Wall clock time and date at job start Mon Mar 30 2020 03:01:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86797 * 119.99962 * 2 1
4 4 H 1.48495 * 109.47464 * 270.00145 * 3 2 1
5 5 H 1.48504 * 109.47169 * 30.00444 * 3 2 1
6 6 H 1.48502 * 109.47341 * 150.00013 * 3 2 1
7 7 C 1.37879 * 120.00456 * 180.02562 * 2 1 3
8 8 H 1.07990 * 120.00516 * 179.97438 * 7 2 1
9 9 C 1.50708 * 119.99562 * 359.97438 * 7 2 1
10 10 H 1.09003 * 109.16926 * 300.72515 * 9 7 2
11 11 C 1.52625 * 109.17080 * 60.00320 * 9 7 2
12 12 C 1.53425 * 107.82830 * 178.97070 * 11 9 7
13 13 C 1.52509 * 107.94968 * 299.04556 * 12 11 9
14 14 N 1.47417 * 111.27340 * 60.73624 * 13 12 11
15 15 C 1.47429 * 106.70405 * 178.63208 * 14 13 12
16 16 C 1.52766 * 111.23583 * 195.38091 * 15 14 13
17 17 S 1.82054 * 107.66231 * 296.48779 * 16 15 14
18 18 C 1.81537 * 101.26995 * 52.76908 * 17 16 15
19 19 C 1.46287 * 112.69664 * 302.72925 * 14 13 12
20 20 H 1.08993 * 109.52969 * 291.82639 * 19 14 13
21 21 H 0.97000 * 120.00167 * 359.97438 * 1 2 3
22 22 H 1.08993 * 109.79429 * 59.38602 * 11 9 7
23 23 H 1.09002 * 109.83522 * 298.57096 * 11 9 7
24 24 H 1.09003 * 109.76956 * 179.43151 * 12 11 9
25 25 H 1.08999 * 109.81109 * 58.68021 * 12 11 9
26 26 H 1.09002 * 109.11855 * 300.27653 * 13 12 11
27 27 H 1.08993 * 109.06910 * 181.16592 * 13 12 11
28 28 H 1.09004 * 109.12711 * 74.92850 * 15 14 13
29 29 H 1.08998 * 109.12921 * 315.83163 * 15 14 13
30 30 H 1.08997 * 109.81756 * 56.03307 * 16 15 14
31 31 H 1.09001 * 109.82120 * 176.94708 * 16 15 14
32 32 H 1.08997 * 109.44875 * 188.02303 * 18 17 16
33 33 H 1.09000 * 109.42162 * 68.10185 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0465 -1.4000
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4402 0.7000
7 6 2.0046 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 1 0.6169 -2.5463 0.8848
11 6 0.3758 -2.5726 -1.2487
12 6 -0.3558 -3.9211 -1.2308
13 6 0.6949 -5.0262 -1.2585
14 7 1.5806 -4.9518 -0.0825
15 6 2.5277 -6.0761 -0.1934
16 6 3.2413 -6.3315 1.1330
17 16 4.2305 -4.8533 1.5215
18 6 2.9797 -3.5443 1.3883
19 6 2.2542 -3.6586 0.0360
20 1 2.9715 -3.5457 -0.7768
21 1 -0.4850 0.8400 0.0004
22 1 0.9983 -2.5023 -2.1407
23 1 -0.3497 -1.7591 -1.2401
24 1 -0.9999 -4.0027 -2.1064
25 1 -0.9545 -4.0045 -0.3238
26 1 1.2941 -4.9265 -2.1636
27 1 0.1936 -5.9939 -1.2672
28 1 3.2685 -5.8449 -0.9588
29 1 1.9832 -6.9743 -0.4847
30 1 2.5074 -6.5027 1.9204
31 1 3.8943 -7.1993 1.0403
32 1 3.4645 -2.5707 1.4589
33 1 2.2573 -3.6495 2.1977
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259522430.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:01:28
Heat of formation + Delta-G solvation = -24.363004 kcal
Electronic energy + Delta-G solvation = -14636.537141 eV
Core-core repulsion = 12400.831252 eV
Total energy + Delta-G solvation = -2235.705889 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 227.104 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.27926 -36.06112 -34.23947 -33.24273 -30.81685 -28.43866 -26.65065 -24.36834
-23.14818 -22.08386 -20.42502 -18.51751 -17.51973 -16.72849 -16.29195 -16.13489
-15.27645 -15.09509 -14.71919 -14.52791 -14.21506 -13.97548 -13.62332 -13.00350
-12.88267 -12.78220 -12.59862 -12.57698 -12.16669 -11.89007 -11.69507 -11.53924
-11.13511 -10.79492 -10.36966 -10.34844 -9.32011 -8.67710 -8.09814 -6.22809
0.90841 1.39285 1.41246 1.50181 1.59792 2.40697 2.90494 3.18084
3.90529 3.93319 4.13580 4.22375 4.27726 4.33642 4.45035 4.60523
4.61608 4.74234 4.80154 4.86034 4.92749 4.94874 5.11484 5.17443
5.36800 5.47413 5.62370 5.91378 6.01046 6.15661 6.18575 6.41904
6.87400 7.44510 8.94407
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.029622 B = 0.010334 C = 0.008020
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 945.013063 B = 2708.919441 C = 3490.334477
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C 0.019 3.981
3 Si 0.947 3.053
4 H -0.277 1.277
5 H -0.284 1.284
6 H -0.270 1.270
7 C -0.529 4.529
8 H 0.050 0.950
9 C 0.062 3.938
10 H -0.001 1.001
11 C -0.108 4.108
12 C -0.115 4.115
13 C 0.064 3.936
14 N -0.544 5.544
15 C 0.045 3.955
16 C -0.059 4.059
17 S -0.323 6.323
18 C -0.043 4.043
19 C 0.112 3.888
20 H 0.023 0.977
21 H 0.260 0.740
22 H 0.023 0.977
23 H 0.063 0.937
24 H 0.074 0.926
25 H 0.052 0.948
26 H 0.028 0.972
27 H 0.098 0.902
28 H 0.037 0.963
29 H 0.112 0.888
30 H 0.092 0.908
31 H 0.134 0.866
32 H 0.095 0.905
33 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.713 -11.826 -1.168 12.189
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.551 5.551
2 C -0.181 4.181
3 Si 0.773 3.227
4 H -0.203 1.203
5 H -0.209 1.209
6 H -0.195 1.195
7 C -0.568 4.568
8 H 0.069 0.931
9 C 0.042 3.958
10 H 0.017 0.983
11 C -0.146 4.146
12 C -0.152 4.152
13 C -0.063 4.063
14 N -0.269 5.269
15 C -0.084 4.084
16 C -0.207 4.207
17 S -0.096 6.096
18 C -0.191 4.191
19 C 0.002 3.998
20 H 0.041 0.959
21 H 0.070 0.930
22 H 0.042 0.958
23 H 0.082 0.918
24 H 0.093 0.907
25 H 0.071 0.929
26 H 0.046 0.954
27 H 0.116 0.884
28 H 0.056 0.944
29 H 0.130 0.870
30 H 0.111 0.889
31 H 0.152 0.848
32 H 0.113 0.887
33 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 3.420 -11.688 -0.435 12.185
hybrid contribution -0.428 1.497 -0.860 1.779
sum 2.992 -10.190 -1.295 10.699
Atomic orbital electron populations
1.70005 1.06989 1.27050 1.51104 1.25618 0.95581 1.01982 0.94884
0.85718 0.78831 0.79953 0.78156 1.20287 1.20923 1.19491 1.21458
0.92753 0.91839 1.50729 0.93146 1.18620 0.92408 0.90677 0.94128
0.98256 1.21500 0.99052 0.96871 0.97191 1.21609 0.97453 0.94855
1.01308 1.22075 0.94203 0.99891 0.90166 1.62282 1.20356 1.02579
1.41718 1.22449 0.94981 0.95265 0.95700 1.23501 1.00744 0.96120
1.00307 1.86701 1.22881 1.06670 1.93341 1.23499 0.97443 0.98107
1.00096 1.21615 0.94958 0.89406 0.93867 0.95887 0.93029 0.95773
0.91821 0.90722 0.92888 0.95417 0.88423 0.94434 0.86965 0.88886
0.84837 0.88664 0.90906
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -52.00 11.32 21.45 0.24 -51.75 16
2 C 0.02 1.01 5.30 84.66 0.45 1.46 16
3 Si 0.95 43.55 29.54 68.60 2.03 45.58 16
4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16
5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16
6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16
7 C -0.53 -28.64 7.60 25.60 0.19 -28.44 16
8 H 0.05 2.72 6.95 -2.92 -0.02 2.70 16
9 C 0.06 3.06 1.57 -11.54 -0.02 3.04 16
10 H 0.00 -0.04 8.09 -2.39 -0.02 -0.06 16
11 C -0.11 -5.04 5.06 30.61 0.15 -4.88 16
12 C -0.11 -4.20 6.13 30.57 0.19 -4.01 16
13 C 0.06 2.00 5.08 86.04 0.44 2.44 16
14 N -0.54 -18.64 4.72 -868.70 -4.10 -22.74 16
15 C 0.04 1.19 5.08 86.12 0.44 1.63 16
16 C -0.06 -1.47 6.73 71.90 0.48 -0.98 16
17 S -0.32 -10.82 22.42 -56.49 -1.27 -12.09 16
18 C -0.04 -1.73 5.52 72.28 0.40 -1.33 16
19 C 0.11 4.65 1.75 45.45 0.08 4.73 16
20 H 0.02 1.04 8.04 -2.39 -0.02 1.02 16
21 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16
22 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16
23 H 0.06 3.38 6.10 -2.39 -0.01 3.37 16
24 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16
25 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16
26 H 0.03 0.87 8.13 -2.39 -0.02 0.85 16
27 H 0.10 2.39 7.84 -2.39 -0.02 2.37 16
28 H 0.04 1.05 8.02 -2.39 -0.02 1.03 16
29 H 0.11 2.23 7.67 -2.39 -0.02 2.21 16
30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16
31 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16
32 H 0.10 4.20 6.58 -2.39 -0.02 4.18 16
33 H 0.07 3.01 8.13 -2.39 -0.02 2.99 16
Total: -1.00 -59.20 263.70 0.78 -58.42
By element:
Atomic # 1 Polarization: 7.87 SS G_CDS: 1.07 Total: 8.94 kcal
Atomic # 6 Polarization: -29.16 SS G_CDS: 2.80 Total: -26.36 kcal
Atomic # 7 Polarization: -70.63 SS G_CDS: -3.86 Total: -74.49 kcal
Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal
Atomic # 16 Polarization: -10.82 SS G_CDS: -1.27 Total: -12.09 kcal
Total: -59.20 0.78 -58.42 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259522430.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.060 kcal
(2) G-P(sol) polarization free energy of solvation -59.199 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.139 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.423 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.363 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds