Wall clock time and date at job start Mon Mar 30 2020 03:01:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86798 * 120.00321 * 2 1
4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1
5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1
6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1
7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1
9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1
10 10 H 1.09004 * 109.17283 * 60.00218 * 9 7 2
11 11 C 1.52628 * 109.17672 * 300.72482 * 9 7 2
12 12 C 1.52991 * 108.05683 * 181.14639 * 11 9 7
13 13 C 1.52505 * 107.97191 * 60.84794 * 12 11 9
14 14 N 1.47423 * 111.27648 * 299.34149 * 13 12 11
15 15 C 1.47390 * 106.85362 * 181.51078 * 14 13 12
16 16 C 1.52753 * 111.41826 * 164.82497 * 15 14 13
17 17 S 1.82059 * 107.66429 * 63.43649 * 16 15 14
18 18 C 1.81539 * 101.26819 * 307.23000 * 17 16 15
19 19 C 1.46278 * 112.69308 * 57.27475 * 14 13 12
20 20 H 1.09001 * 109.53128 * 68.16331 * 19 14 13
21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3
22 22 H 1.09007 * 109.78471 * 300.55469 * 11 9 7
23 23 H 1.08996 * 109.79079 * 61.39032 * 11 9 7
24 24 H 1.08999 * 109.68287 * 301.26948 * 12 11 9
25 25 H 1.08988 * 109.86323 * 180.52826 * 12 11 9
26 26 H 1.09000 * 109.11566 * 178.88422 * 13 12 11
27 27 H 1.09001 * 109.07023 * 59.77369 * 13 12 11
28 28 H 1.08997 * 109.09035 * 44.27570 * 15 14 13
29 29 H 1.09000 * 108.92326 * 285.25846 * 15 14 13
30 30 H 1.09003 * 109.82006 * 303.89316 * 16 15 14
31 31 H 1.09007 * 109.86903 * 183.00795 * 16 15 14
32 32 H 1.09003 * 109.44818 * 291.87663 * 18 17 16
33 33 H 1.08998 * 109.42061 * 171.95984 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 1.4001
5 1 3.5468 1.4401 -0.7001
6 1 1.4467 2.6526 -0.7001
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 1 0.6259 -2.5516 -0.8920
11 6 0.3630 -2.5653 1.2390
12 6 -0.3669 -3.9099 1.2283
13 6 0.6827 -5.0154 1.2735
14 7 1.5780 -4.9512 0.1040
15 6 2.5225 -6.0760 0.2268
16 6 3.2504 -6.3394 -1.0901
17 16 4.2451 -4.8643 -1.4762
18 6 2.9940 -3.5536 -1.3642
19 6 2.2535 -3.6597 -0.0194
20 1 2.9642 -3.5405 0.7984
21 1 -0.4850 0.8401 0.0004
22 1 0.9766 -2.4909 2.1369
23 1 -0.3616 -1.7513 1.2178
24 1 -0.9577 -3.9996 0.3167
25 1 -1.0185 -3.9845 2.0987
26 1 0.1814 -5.9832 1.2866
27 1 1.2745 -4.9076 2.1825
28 1 1.9741 -6.9721 0.5172
29 1 3.2550 -5.8399 0.9987
30 1 2.5251 -6.5145 -1.8847
31 1 3.9015 -7.2075 -0.9863
32 1 2.2804 -3.6622 -2.1810
33 1 3.4808 -2.5809 -1.4347
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259522432.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:01:31
Heat of formation + Delta-G solvation = -8.495850 kcal
Electronic energy + Delta-G solvation = -14636.969834 eV
Core-core repulsion = 12401.951996 eV
Total energy + Delta-G solvation = -2235.017838 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 227.104 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-38.73460 -34.38072 -32.61125 -31.48879 -29.37353 -26.72619 -24.82223 -22.94127
-21.52134 -20.56056 -18.73384 -16.53999 -16.07811 -15.18198 -14.63901 -14.48133
-13.84526 -13.61074 -13.14233 -12.92410 -12.65717 -12.42452 -12.02415 -11.52878
-11.24403 -11.10096 -10.98315 -10.74055 -10.46461 -10.25156 -9.89046 -9.85049
-9.51932 -8.93945 -8.69949 -8.35694 -7.86336 -7.27418 -6.04332 -4.11339
2.25895 2.99986 3.27739 3.34992 3.38013 4.22854 4.43035 5.14899
5.25301 5.33360 5.42075 5.56235 5.70206 5.75767 5.87824 5.92087
6.06527 6.08993 6.26682 6.30722 6.55190 6.59903 6.71556 6.82616
7.13807 7.26852 7.53298 7.61767 7.69142 7.94257 8.08777 8.37621
8.91374 9.53479 11.00921
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.029651 B = 0.010330 C = 0.008017
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 944.090034 B = 2709.832363 C = 3491.708022
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.886 5.886
2 C 0.065 3.935
3 Si 0.890 3.110
4 H -0.281 1.281
5 H -0.274 1.274
6 H -0.286 1.286
7 C -0.517 4.517
8 H 0.056 0.944
9 C 0.060 3.940
10 H 0.034 0.966
11 C -0.112 4.112
12 C -0.121 4.121
13 C 0.064 3.936
14 N -0.535 5.535
15 C 0.047 3.953
16 C -0.068 4.068
17 S -0.316 6.316
18 C -0.045 4.045
19 C 0.097 3.903
20 H 0.041 0.959
21 H 0.261 0.739
22 H 0.032 0.968
23 H 0.097 0.903
24 H 0.062 0.938
25 H 0.050 0.950
26 H 0.060 0.940
27 H 0.025 0.975
28 H 0.075 0.925
29 H 0.041 0.959
30 H 0.087 0.913
31 H 0.098 0.902
32 H 0.082 0.918
33 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.172 -9.703 0.759 9.972
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.525 5.525
2 C -0.137 4.137
3 Si 0.718 3.282
4 H -0.207 1.207
5 H -0.199 1.199
6 H -0.212 1.212
7 C -0.555 4.555
8 H 0.074 0.926
9 C 0.040 3.960
10 H 0.052 0.948
11 C -0.150 4.150
12 C -0.159 4.159
13 C -0.064 4.064
14 N -0.260 5.260
15 C -0.083 4.083
16 C -0.217 4.217
17 S -0.088 6.088
18 C -0.193 4.193
19 C -0.013 4.013
20 H 0.059 0.941
21 H 0.071 0.929
22 H 0.050 0.950
23 H 0.115 0.885
24 H 0.081 0.919
25 H 0.069 0.931
26 H 0.078 0.922
27 H 0.043 0.957
28 H 0.093 0.907
29 H 0.059 0.941
30 H 0.105 0.895
31 H 0.117 0.883
32 H 0.101 0.899
33 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges 2.879 -9.557 0.036 9.981
hybrid contribution -0.268 0.911 0.995 1.376
sum 2.611 -8.645 1.031 9.090
Atomic orbital electron populations
1.69871 1.05855 1.26476 1.50287 1.24918 0.94825 0.98993 0.94946
0.86623 0.79939 0.83533 0.78119 1.20728 1.19852 1.21213 1.21156
0.92814 0.90387 1.51169 0.92561 1.18737 0.92147 0.89811 0.95295
0.94767 1.21606 0.99870 0.95321 0.98207 1.21622 0.96959 0.96623
1.00716 1.22012 0.94724 0.99090 0.90579 1.62179 1.19308 1.03258
1.41302 1.22300 0.95140 0.95373 0.95467 1.23314 1.00533 0.97236
1.00612 1.86714 1.22775 1.05938 1.93412 1.23794 0.96975 0.97579
1.00973 1.21975 0.96341 0.88789 0.94186 0.94101 0.92941 0.94964
0.88452 0.91914 0.93093 0.92192 0.95686 0.90662 0.94079 0.89460
0.88344 0.89904 0.86386
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -24.46 11.27 55.43 0.62 -23.83 16
2 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16
3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16
4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
5 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16
6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
7 C -0.52 -13.50 7.63 -34.44 -0.26 -13.77 16
8 H 0.06 1.46 6.92 -52.49 -0.36 1.10 16
9 C 0.06 1.44 1.59 -91.78 -0.15 1.30 16
10 H 0.03 0.91 8.09 -51.93 -0.42 0.49 16
11 C -0.11 -2.56 5.02 -26.93 -0.14 -2.69 16
12 C -0.12 -2.29 6.12 -26.99 -0.17 -2.46 16
13 C 0.06 1.09 5.09 -3.79 -0.02 1.07 16
14 N -0.54 -9.72 4.72 -225.97 -1.07 -10.79 16
15 C 0.05 0.71 5.08 -3.68 -0.02 0.69 16
16 C -0.07 -0.98 6.74 37.03 0.25 -0.73 16
17 S -0.32 -5.51 22.42 -107.50 -2.41 -7.92 16
18 C -0.05 -0.90 5.52 37.62 0.21 -0.69 16
19 C 0.10 2.00 1.74 -67.40 -0.12 1.88 16
20 H 0.04 0.91 8.04 -51.93 -0.42 0.49 16
21 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16
22 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16
23 H 0.10 2.50 6.04 -51.93 -0.31 2.18 16
24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
25 H 0.05 0.86 8.14 -51.94 -0.42 0.44 16
26 H 0.06 0.88 7.84 -51.93 -0.41 0.48 16
27 H 0.02 0.43 8.13 -51.93 -0.42 0.01 16
28 H 0.08 0.97 7.67 -51.93 -0.40 0.57 16
29 H 0.04 0.65 8.02 -51.93 -0.42 0.24 16
30 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16
31 H 0.10 1.17 8.14 -51.92 -0.42 0.75 16
32 H 0.08 1.67 8.13 -51.92 -0.42 1.24 16
33 H 0.12 2.49 6.57 -51.93 -0.34 2.15 16
LS Contribution 263.57 15.07 3.97 3.97
Total: -1.00 -26.72 263.57 -9.57 -36.29
By element:
Atomic # 1 Polarization: 5.41 SS G_CDS: -5.17 Total: 0.24 kcal
Atomic # 6 Polarization: -13.26 SS G_CDS: -0.50 Total: -13.76 kcal
Atomic # 7 Polarization: -34.18 SS G_CDS: -0.44 Total: -34.62 kcal
Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal
Atomic # 16 Polarization: -5.51 SS G_CDS: -2.41 Total: -7.92 kcal
Total LS contribution 3.97 Total: 3.97 kcal
Total: -26.72 -9.57 -36.29 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259522432.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.797 kcal
(2) G-P(sol) polarization free energy of solvation -26.720 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.077 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.293 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.496 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds