Wall clock time and date at job start Mon Mar 30 2020 03:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47500 * 2 1 4 4 C 1.50707 * 109.47253 * 120.00156 * 2 1 3 5 5 H 1.07999 * 119.99842 * 114.35739 * 4 2 1 6 6 C 1.37874 * 119.99753 * 294.36212 * 4 2 1 7 7 N 1.31518 * 119.99829 * 156.94431 * 6 4 2 8 8 Si 1.86805 * 120.00259 * 336.94046 * 6 4 2 9 9 H 1.48495 * 109.47077 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.46568 * 60.00265 * 8 6 4 11 11 H 1.48502 * 109.47078 * 300.00265 * 8 6 4 12 12 C 1.50703 * 109.47353 * 240.00433 * 2 1 3 13 13 C 1.36616 * 120.91912 * 300.00007 * 12 2 1 14 14 C 1.39284 * 119.93375 * 179.97438 * 13 12 2 15 15 N 1.31109 * 121.75476 * 0.03248 * 14 13 12 16 16 C 1.33658 * 121.31534 * 359.97438 * 15 14 13 17 17 C 1.40602 * 121.08157 * 179.97438 * 16 15 14 18 18 C 1.36064 * 119.75119 * 180.02562 * 17 16 15 19 19 C 1.39366 * 121.07138 * 0.02562 * 18 17 16 20 20 C 1.36136 * 120.87193 * 359.97438 * 19 18 17 21 21 C 1.40439 * 119.61298 * 359.72846 * 20 19 18 22 22 H 1.09004 * 109.47019 * 53.35376 * 1 2 3 23 23 H 1.08996 * 109.47475 * 173.35787 * 1 2 3 24 24 H 1.09004 * 109.47230 * 293.36131 * 1 2 3 25 25 H 0.96997 * 119.99762 * 354.92242 * 7 6 4 26 26 H 1.07998 * 120.03067 * 0.02562 * 13 12 2 27 27 H 1.08006 * 119.12736 * 180.02562 * 14 13 12 28 28 H 1.08001 * 120.12233 * 359.97438 * 17 16 15 29 29 H 1.08002 * 119.46664 * 179.97438 * 18 17 16 30 30 H 1.08003 * 119.56457 * 179.97438 * 19 18 17 31 31 H 1.08004 * 120.19376 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.5760 -1.6386 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8091 -0.9527 3.5403 8 14 1.4639 1.6531 2.6647 9 1 1.2455 1.9736 4.0981 10 1 0.2531 2.0165 1.8855 11 1 2.6283 2.4227 2.1577 12 6 2.0324 -0.7103 -1.2305 13 6 1.7139 -2.0179 -1.4655 14 6 2.1890 -2.6542 -2.6098 15 7 2.9438 -2.0315 -3.4825 16 6 3.2920 -0.7524 -3.3123 17 6 4.1021 -0.0896 -4.2511 18 6 4.4407 1.2129 -4.0507 19 6 3.9977 1.9063 -2.9258 20 6 3.2120 1.2984 -1.9950 21 6 2.8376 -0.0435 -2.1725 22 1 -0.3633 0.6134 -0.8246 23 1 -0.3634 -1.0207 -0.1189 24 1 -0.3634 0.4075 0.9434 25 1 1.9091 -1.9120 3.4377 26 1 1.0937 -2.5574 -0.7650 27 1 1.9289 -3.6881 -2.7828 28 1 4.4549 -0.6127 -5.1277 29 1 5.0635 1.7174 -4.7745 30 1 4.2815 2.9396 -2.7908 31 1 2.8745 1.8463 -1.1276 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259518353.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:33 Heat of formation + Delta-G solvation = 23.587794 kcal Electronic energy + Delta-G solvation = -15043.938903 eV Core-core repulsion = 12674.868365 eV Total energy + Delta-G solvation = -2369.070538 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.80479 -38.04248 -37.06965 -34.41857 -32.16694 -31.42109 -30.46599 -26.85913 -25.31746 -24.54656 -23.60026 -21.06595 -19.66707 -18.88915 -18.17511 -17.28247 -15.88635 -15.65626 -15.40581 -15.17701 -15.04129 -14.64532 -14.48273 -14.12665 -13.77639 -13.21615 -12.75987 -12.67794 -12.54904 -12.33177 -12.16195 -11.74411 -11.65745 -11.33067 -10.92294 -10.41147 -10.38890 -9.66509 -9.12352 -8.72051 -6.37132 -0.45828 -0.06652 1.11409 1.46489 1.52144 1.71439 2.08091 2.48664 2.98680 3.20859 3.42880 3.68147 3.89328 3.98090 4.07534 4.29879 4.36177 4.46873 4.55237 4.65118 4.72123 4.83373 5.02380 5.04683 5.14719 5.21773 5.34445 5.44991 5.52619 5.62339 5.78888 5.96534 6.00429 6.06494 6.53926 6.95402 7.36029 8.58799 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.029972 B = 0.009495 C = 0.007916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.996247 B = 2948.192929 C = 3536.114286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.044 3.956 3 H 0.043 0.957 4 C -0.599 4.599 5 H 0.018 0.982 6 C -0.009 4.009 7 N -0.928 5.928 8 Si 1.070 2.930 9 H -0.289 1.289 10 H -0.243 1.243 11 H -0.261 1.261 12 C 0.008 3.992 13 C -0.196 4.196 14 C 0.132 3.868 15 N -0.509 5.509 16 C 0.101 3.899 17 C -0.114 4.114 18 C -0.089 4.089 19 C -0.120 4.120 20 C -0.110 4.110 21 C -0.128 4.128 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.048 0.952 25 H 0.255 0.745 26 H 0.127 0.873 27 H 0.185 0.815 28 H 0.148 0.852 29 H 0.169 0.831 30 H 0.159 0.841 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 5.987 -14.258 15.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.025 3.975 3 H 0.061 0.939 4 C -0.636 4.636 5 H 0.036 0.964 6 C -0.208 4.208 7 N -0.563 5.563 8 Si 0.891 3.109 9 H -0.215 1.215 10 H -0.167 1.167 11 H -0.186 1.186 12 C 0.000 4.000 13 C -0.216 4.216 14 C -0.039 4.039 15 N -0.218 5.218 16 C -0.020 4.020 17 C -0.133 4.133 18 C -0.108 4.108 19 C -0.137 4.137 20 C -0.129 4.129 21 C -0.130 4.130 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.145 0.855 27 H 0.202 0.798 28 H 0.165 0.835 29 H 0.186 0.814 30 H 0.177 0.823 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.715 6.789 -13.939 15.599 hybrid contribution -0.049 -1.695 0.376 1.737 sum 1.666 5.094 -13.563 14.583 Atomic orbital electron populations 1.22074 0.96136 1.00772 1.00411 1.18189 0.93680 0.95842 0.89773 0.93878 1.21931 1.40133 1.09241 0.92312 0.96388 1.27106 0.92613 1.09402 0.91703 1.70975 1.46589 1.05767 1.32952 0.83749 0.79342 0.71197 0.76642 1.21535 1.16672 1.18628 1.20644 0.91250 0.94610 0.93509 1.21767 1.04368 0.95754 0.99758 1.23278 0.91096 1.00687 0.88805 1.68048 1.14299 1.08873 1.30605 1.19357 0.97863 0.90567 0.94213 1.21013 0.97937 0.95527 0.98776 1.21312 0.98370 0.93484 0.97685 1.21304 0.97007 1.01701 0.93719 1.21347 0.98319 0.93093 1.00114 1.19093 1.00882 0.96731 0.96268 0.93010 0.93648 0.93264 0.93649 0.85500 0.79821 0.83472 0.81378 0.82305 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.66 8.83 71.98 0.64 -5.03 16 2 C 0.04 2.01 1.98 -12.28 -0.02 1.99 16 3 H 0.04 1.90 4.26 -2.39 -0.01 1.89 16 4 C -0.60 -33.24 8.51 25.60 0.22 -33.02 16 5 H 0.02 1.11 7.79 -2.91 -0.02 1.09 16 6 C -0.01 -0.49 5.20 84.65 0.44 -0.05 16 7 N -0.93 -56.99 13.70 21.45 0.29 -56.69 16 8 Si 1.07 47.69 26.44 68.60 1.81 49.50 16 9 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 10 H -0.24 -9.51 6.14 99.48 0.61 -8.90 16 11 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 12 C 0.01 0.34 4.77 -19.64 -0.09 0.24 16 13 C -0.20 -7.89 8.64 22.14 0.19 -7.69 16 14 C 0.13 4.62 11.14 85.05 0.95 5.57 16 15 N -0.51 -18.70 10.34 -188.64 -1.95 -20.65 16 16 C 0.10 3.69 6.60 40.30 0.27 3.96 16 17 C -0.11 -3.21 9.98 22.34 0.22 -2.99 16 18 C -0.09 -2.01 9.94 22.04 0.22 -1.79 16 19 C -0.12 -2.99 9.96 22.05 0.22 -2.77 16 20 C -0.11 -3.69 9.40 22.32 0.21 -3.48 16 21 C -0.13 -5.00 5.74 -21.28 -0.12 -5.12 16 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.04 1.86 7.24 -2.39 -0.02 1.84 16 24 H 0.05 2.09 5.46 -2.38 -0.01 2.07 16 25 H 0.25 15.90 8.73 -92.71 -0.81 15.09 16 26 H 0.13 5.13 7.59 -2.91 -0.02 5.11 16 27 H 0.18 4.89 8.06 -2.91 -0.02 4.87 16 28 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 31 H 0.13 4.32 6.02 -2.91 -0.02 4.30 16 Total: -1.00 -67.28 258.99 4.49 -62.80 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.00 Total: 15.24 kcal Atomic # 6 Polarization: -53.52 SS G_CDS: 3.33 Total: -50.19 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -1.66 Total: -77.35 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.81 Total: 49.50 kcal Total: -67.28 4.49 -62.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259518353.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.384 kcal (2) G-P(sol) polarization free energy of solvation -67.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds