Wall clock time and date at job start Mon Mar 30 2020 03:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99962 * 2 1 4 4 H 1.48495 * 109.47464 * 270.00145 * 3 2 1 5 5 H 1.48504 * 109.47169 * 30.00444 * 3 2 1 6 6 H 1.48502 * 109.47341 * 150.00013 * 3 2 1 7 7 C 1.37879 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00516 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99562 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.16926 * 300.72515 * 9 7 2 11 11 C 1.52625 * 109.17080 * 60.00320 * 9 7 2 12 12 C 1.53425 * 107.82830 * 178.97070 * 11 9 7 13 13 C 1.52509 * 107.94968 * 299.04556 * 12 11 9 14 14 N 1.47417 * 111.27340 * 60.73624 * 13 12 11 15 15 C 1.47429 * 106.70405 * 178.63208 * 14 13 12 16 16 C 1.52766 * 111.23583 * 195.38091 * 15 14 13 17 17 S 1.82054 * 107.66231 * 296.48779 * 16 15 14 18 18 C 1.81537 * 101.26995 * 52.76908 * 17 16 15 19 19 C 1.46287 * 112.69664 * 302.72925 * 14 13 12 20 20 H 1.08993 * 109.52969 * 291.82639 * 19 14 13 21 21 H 0.97000 * 120.00167 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.79429 * 59.38602 * 11 9 7 23 23 H 1.09002 * 109.83522 * 298.57096 * 11 9 7 24 24 H 1.09003 * 109.76956 * 179.43151 * 12 11 9 25 25 H 1.08999 * 109.81109 * 58.68021 * 12 11 9 26 26 H 1.09002 * 109.11855 * 300.27653 * 13 12 11 27 27 H 1.08993 * 109.06910 * 181.16592 * 13 12 11 28 28 H 1.09004 * 109.12711 * 74.92850 * 15 14 13 29 29 H 1.08998 * 109.12921 * 315.83163 * 15 14 13 30 30 H 1.08997 * 109.81756 * 56.03307 * 16 15 14 31 31 H 1.09001 * 109.82120 * 176.94708 * 16 15 14 32 32 H 1.08997 * 109.44875 * 188.02303 * 18 17 16 33 33 H 1.09000 * 109.42162 * 68.10185 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6169 -2.5463 0.8848 11 6 0.3758 -2.5726 -1.2487 12 6 -0.3558 -3.9211 -1.2308 13 6 0.6949 -5.0262 -1.2585 14 7 1.5806 -4.9518 -0.0825 15 6 2.5277 -6.0761 -0.1934 16 6 3.2413 -6.3315 1.1330 17 16 4.2305 -4.8533 1.5215 18 6 2.9797 -3.5443 1.3883 19 6 2.2542 -3.6586 0.0360 20 1 2.9715 -3.5457 -0.7768 21 1 -0.4850 0.8400 0.0004 22 1 0.9983 -2.5023 -2.1407 23 1 -0.3497 -1.7591 -1.2401 24 1 -0.9999 -4.0027 -2.1064 25 1 -0.9545 -4.0045 -0.3238 26 1 1.2941 -4.9265 -2.1636 27 1 0.1936 -5.9939 -1.2672 28 1 3.2685 -5.8449 -0.9588 29 1 1.9832 -6.9743 -0.4847 30 1 2.5074 -6.5027 1.9204 31 1 3.8943 -7.1993 1.0403 32 1 3.4645 -2.5707 1.4589 33 1 2.2573 -3.6495 2.1977 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259522430.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:29 Heat of formation + Delta-G solvation = -8.564895 kcal Electronic energy + Delta-G solvation = -14635.852084 eV Core-core repulsion = 12400.831252 eV Total energy + Delta-G solvation = -2235.020832 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.73009 -34.37238 -32.59882 -31.48581 -29.36942 -26.72282 -24.81946 -22.93435 -21.52028 -20.56958 -18.73828 -16.54006 -16.07533 -15.18095 -14.64005 -14.47770 -13.83817 -13.61511 -13.13927 -12.92189 -12.65176 -12.42513 -12.02183 -11.52078 -11.24739 -11.09424 -10.98335 -10.74200 -10.46483 -10.25498 -9.89606 -9.85885 -9.51982 -8.93414 -8.70138 -8.35744 -7.87259 -7.27248 -6.04503 -4.11300 2.26128 3.00238 3.27773 3.35035 3.38047 4.23308 4.43210 5.14900 5.25387 5.33656 5.41907 5.56244 5.69893 5.75796 5.87774 5.92246 6.06433 6.08899 6.26736 6.30695 6.54682 6.59443 6.71055 6.81689 7.13504 7.26249 7.52894 7.61218 7.69077 7.94006 8.07827 8.37363 8.91492 9.53513 11.01060 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.029622 B = 0.010334 C = 0.008020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.013063 B = 2708.919441 C = 3490.334477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.060 3.940 10 H 0.035 0.965 11 C -0.111 4.111 12 C -0.122 4.122 13 C 0.063 3.937 14 N -0.534 5.534 15 C 0.046 3.954 16 C -0.068 4.068 17 S -0.316 6.316 18 C -0.045 4.045 19 C 0.096 3.904 20 H 0.041 0.959 21 H 0.261 0.739 22 H 0.032 0.968 23 H 0.096 0.904 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.025 0.975 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.186 -9.717 -0.723 9.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.040 3.960 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.160 4.160 13 C -0.065 4.065 14 N -0.259 5.259 15 C -0.083 4.083 16 C -0.217 4.217 17 S -0.088 6.088 18 C -0.193 4.193 19 C -0.013 4.013 20 H 0.059 0.941 21 H 0.071 0.929 22 H 0.051 0.949 23 H 0.114 0.886 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.136 0.864 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.886 -9.565 0.012 9.991 hybrid contribution -0.263 0.908 -1.005 1.379 sum 2.623 -8.658 -0.992 9.101 Atomic orbital electron populations 1.69875 1.05855 1.26493 1.50265 1.24915 0.94821 0.98986 0.94947 0.86627 0.79946 0.83551 0.78121 1.20727 1.21214 1.19852 1.21155 0.92815 0.90387 1.51190 0.92564 1.18743 0.92204 0.89820 0.95265 0.94708 1.21671 0.99788 0.95205 0.98245 1.21700 0.96961 0.96610 1.00689 1.22016 0.94830 0.99083 0.90540 1.62278 1.19566 1.03185 1.40917 1.22322 0.95172 0.95407 0.95447 1.23317 1.00627 0.97216 1.00540 1.86711 1.23144 1.05825 1.93163 1.23791 0.97027 0.97595 1.00884 1.21986 0.96411 0.88768 0.94143 0.94070 0.92939 0.94896 0.88601 0.93113 0.91884 0.95672 0.92191 0.94040 0.90666 0.89453 0.88365 0.86385 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.47 11.32 55.43 0.63 -23.84 16 2 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.50 7.60 -34.44 -0.26 -13.76 16 8 H 0.06 1.46 6.95 -52.49 -0.36 1.10 16 9 C 0.06 1.43 1.57 -91.78 -0.14 1.29 16 10 H 0.03 0.93 8.09 -51.93 -0.42 0.51 16 11 C -0.11 -2.53 5.06 -26.70 -0.14 -2.67 16 12 C -0.12 -2.30 6.13 -26.76 -0.16 -2.46 16 13 C 0.06 1.08 5.08 -3.79 -0.02 1.06 16 14 N -0.53 -9.69 4.72 -225.93 -1.07 -10.76 16 15 C 0.05 0.70 5.08 -3.65 -0.02 0.68 16 16 C -0.07 -0.98 6.73 37.04 0.25 -0.74 16 17 S -0.32 -5.52 22.42 -107.50 -2.41 -7.93 16 18 C -0.04 -0.89 5.52 37.62 0.21 -0.68 16 19 C 0.10 1.99 1.75 -67.40 -0.12 1.88 16 20 H 0.04 0.92 8.04 -51.93 -0.42 0.50 16 21 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 22 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.10 2.45 6.10 -51.93 -0.32 2.14 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.02 0.43 8.13 -51.93 -0.42 0.01 16 27 H 0.06 0.88 7.84 -51.93 -0.41 0.48 16 28 H 0.04 0.66 8.02 -51.93 -0.42 0.24 16 29 H 0.08 0.97 7.67 -51.93 -0.40 0.57 16 30 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.12 2.49 6.58 -51.93 -0.34 2.15 16 33 H 0.08 1.67 8.13 -51.92 -0.42 1.25 16 LS Contribution 263.70 15.07 3.97 3.97 Total: -1.00 -26.72 263.70 -9.57 -36.29 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.18 Total: 0.24 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -0.50 Total: -13.77 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: -0.44 Total: -34.60 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: -5.52 SS G_CDS: -2.41 Total: -7.93 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -26.72 -9.57 -36.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259522430.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.722 kcal (2) G-P(sol) polarization free energy of solvation -26.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds