Wall clock time and date at job start Mon Mar 30 2020 03:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99878 * 2 1 4 4 H 1.48497 * 109.47083 * 239.99817 * 3 2 1 5 5 H 1.48499 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47406 * 119.99877 * 3 2 1 7 7 C 1.37875 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99952 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99848 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.12935 * 299.25074 * 9 7 2 11 11 C 1.52619 * 109.17664 * 58.51102 * 9 7 2 12 12 C 1.53422 * 107.82451 * 61.74478 * 11 9 7 13 13 C 1.52507 * 107.95992 * 60.94541 * 12 11 9 14 14 N 1.47415 * 111.28264 * 299.27563 * 13 12 11 15 15 C 1.47434 * 106.69940 * 181.32940 * 14 13 12 16 16 C 1.52752 * 111.25303 * 164.67511 * 15 14 13 17 17 S 1.82056 * 107.67149 * 63.50086 * 16 15 14 18 18 C 1.81545 * 101.26178 * 307.23196 * 17 16 15 19 19 C 1.46286 * 112.68727 * 57.25564 * 14 13 12 20 20 H 1.09001 * 109.52451 * 68.15924 * 19 14 13 21 21 H 0.97005 * 120.00095 * 0.02562 * 1 2 3 22 22 H 1.08992 * 109.79319 * 302.16169 * 11 9 7 23 23 H 1.09006 * 109.78937 * 181.32297 * 11 9 7 24 24 H 1.09000 * 109.76606 * 301.33375 * 12 11 9 25 25 H 1.09000 * 109.80919 * 180.58408 * 12 11 9 26 26 H 1.09006 * 109.11456 * 178.81159 * 13 12 11 27 27 H 1.08998 * 109.06911 * 59.71217 * 13 12 11 28 28 H 1.09002 * 109.12182 * 285.13400 * 15 14 13 29 29 H 1.08999 * 109.12220 * 44.21797 * 15 14 13 30 30 H 1.08999 * 109.81995 * 183.04276 * 16 15 14 31 31 H 1.09005 * 109.82206 * 303.89739 * 16 15 14 32 32 H 1.09002 * 109.44840 * 291.89174 * 18 17 16 33 33 H 1.08997 * 109.44896 * 171.97939 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6370 -2.5562 0.9005 11 6 0.3478 -2.5576 -1.2271 12 6 1.2435 -2.4998 -2.4715 13 6 2.1700 -3.7108 -2.4406 14 7 3.0253 -3.6996 -1.2400 15 6 3.8953 -4.8866 -1.3285 16 6 5.0681 -4.7875 -0.3548 17 16 4.3851 -4.7667 1.3326 18 6 3.1766 -3.4176 1.2095 19 6 2.2537 -3.6596 0.0022 20 1 1.7205 -4.6016 0.1303 21 1 -0.4850 0.8401 -0.0004 22 1 -0.3349 -1.7080 -1.2241 23 1 -0.2199 -3.4881 -1.2239 24 1 1.8339 -1.5837 -2.4585 25 1 0.6285 -2.5292 -3.3709 26 1 2.8016 -3.6998 -3.3290 27 1 1.5683 -4.6197 -2.4418 28 1 3.3106 -5.7761 -1.0939 29 1 4.2808 -4.9718 -2.3445 30 1 5.7241 -5.6493 -0.4774 31 1 5.6257 -3.8694 -0.5401 32 1 3.7014 -2.4709 1.0812 33 1 2.5798 -3.3806 2.1208 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259522437.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:36 Heat of formation + Delta-G solvation = -1.899403 kcal Electronic energy + Delta-G solvation = -14856.916817 eV Core-core repulsion = 12622.185023 eV Total energy + Delta-G solvation = -2234.731794 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.74012 -34.34737 -32.27197 -31.48848 -29.26365 -26.48276 -24.87471 -22.87174 -21.79732 -20.48814 -18.68534 -16.07633 -15.98962 -15.19590 -14.57639 -14.34992 -13.79770 -13.59519 -13.18581 -12.92525 -12.54937 -12.31986 -11.76148 -11.39008 -11.34185 -11.13430 -10.87202 -10.77668 -10.49496 -10.15839 -9.81791 -9.59334 -9.35794 -8.84622 -8.75736 -8.27389 -7.71265 -7.22731 -5.95597 -3.99037 2.30154 3.02557 3.33998 3.38617 3.42168 4.35273 4.46644 5.20962 5.35572 5.39059 5.48762 5.60732 5.79946 5.86051 5.90558 5.99168 6.14697 6.20593 6.26516 6.42211 6.52564 6.70538 6.78889 6.89884 7.29231 7.39887 7.51398 7.72338 7.82900 7.93835 8.14891 8.47337 9.01849 9.63171 11.09459 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.011057 C = 0.009477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.540089 B = 2531.808517 C = 2953.899136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.488 4.488 8 H 0.062 0.938 9 C 0.052 3.948 10 H 0.031 0.969 11 C -0.114 4.114 12 C -0.105 4.105 13 C 0.066 3.934 14 N -0.515 5.515 15 C 0.045 3.955 16 C -0.064 4.064 17 S -0.325 6.325 18 C -0.047 4.047 19 C 0.101 3.899 20 H 0.025 0.975 21 H 0.259 0.741 22 H 0.101 0.899 23 H 0.012 0.988 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.017 0.983 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.086 -7.297 -2.946 9.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.526 4.526 8 H 0.080 0.920 9 C 0.032 3.968 10 H 0.049 0.951 11 C -0.153 4.153 12 C -0.143 4.143 13 C -0.061 4.061 14 N -0.240 5.240 15 C -0.085 4.085 16 C -0.213 4.213 17 S -0.098 6.098 18 C -0.194 4.194 19 C -0.009 4.009 20 H 0.043 0.957 21 H 0.069 0.931 22 H 0.119 0.881 23 H 0.030 0.970 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.125 0.875 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.514 -7.395 -2.008 9.440 hybrid contribution -0.294 0.911 -0.977 1.368 sum 5.220 -6.484 -2.986 8.843 Atomic orbital electron populations 1.69832 1.05830 1.26309 1.51426 1.24930 0.94747 0.98846 0.95619 0.86733 0.79596 0.83536 0.78592 1.20387 1.21594 1.20424 1.21075 0.92952 0.89636 1.48981 0.91950 1.18835 0.91535 0.91573 0.94902 0.95124 1.21627 0.98541 0.99996 0.95102 1.21470 0.97168 0.98189 0.97482 1.22005 0.94649 0.97929 0.91536 1.62127 1.22180 1.37189 1.02501 1.22351 0.94457 0.92911 0.98770 1.23293 0.99604 1.05272 0.93143 1.86610 1.52416 1.51484 1.19260 1.23858 0.96949 0.97323 1.01295 1.21874 0.93395 0.98651 0.86949 0.95674 0.93117 0.88094 0.96972 0.89958 0.94139 0.92336 0.96492 0.94436 0.90670 0.88512 0.89286 0.87496 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.48 11.18 55.43 0.62 -23.86 16 2 C 0.06 1.55 5.29 -17.82 -0.09 1.45 16 3 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.49 -12.39 6.13 -34.44 -0.21 -12.60 16 8 H 0.06 1.61 6.17 -52.49 -0.32 1.29 16 9 C 0.05 1.22 2.03 -91.78 -0.19 1.03 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.61 5.35 -26.71 -0.14 -2.75 16 12 C -0.11 -2.15 5.93 -26.76 -0.16 -2.31 16 13 C 0.07 1.20 5.08 -3.79 -0.02 1.18 16 14 N -0.51 -9.71 4.51 -225.93 -1.02 -10.73 16 15 C 0.04 0.70 5.08 -3.66 -0.02 0.68 16 16 C -0.06 -0.96 6.73 37.03 0.25 -0.71 16 17 S -0.32 -5.65 22.42 -107.50 -2.41 -8.06 16 18 C -0.05 -0.91 5.34 37.62 0.20 -0.71 16 19 C 0.10 2.07 1.98 -67.40 -0.13 1.93 16 20 H 0.03 0.53 8.04 -51.93 -0.42 0.11 16 21 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 22 H 0.10 2.58 5.88 -51.93 -0.31 2.28 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.08 1.89 7.10 -51.93 -0.37 1.52 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.94 7.84 -51.93 -0.41 0.53 16 27 H 0.02 0.30 8.13 -51.93 -0.42 -0.13 16 28 H 0.04 0.60 8.02 -51.93 -0.42 0.18 16 29 H 0.07 1.02 7.67 -51.93 -0.40 0.62 16 30 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.11 2.28 6.02 -51.92 -0.31 1.96 16 33 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16 LS Contribution 259.95 15.07 3.92 3.92 Total: -1.00 -26.33 259.95 -9.47 -35.80 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.04 Total: -0.10 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -0.51 Total: -12.81 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: -0.40 Total: -34.59 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -5.65 SS G_CDS: -2.41 Total: -8.06 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.33 -9.47 -35.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259522437.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.902 kcal (2) G-P(sol) polarization free energy of solvation -26.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds