Wall clock time and date at job start Mon Mar 30 2020 03:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.17283 * 60.00218 * 9 7 2 11 11 C 1.52628 * 109.17672 * 300.72482 * 9 7 2 12 12 C 1.52991 * 108.05683 * 181.14639 * 11 9 7 13 13 C 1.52505 * 107.97191 * 60.84794 * 12 11 9 14 14 N 1.47423 * 111.27648 * 299.34149 * 13 12 11 15 15 C 1.47390 * 106.85362 * 181.51078 * 14 13 12 16 16 C 1.52753 * 111.41826 * 164.82497 * 15 14 13 17 17 S 1.82059 * 107.66429 * 63.43649 * 16 15 14 18 18 C 1.81539 * 101.26819 * 307.23000 * 17 16 15 19 19 C 1.46278 * 112.69308 * 57.27475 * 14 13 12 20 20 H 1.09001 * 109.53128 * 68.16331 * 19 14 13 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.78471 * 300.55469 * 11 9 7 23 23 H 1.08996 * 109.79079 * 61.39032 * 11 9 7 24 24 H 1.08999 * 109.68287 * 301.26948 * 12 11 9 25 25 H 1.08988 * 109.86323 * 180.52826 * 12 11 9 26 26 H 1.09000 * 109.11566 * 178.88422 * 13 12 11 27 27 H 1.09001 * 109.07023 * 59.77369 * 13 12 11 28 28 H 1.08997 * 109.09035 * 44.27570 * 15 14 13 29 29 H 1.09000 * 108.92326 * 285.25846 * 15 14 13 30 30 H 1.09003 * 109.82006 * 303.89316 * 16 15 14 31 31 H 1.09007 * 109.86903 * 183.00795 * 16 15 14 32 32 H 1.09003 * 109.44818 * 291.87663 * 18 17 16 33 33 H 1.08998 * 109.42061 * 171.95984 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6259 -2.5516 -0.8920 11 6 0.3630 -2.5653 1.2390 12 6 -0.3669 -3.9099 1.2283 13 6 0.6827 -5.0154 1.2735 14 7 1.5780 -4.9512 0.1040 15 6 2.5225 -6.0760 0.2268 16 6 3.2504 -6.3394 -1.0901 17 16 4.2451 -4.8643 -1.4762 18 6 2.9940 -3.5536 -1.3642 19 6 2.2535 -3.6597 -0.0194 20 1 2.9642 -3.5405 0.7984 21 1 -0.4850 0.8401 0.0004 22 1 0.9766 -2.4909 2.1369 23 1 -0.3616 -1.7513 1.2178 24 1 -0.9577 -3.9996 0.3167 25 1 -1.0185 -3.9845 2.0987 26 1 0.1814 -5.9832 1.2866 27 1 1.2745 -4.9076 2.1825 28 1 1.9741 -6.9721 0.5172 29 1 3.2550 -5.8399 0.9987 30 1 2.5251 -6.5145 -1.8847 31 1 3.9015 -7.2075 -0.9863 32 1 2.2804 -3.6622 -2.1810 33 1 3.4808 -2.5809 -1.4347 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259522432.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:31 Heat of formation + Delta-G solvation = -24.293576 kcal Electronic energy + Delta-G solvation = -14637.654875 eV Core-core repulsion = 12401.951996 eV Total energy + Delta-G solvation = -2235.702879 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.28614 -36.06834 -34.25475 -33.24618 -30.82059 -28.44447 -26.65264 -24.37590 -23.15055 -22.07730 -20.42214 -18.51773 -17.52282 -16.73080 -16.29202 -16.13756 -15.28310 -15.09611 -14.72499 -14.52838 -14.21726 -13.97678 -13.62792 -13.01181 -12.88168 -12.78772 -12.59627 -12.57678 -12.16556 -11.89001 -11.69185 -11.52875 -11.13742 -10.79998 -10.37035 -10.34835 -9.31338 -8.67864 -8.09567 -6.22854 0.90625 1.39313 1.41253 1.50234 1.59563 2.40665 2.89847 3.17962 3.90117 3.93351 4.13822 4.22179 4.27834 4.33444 4.45125 4.60597 4.61406 4.74116 4.80015 4.86394 4.92666 4.94688 5.12370 5.17632 5.36888 5.47812 5.62412 5.91556 6.01313 6.16160 6.19265 6.41994 6.87309 7.44481 8.94287 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.029651 B = 0.010330 C = 0.008017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.090034 B = 2709.832363 C = 3491.708022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.948 3.052 4 H -0.277 1.277 5 H -0.270 1.270 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.062 3.938 10 H -0.001 1.001 11 C -0.108 4.108 12 C -0.114 4.114 13 C 0.064 3.936 14 N -0.545 5.545 15 C 0.046 3.954 16 C -0.059 4.059 17 S -0.323 6.323 18 C -0.043 4.043 19 C 0.112 3.888 20 H 0.023 0.977 21 H 0.260 0.740 22 H 0.022 0.978 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.027 0.973 28 H 0.112 0.888 29 H 0.037 0.963 30 H 0.093 0.907 31 H 0.134 0.866 32 H 0.072 0.928 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 -11.804 1.209 12.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.774 3.226 4 H -0.203 1.203 5 H -0.195 1.195 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.069 0.931 9 C 0.042 3.958 10 H 0.017 0.983 11 C -0.147 4.147 12 C -0.152 4.152 13 C -0.063 4.063 14 N -0.270 5.270 15 C -0.083 4.083 16 C -0.207 4.207 17 S -0.096 6.096 18 C -0.192 4.192 19 C 0.002 3.998 20 H 0.040 0.960 21 H 0.070 0.930 22 H 0.041 0.959 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.045 0.955 28 H 0.130 0.870 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.152 0.848 32 H 0.091 0.909 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.402 -11.671 0.488 12.166 hybrid contribution -0.430 1.499 0.849 1.776 sum 2.972 -10.171 1.337 10.681 Atomic orbital electron populations 1.70003 1.06983 1.27034 1.51103 1.25623 0.95589 1.01987 0.94875 0.85714 0.78827 0.79936 0.78155 1.20288 1.19491 1.20913 1.21459 0.92756 0.91837 1.50733 0.93141 1.18615 0.92388 0.90673 0.94131 0.98293 1.21434 0.99132 0.96980 0.97143 1.21533 0.97468 0.94883 1.01322 1.22070 0.94091 0.99911 0.90195 1.62185 1.20090 1.02652 1.42097 1.22428 0.94962 0.95223 0.95713 1.23498 1.00627 0.96153 1.00390 1.86703 1.22525 1.06766 1.93592 1.23502 0.97397 0.98103 1.00168 1.21604 0.94903 0.89420 0.93898 0.95951 0.93027 0.95884 0.91656 0.92902 0.90709 0.88412 0.95461 0.86960 0.94495 0.88880 0.84808 0.90893 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.95 11.27 21.45 0.24 -51.70 16 2 C 0.02 1.01 5.29 84.66 0.45 1.46 16 3 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.53 -28.65 7.63 25.60 0.20 -28.46 16 8 H 0.05 2.72 6.92 -2.91 -0.02 2.70 16 9 C 0.06 3.08 1.59 -11.54 -0.02 3.06 16 10 H 0.00 -0.06 8.09 -2.39 -0.02 -0.08 16 11 C -0.11 -5.08 5.02 30.47 0.15 -4.93 16 12 C -0.11 -4.20 6.12 30.43 0.19 -4.01 16 13 C 0.06 2.02 5.09 86.04 0.44 2.46 16 14 N -0.54 -18.69 4.72 -868.82 -4.10 -22.79 16 15 C 0.05 1.21 5.08 86.13 0.44 1.64 16 16 C -0.06 -1.47 6.74 71.90 0.48 -0.98 16 17 S -0.32 -10.82 22.42 -56.49 -1.27 -12.08 16 18 C -0.04 -1.74 5.52 72.28 0.40 -1.34 16 19 C 0.11 4.66 1.74 45.45 0.08 4.74 16 20 H 0.02 1.01 8.04 -2.39 -0.02 0.99 16 21 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 22 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 23 H 0.06 3.47 6.04 -2.39 -0.01 3.46 16 24 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.10 2.40 7.84 -2.39 -0.02 2.38 16 27 H 0.03 0.86 8.13 -2.39 -0.02 0.84 16 28 H 0.11 2.23 7.67 -2.39 -0.02 2.22 16 29 H 0.04 1.04 8.02 -2.39 -0.02 1.02 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.13 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.07 3.01 8.13 -2.39 -0.02 2.99 16 33 H 0.10 4.20 6.57 -2.39 -0.02 4.18 16 Total: -1.00 -59.20 263.57 0.77 -58.42 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.07 Total: 8.95 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 2.80 Total: -26.36 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -3.86 Total: -74.50 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -10.82 SS G_CDS: -1.27 Total: -12.08 kcal Total: -59.20 0.77 -58.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259522432.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.129 kcal (2) G-P(sol) polarization free energy of solvation -59.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds