Wall clock time and date at job start Mon Mar 30 2020 03:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99962 * 2 1 4 4 H 1.48495 * 109.47464 * 270.00145 * 3 2 1 5 5 H 1.48504 * 109.47169 * 30.00444 * 3 2 1 6 6 H 1.48502 * 109.47341 * 150.00013 * 3 2 1 7 7 C 1.37879 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00516 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99562 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.16926 * 300.72515 * 9 7 2 11 11 C 1.52625 * 109.17080 * 60.00320 * 9 7 2 12 12 C 1.53425 * 107.82830 * 178.97070 * 11 9 7 13 13 C 1.52509 * 107.94968 * 299.04556 * 12 11 9 14 14 N 1.47417 * 111.27340 * 60.73624 * 13 12 11 15 15 C 1.47429 * 106.70405 * 178.63208 * 14 13 12 16 16 C 1.52766 * 111.23583 * 195.38091 * 15 14 13 17 17 S 1.82054 * 107.66231 * 296.48779 * 16 15 14 18 18 C 1.81537 * 101.26995 * 52.76908 * 17 16 15 19 19 C 1.46287 * 112.69664 * 302.72925 * 14 13 12 20 20 H 1.08993 * 109.52969 * 291.82639 * 19 14 13 21 21 H 0.97000 * 120.00167 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.79429 * 59.38602 * 11 9 7 23 23 H 1.09002 * 109.83522 * 298.57096 * 11 9 7 24 24 H 1.09003 * 109.76956 * 179.43151 * 12 11 9 25 25 H 1.08999 * 109.81109 * 58.68021 * 12 11 9 26 26 H 1.09002 * 109.11855 * 300.27653 * 13 12 11 27 27 H 1.08993 * 109.06910 * 181.16592 * 13 12 11 28 28 H 1.09004 * 109.12711 * 74.92850 * 15 14 13 29 29 H 1.08998 * 109.12921 * 315.83163 * 15 14 13 30 30 H 1.08997 * 109.81756 * 56.03307 * 16 15 14 31 31 H 1.09001 * 109.82120 * 176.94708 * 16 15 14 32 32 H 1.08997 * 109.44875 * 188.02303 * 18 17 16 33 33 H 1.09000 * 109.42162 * 68.10185 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6169 -2.5463 0.8848 11 6 0.3758 -2.5726 -1.2487 12 6 -0.3558 -3.9211 -1.2308 13 6 0.6949 -5.0262 -1.2585 14 7 1.5806 -4.9518 -0.0825 15 6 2.5277 -6.0761 -0.1934 16 6 3.2413 -6.3315 1.1330 17 16 4.2305 -4.8533 1.5215 18 6 2.9797 -3.5443 1.3883 19 6 2.2542 -3.6586 0.0360 20 1 2.9715 -3.5457 -0.7768 21 1 -0.4850 0.8400 0.0004 22 1 0.9983 -2.5023 -2.1407 23 1 -0.3497 -1.7591 -1.2401 24 1 -0.9999 -4.0027 -2.1064 25 1 -0.9545 -4.0045 -0.3238 26 1 1.2941 -4.9265 -2.1636 27 1 0.1936 -5.9939 -1.2672 28 1 3.2685 -5.8449 -0.9588 29 1 1.9832 -6.9743 -0.4847 30 1 2.5074 -6.5027 1.9204 31 1 3.8943 -7.1993 1.0403 32 1 3.4645 -2.5707 1.4589 33 1 2.2573 -3.6495 2.1977 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259522430.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:28 Heat of formation + Delta-G solvation = -24.363004 kcal Electronic energy + Delta-G solvation = -14636.537141 eV Core-core repulsion = 12400.831252 eV Total energy + Delta-G solvation = -2235.705889 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.27926 -36.06112 -34.23947 -33.24273 -30.81685 -28.43866 -26.65065 -24.36834 -23.14818 -22.08386 -20.42502 -18.51751 -17.51973 -16.72849 -16.29195 -16.13489 -15.27645 -15.09509 -14.71919 -14.52791 -14.21506 -13.97548 -13.62332 -13.00350 -12.88267 -12.78220 -12.59862 -12.57698 -12.16669 -11.89007 -11.69507 -11.53924 -11.13511 -10.79492 -10.36966 -10.34844 -9.32011 -8.67710 -8.09814 -6.22809 0.90841 1.39285 1.41246 1.50181 1.59792 2.40697 2.90494 3.18084 3.90529 3.93319 4.13580 4.22375 4.27726 4.33642 4.45035 4.60523 4.61608 4.74234 4.80154 4.86034 4.92749 4.94874 5.11484 5.17443 5.36800 5.47413 5.62370 5.91378 6.01046 6.15661 6.18575 6.41904 6.87400 7.44510 8.94407 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.029622 B = 0.010334 C = 0.008020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.013063 B = 2708.919441 C = 3490.334477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.019 3.981 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.062 3.938 10 H -0.001 1.001 11 C -0.108 4.108 12 C -0.115 4.115 13 C 0.064 3.936 14 N -0.544 5.544 15 C 0.045 3.955 16 C -0.059 4.059 17 S -0.323 6.323 18 C -0.043 4.043 19 C 0.112 3.888 20 H 0.023 0.977 21 H 0.260 0.740 22 H 0.023 0.977 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.028 0.972 27 H 0.098 0.902 28 H 0.037 0.963 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.095 0.905 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 -11.826 -1.168 12.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.773 3.227 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.069 0.931 9 C 0.042 3.958 10 H 0.017 0.983 11 C -0.146 4.146 12 C -0.152 4.152 13 C -0.063 4.063 14 N -0.269 5.269 15 C -0.084 4.084 16 C -0.207 4.207 17 S -0.096 6.096 18 C -0.191 4.191 19 C 0.002 3.998 20 H 0.041 0.959 21 H 0.070 0.930 22 H 0.042 0.958 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.116 0.884 28 H 0.056 0.944 29 H 0.130 0.870 30 H 0.111 0.889 31 H 0.152 0.848 32 H 0.113 0.887 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.420 -11.688 -0.435 12.185 hybrid contribution -0.428 1.497 -0.860 1.779 sum 2.992 -10.190 -1.295 10.699 Atomic orbital electron populations 1.70005 1.06989 1.27050 1.51104 1.25618 0.95581 1.01982 0.94884 0.85718 0.78831 0.79953 0.78156 1.20287 1.20923 1.19491 1.21458 0.92753 0.91839 1.50729 0.93146 1.18620 0.92408 0.90677 0.94128 0.98256 1.21500 0.99052 0.96871 0.97191 1.21609 0.97453 0.94855 1.01308 1.22075 0.94203 0.99891 0.90166 1.62282 1.20356 1.02579 1.41718 1.22449 0.94981 0.95265 0.95700 1.23501 1.00744 0.96120 1.00307 1.86701 1.22881 1.06670 1.93341 1.23499 0.97443 0.98107 1.00096 1.21615 0.94958 0.89406 0.93867 0.95887 0.93029 0.95773 0.91821 0.90722 0.92888 0.95417 0.88423 0.94434 0.86965 0.88886 0.84837 0.88664 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.00 11.32 21.45 0.24 -51.75 16 2 C 0.02 1.01 5.30 84.66 0.45 1.46 16 3 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.53 -28.64 7.60 25.60 0.19 -28.44 16 8 H 0.05 2.72 6.95 -2.92 -0.02 2.70 16 9 C 0.06 3.06 1.57 -11.54 -0.02 3.04 16 10 H 0.00 -0.04 8.09 -2.39 -0.02 -0.06 16 11 C -0.11 -5.04 5.06 30.61 0.15 -4.88 16 12 C -0.11 -4.20 6.13 30.57 0.19 -4.01 16 13 C 0.06 2.00 5.08 86.04 0.44 2.44 16 14 N -0.54 -18.64 4.72 -868.70 -4.10 -22.74 16 15 C 0.04 1.19 5.08 86.12 0.44 1.63 16 16 C -0.06 -1.47 6.73 71.90 0.48 -0.98 16 17 S -0.32 -10.82 22.42 -56.49 -1.27 -12.09 16 18 C -0.04 -1.73 5.52 72.28 0.40 -1.33 16 19 C 0.11 4.65 1.75 45.45 0.08 4.73 16 20 H 0.02 1.04 8.04 -2.39 -0.02 1.02 16 21 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 22 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.06 3.38 6.10 -2.39 -0.01 3.37 16 24 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.03 0.87 8.13 -2.39 -0.02 0.85 16 27 H 0.10 2.39 7.84 -2.39 -0.02 2.37 16 28 H 0.04 1.05 8.02 -2.39 -0.02 1.03 16 29 H 0.11 2.23 7.67 -2.39 -0.02 2.21 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.10 4.20 6.58 -2.39 -0.02 4.18 16 33 H 0.07 3.01 8.13 -2.39 -0.02 2.99 16 Total: -1.00 -59.20 263.70 0.78 -58.42 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.07 Total: 8.94 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 2.80 Total: -26.36 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -3.86 Total: -74.49 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -10.82 SS G_CDS: -1.27 Total: -12.09 kcal Total: -59.20 0.78 -58.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259522430.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.060 kcal (2) G-P(sol) polarization free energy of solvation -59.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds