Wall clock time and date at job start Mon Mar 30 2020 03:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99878 * 2 1 4 4 H 1.48497 * 109.47083 * 239.99817 * 3 2 1 5 5 H 1.48499 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47406 * 119.99877 * 3 2 1 7 7 C 1.37875 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99952 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99848 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.12935 * 299.25074 * 9 7 2 11 11 C 1.52619 * 109.17664 * 58.51102 * 9 7 2 12 12 C 1.53422 * 107.82451 * 61.74478 * 11 9 7 13 13 C 1.52507 * 107.95992 * 60.94541 * 12 11 9 14 14 N 1.47415 * 111.28264 * 299.27563 * 13 12 11 15 15 C 1.47434 * 106.69940 * 181.32940 * 14 13 12 16 16 C 1.52752 * 111.25303 * 164.67511 * 15 14 13 17 17 S 1.82056 * 107.67149 * 63.50086 * 16 15 14 18 18 C 1.81545 * 101.26178 * 307.23196 * 17 16 15 19 19 C 1.46286 * 112.68727 * 57.25564 * 14 13 12 20 20 H 1.09001 * 109.52451 * 68.15924 * 19 14 13 21 21 H 0.97005 * 120.00095 * 0.02562 * 1 2 3 22 22 H 1.08992 * 109.79319 * 302.16169 * 11 9 7 23 23 H 1.09006 * 109.78937 * 181.32297 * 11 9 7 24 24 H 1.09000 * 109.76606 * 301.33375 * 12 11 9 25 25 H 1.09000 * 109.80919 * 180.58408 * 12 11 9 26 26 H 1.09006 * 109.11456 * 178.81159 * 13 12 11 27 27 H 1.08998 * 109.06911 * 59.71217 * 13 12 11 28 28 H 1.09002 * 109.12182 * 285.13400 * 15 14 13 29 29 H 1.08999 * 109.12220 * 44.21797 * 15 14 13 30 30 H 1.08999 * 109.81995 * 183.04276 * 16 15 14 31 31 H 1.09005 * 109.82206 * 303.89739 * 16 15 14 32 32 H 1.09002 * 109.44840 * 291.89174 * 18 17 16 33 33 H 1.08997 * 109.44896 * 171.97939 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6370 -2.5562 0.9005 11 6 0.3478 -2.5576 -1.2271 12 6 1.2435 -2.4998 -2.4715 13 6 2.1700 -3.7108 -2.4406 14 7 3.0253 -3.6996 -1.2400 15 6 3.8953 -4.8866 -1.3285 16 6 5.0681 -4.7875 -0.3548 17 16 4.3851 -4.7667 1.3326 18 6 3.1766 -3.4176 1.2095 19 6 2.2537 -3.6596 0.0022 20 1 1.7205 -4.6016 0.1303 21 1 -0.4850 0.8401 -0.0004 22 1 -0.3349 -1.7080 -1.2241 23 1 -0.2199 -3.4881 -1.2239 24 1 1.8339 -1.5837 -2.4585 25 1 0.6285 -2.5292 -3.3709 26 1 2.8016 -3.6998 -3.3290 27 1 1.5683 -4.6197 -2.4418 28 1 3.3106 -5.7761 -1.0939 29 1 4.2808 -4.9718 -2.3445 30 1 5.7241 -5.6493 -0.4774 31 1 5.6257 -3.8694 -0.5401 32 1 3.7014 -2.4709 1.0812 33 1 2.5798 -3.3806 2.1208 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259522437.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:36 Heat of formation + Delta-G solvation = -17.027935 kcal Electronic energy + Delta-G solvation = -14857.572840 eV Core-core repulsion = 12622.185023 eV Total energy + Delta-G solvation = -2235.387817 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.31493 -36.00718 -33.93803 -33.23106 -30.73404 -28.16613 -26.77733 -24.32272 -23.36959 -22.00690 -20.46303 -17.87285 -17.50177 -16.68713 -16.42333 -15.95574 -15.23408 -15.10978 -14.81495 -14.50026 -14.04573 -13.92204 -13.40968 -13.05796 -12.91168 -12.73022 -12.59462 -12.49205 -12.14576 -11.90537 -11.55138 -11.26802 -11.04979 -10.70546 -10.39251 -10.24441 -9.16810 -8.62984 -7.98262 -6.06167 0.95092 1.44477 1.45703 1.51871 1.62080 2.49116 2.95475 3.30885 3.94641 3.96806 4.19190 4.28475 4.31349 4.42403 4.48067 4.60709 4.70272 4.77423 4.82366 4.84813 4.95635 5.04585 5.11036 5.22014 5.51319 5.60395 5.72231 5.87585 6.15330 6.24422 6.35114 6.53131 6.99488 7.57843 9.05408 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.011057 C = 0.009477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.540089 B = 2531.808517 C = 2953.899136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.940 3.060 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.482 4.482 8 H 0.057 0.943 9 C 0.049 3.951 10 H -0.005 1.005 11 C -0.113 4.113 12 C -0.100 4.100 13 C 0.069 3.931 14 N -0.532 5.532 15 C 0.045 3.955 16 C -0.058 4.058 17 S -0.324 6.324 18 C -0.045 4.045 19 C 0.114 3.886 20 H 0.022 0.978 21 H 0.256 0.744 22 H 0.068 0.932 23 H 0.020 0.980 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.028 0.972 28 H 0.040 0.960 29 H 0.107 0.893 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.874 -8.590 -4.243 11.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.184 4.184 3 Si 0.767 3.233 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.520 4.520 8 H 0.075 0.925 9 C 0.029 3.971 10 H 0.013 0.987 11 C -0.151 4.151 12 C -0.137 4.137 13 C -0.058 4.058 14 N -0.257 5.257 15 C -0.084 4.084 16 C -0.206 4.206 17 S -0.097 6.097 18 C -0.194 4.194 19 C 0.003 3.997 20 H 0.040 0.960 21 H 0.065 0.935 22 H 0.087 0.913 23 H 0.039 0.961 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.125 0.875 30 H 0.150 0.850 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.318 -8.697 -3.309 11.838 hybrid contribution -0.829 1.257 -0.573 1.611 sum 6.489 -7.440 -3.882 10.608 Atomic orbital electron populations 1.69976 1.06922 1.26537 1.52751 1.25549 0.95362 1.01560 0.95925 0.85890 0.78444 0.80409 0.78534 1.19996 1.21763 1.20225 1.21209 0.92653 0.90469 1.47659 0.92504 1.18765 0.92040 0.92525 0.93761 0.98682 1.21505 0.98428 0.98958 0.96232 1.21359 0.97136 0.98320 0.96907 1.22009 0.94806 0.96779 0.92255 1.62106 1.22332 1.39504 1.01771 1.22447 0.93891 0.91331 1.00709 1.23459 0.99682 1.06808 0.90647 1.86597 1.51435 1.49656 1.22043 1.23589 0.97400 0.97673 1.00690 1.21579 0.92952 0.96730 0.88421 0.96031 0.93508 0.91325 0.96099 0.92793 0.92113 0.89388 0.95387 0.94192 0.87533 0.85007 0.89440 0.89582 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.95 11.18 21.45 0.24 -51.71 16 2 C 0.01 0.71 5.29 84.65 0.45 1.16 16 3 Si 0.94 43.36 29.54 68.60 2.03 45.38 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.48 -24.90 6.13 25.60 0.16 -24.74 16 8 H 0.06 2.97 6.17 -2.91 -0.02 2.95 16 9 C 0.05 2.37 2.03 -11.55 -0.02 2.35 16 10 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 11 C -0.11 -5.20 5.35 30.61 0.16 -5.04 16 12 C -0.10 -3.94 5.93 30.57 0.18 -3.76 16 13 C 0.07 2.27 5.08 86.04 0.44 2.71 16 14 N -0.53 -18.81 4.51 -868.71 -3.92 -22.73 16 15 C 0.05 1.23 5.08 86.12 0.44 1.67 16 16 C -0.06 -1.51 6.73 71.90 0.48 -1.02 16 17 S -0.32 -10.67 22.42 -56.49 -1.27 -11.93 16 18 C -0.05 -1.77 5.34 72.28 0.39 -1.39 16 19 C 0.11 4.58 1.98 45.45 0.09 4.67 16 20 H 0.02 0.89 8.04 -2.39 -0.02 0.87 16 21 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 22 H 0.07 3.62 5.88 -2.39 -0.01 3.61 16 23 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.05 2.44 7.10 -2.39 -0.02 2.42 16 25 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.09 2.43 7.84 -2.38 -0.02 2.41 16 27 H 0.03 0.88 8.13 -2.39 -0.02 0.86 16 28 H 0.04 1.10 8.02 -2.39 -0.02 1.08 16 29 H 0.11 2.30 7.67 -2.39 -0.02 2.28 16 30 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 32 H 0.09 3.70 6.02 -2.39 -0.01 3.69 16 33 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 Total: -1.00 -57.10 259.95 0.92 -56.18 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.08 Total: 8.22 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 2.76 Total: -23.40 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -3.68 Total: -74.45 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -10.67 SS G_CDS: -1.27 Total: -11.93 kcal Total: -57.10 0.92 -56.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259522437.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.155 kcal (2) G-P(sol) polarization free energy of solvation -57.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds