Wall clock time and date at job start Mon Mar 30 2020 03:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.17283 * 60.00218 * 9 7 2 11 11 C 1.52628 * 109.17672 * 300.72482 * 9 7 2 12 12 C 1.52991 * 108.05683 * 181.14639 * 11 9 7 13 13 C 1.52505 * 107.97191 * 60.84794 * 12 11 9 14 14 N 1.47423 * 111.27648 * 299.34149 * 13 12 11 15 15 C 1.47390 * 106.85362 * 181.51078 * 14 13 12 16 16 C 1.52753 * 111.41826 * 164.82497 * 15 14 13 17 17 S 1.82059 * 107.66429 * 63.43649 * 16 15 14 18 18 C 1.81539 * 101.26819 * 307.23000 * 17 16 15 19 19 C 1.46278 * 112.69308 * 57.27475 * 14 13 12 20 20 H 1.09001 * 109.53128 * 68.16331 * 19 14 13 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.78471 * 300.55469 * 11 9 7 23 23 H 1.08996 * 109.79079 * 61.39032 * 11 9 7 24 24 H 1.08999 * 109.68287 * 301.26948 * 12 11 9 25 25 H 1.08988 * 109.86323 * 180.52826 * 12 11 9 26 26 H 1.09000 * 109.11566 * 178.88422 * 13 12 11 27 27 H 1.09001 * 109.07023 * 59.77369 * 13 12 11 28 28 H 1.08997 * 109.09035 * 44.27570 * 15 14 13 29 29 H 1.09000 * 108.92326 * 285.25846 * 15 14 13 30 30 H 1.09003 * 109.82006 * 303.89316 * 16 15 14 31 31 H 1.09007 * 109.86903 * 183.00795 * 16 15 14 32 32 H 1.09003 * 109.44818 * 291.87663 * 18 17 16 33 33 H 1.08998 * 109.42061 * 171.95984 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6259 -2.5516 -0.8920 11 6 0.3630 -2.5653 1.2390 12 6 -0.3669 -3.9099 1.2283 13 6 0.6827 -5.0154 1.2735 14 7 1.5780 -4.9512 0.1040 15 6 2.5225 -6.0760 0.2268 16 6 3.2504 -6.3394 -1.0901 17 16 4.2451 -4.8643 -1.4762 18 6 2.9940 -3.5536 -1.3642 19 6 2.2535 -3.6597 -0.0194 20 1 2.9642 -3.5405 0.7984 21 1 -0.4850 0.8401 0.0004 22 1 0.9766 -2.4909 2.1369 23 1 -0.3616 -1.7513 1.2178 24 1 -0.9577 -3.9996 0.3167 25 1 -1.0185 -3.9845 2.0987 26 1 0.1814 -5.9832 1.2866 27 1 1.2745 -4.9076 2.1825 28 1 1.9741 -6.9721 0.5172 29 1 3.2550 -5.8399 0.9987 30 1 2.5251 -6.5145 -1.8847 31 1 3.9015 -7.2075 -0.9863 32 1 2.2804 -3.6622 -2.1810 33 1 3.4808 -2.5809 -1.4347 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259522432.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:31 Heat of formation + Delta-G solvation = -8.495850 kcal Electronic energy + Delta-G solvation = -14636.969834 eV Core-core repulsion = 12401.951996 eV Total energy + Delta-G solvation = -2235.017838 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.73460 -34.38072 -32.61125 -31.48879 -29.37353 -26.72619 -24.82223 -22.94127 -21.52134 -20.56056 -18.73384 -16.53999 -16.07811 -15.18198 -14.63901 -14.48133 -13.84526 -13.61074 -13.14233 -12.92410 -12.65717 -12.42452 -12.02415 -11.52878 -11.24403 -11.10096 -10.98315 -10.74055 -10.46461 -10.25156 -9.89046 -9.85049 -9.51932 -8.93945 -8.69949 -8.35694 -7.86336 -7.27418 -6.04332 -4.11339 2.25895 2.99986 3.27739 3.34992 3.38013 4.22854 4.43035 5.14899 5.25301 5.33360 5.42075 5.56235 5.70206 5.75767 5.87824 5.92087 6.06527 6.08993 6.26682 6.30722 6.55190 6.59903 6.71556 6.82616 7.13807 7.26852 7.53298 7.61767 7.69142 7.94257 8.08777 8.37621 8.91374 9.53479 11.00921 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.029651 B = 0.010330 C = 0.008017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.090034 B = 2709.832363 C = 3491.708022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.060 3.940 10 H 0.034 0.966 11 C -0.112 4.112 12 C -0.121 4.121 13 C 0.064 3.936 14 N -0.535 5.535 15 C 0.047 3.953 16 C -0.068 4.068 17 S -0.316 6.316 18 C -0.045 4.045 19 C 0.097 3.903 20 H 0.041 0.959 21 H 0.261 0.739 22 H 0.032 0.968 23 H 0.097 0.903 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.075 0.925 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 -9.703 0.759 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.040 3.960 10 H 0.052 0.948 11 C -0.150 4.150 12 C -0.159 4.159 13 C -0.064 4.064 14 N -0.260 5.260 15 C -0.083 4.083 16 C -0.217 4.217 17 S -0.088 6.088 18 C -0.193 4.193 19 C -0.013 4.013 20 H 0.059 0.941 21 H 0.071 0.929 22 H 0.050 0.950 23 H 0.115 0.885 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.043 0.957 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.879 -9.557 0.036 9.981 hybrid contribution -0.268 0.911 0.995 1.376 sum 2.611 -8.645 1.031 9.090 Atomic orbital electron populations 1.69871 1.05855 1.26476 1.50287 1.24918 0.94825 0.98993 0.94946 0.86623 0.79939 0.83533 0.78119 1.20728 1.19852 1.21213 1.21156 0.92814 0.90387 1.51169 0.92561 1.18737 0.92147 0.89811 0.95295 0.94767 1.21606 0.99870 0.95321 0.98207 1.21622 0.96959 0.96623 1.00716 1.22012 0.94724 0.99090 0.90579 1.62179 1.19308 1.03258 1.41302 1.22300 0.95140 0.95373 0.95467 1.23314 1.00533 0.97236 1.00612 1.86714 1.22775 1.05938 1.93412 1.23794 0.96975 0.97579 1.00973 1.21975 0.96341 0.88789 0.94186 0.94101 0.92941 0.94964 0.88452 0.91914 0.93093 0.92192 0.95686 0.90662 0.94079 0.89460 0.88344 0.89904 0.86386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.46 11.27 55.43 0.62 -23.83 16 2 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -13.50 7.63 -34.44 -0.26 -13.77 16 8 H 0.06 1.46 6.92 -52.49 -0.36 1.10 16 9 C 0.06 1.44 1.59 -91.78 -0.15 1.30 16 10 H 0.03 0.91 8.09 -51.93 -0.42 0.49 16 11 C -0.11 -2.56 5.02 -26.93 -0.14 -2.69 16 12 C -0.12 -2.29 6.12 -26.99 -0.17 -2.46 16 13 C 0.06 1.09 5.09 -3.79 -0.02 1.07 16 14 N -0.54 -9.72 4.72 -225.97 -1.07 -10.79 16 15 C 0.05 0.71 5.08 -3.68 -0.02 0.69 16 16 C -0.07 -0.98 6.74 37.03 0.25 -0.73 16 17 S -0.32 -5.51 22.42 -107.50 -2.41 -7.92 16 18 C -0.05 -0.90 5.52 37.62 0.21 -0.69 16 19 C 0.10 2.00 1.74 -67.40 -0.12 1.88 16 20 H 0.04 0.91 8.04 -51.93 -0.42 0.49 16 21 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 22 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.10 2.50 6.04 -51.93 -0.31 2.18 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.05 0.86 8.14 -51.94 -0.42 0.44 16 26 H 0.06 0.88 7.84 -51.93 -0.41 0.48 16 27 H 0.02 0.43 8.13 -51.93 -0.42 0.01 16 28 H 0.08 0.97 7.67 -51.93 -0.40 0.57 16 29 H 0.04 0.65 8.02 -51.93 -0.42 0.24 16 30 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.10 1.17 8.14 -51.92 -0.42 0.75 16 32 H 0.08 1.67 8.13 -51.92 -0.42 1.24 16 33 H 0.12 2.49 6.57 -51.93 -0.34 2.15 16 LS Contribution 263.57 15.07 3.97 3.97 Total: -1.00 -26.72 263.57 -9.57 -36.29 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.17 Total: 0.24 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -0.50 Total: -13.76 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: -0.44 Total: -34.62 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: -5.51 SS G_CDS: -2.41 Total: -7.92 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -26.72 -9.57 -36.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259522432.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.797 kcal (2) G-P(sol) polarization free energy of solvation -26.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds