0.020 4.020
17 C -0.133 4.133
18 C -0.108 4.108
19 C -0.137 4.137
20 C -0.129 4.129
21 C -0.130 4.130
22 H 0.070 0.930
23 H 0.064 0.936
24 H 0.067 0.933
25 H 0.064 0.936
26 H 0.145 0.855
27 H 0.202 0.798
28 H 0.165 0.835
29 H 0.186 0.814
30 H 0.177 0.823
31 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 1.715 6.789 -13.939 15.599
hybrid contribution -0.049 -1.695 0.376 1.737
sum 1.666 5.094 -13.563 14.583
Atomic orbital electron populations
1.22074 0.96136 1.00772 1.00411 1.18189 0.93680 0.95842 0.89773
0.93878 1.21931 1.40133 1.09241 0.92312 0.96388 1.27106 0.92613
1.09402 0.91703 1.70975 1.46589 1.05767 1.32952 0.83749 0.79342
0.71197 0.76642 1.21535 1.16672 1.18628 1.20644 0.91250 0.94610
0.93509 1.21767 1.04368 0.95754 0.99758 1.23278 0.91096 1.00687
0.88805 1.68048 1.14299 1.08873 1.30605 1.19357 0.97863 0.90567
0.94213 1.21013 0.97937 0.95527 0.98776 1.21312 0.98370 0.93484
0.97685 1.21304 0.97007 1.01701 0.93719 1.21347 0.98319 0.93093
1.00114 1.19093 1.00882 0.96731 0.96268 0.93010 0.93648 0.93264
0.93649 0.85500 0.79821 0.83472 0.81378 0.82305 0.85288
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.66 8.83 71.98 0.64 -5.03 16
2 C 0.04 2.01 1.98 -12.28 -0.02 1.99 16
3 H 0.04 1.90 4.26 -2.39 -0.01 1.89 16
4 C -0.60 -33.24 8.51 25.60 0.22 -33.02 16
5 H 0.02 1.11 7.79 -2.91 -0.02 1.09 16
6 C -0.01 -0.49 5.20 84.65 0.44 -0.05 16
7 N -0.93 -56.99 13.70 21.45 0.29 -56.69 16
8 Si 1.07 47.69 26.44 68.60 1.81 49.50 16
9 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16
10 H -0.24 -9.51 6.14 99.48 0.61 -8.90 16
11 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16
12 C 0.01 0.34 4.77 -19.64 -0.09 0.24 16
13 C -0.20 -7.89 8.64 22.14 0.19 -7.69 16
14 C 0.13 4.62 11.14 85.05 0.95 5.57 16
15 N -0.51 -18.70 10.34 -188.64 -1.95 -20.65 16
16 C 0.10 3.69 6.60 40.30 0.27 3.96 16
17 C -0.11 -3.21 9.98 22.34 0.22 -2.99 16
18 C -0.09 -2.01 9.94 22.04 0.22 -1.79 16
19 C -0.12 -2.99 9.96 22.05 0.22 -2.77 16
20 C -0.11 -3.69 9.40 22.32 0.21 -3.48 16
21 C -0.13 -5.00 5.74 -21.28 -0.12 -5.12 16
22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16
23 H 0.04 1.86 7.24 -2.39 -0.02 1.84 16
24 H 0.05 2.09 5.46 -2.38 -0.01 2.07 16
25 H 0.25 15.90 8.73 -92.71 -0.81 15.09 16
26 H 0.13 5.13 7.59 -2.91 -0.02 5.11 16
27 H 0.18 4.89 8.06 -2.91 -0.02 4.87 16
28 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16
29 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16
30 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16
31 H 0.13 4.32 6.02 -2.91 -0.02 4.30 16
Total: -1.00 -67.28 258.99 4.49 -62.80
By element:
Atomic # 1 Polarization: 14.24 SS G_CDS: 1.00 Total: 15.24 kcal
Atomic # 6 Polarization: -53.52 SS G_CDS: 3.33 Total: -50.19 kcal
Atomic # 7 Polarization: -75.69 SS G_CDS: -1.66 Total: -77.35 kcal
Atomic # 14 Polarization: 47.69 SS G_CDS: 1.81 Total: 49.50 kcal
Total: -67.28 4.49 -62.80 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259518353.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.384 kcal
(2) G-P(sol) polarization free energy of solvation -67.282 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.102 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.486 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.796 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.588 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds