Wall clock time and date at job start Mon Mar 30 2020 03:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39123 * 119.52283 * 2 1 4 4 C 1.37751 * 120.84171 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.28760 * 180.02562 * 4 3 2 6 6 C 1.39357 * 119.42992 * 359.73237 * 4 3 2 7 7 C 1.46776 * 122.14590 * 179.70441 * 6 4 3 8 8 C 1.40420 * 120.51559 * 0.54009 * 7 6 4 9 9 H 1.08006 * 120.00061 * 42.50956 * 8 7 6 10 10 C 1.40314 * 120.00330 * 222.22832 * 8 7 6 11 11 N 1.30601 * 119.99593 * 0.27651 * 10 8 7 12 12 Si 1.86798 * 120.00255 * 180.27747 * 10 8 7 13 13 H 1.48502 * 109.46908 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47212 * 119.99775 * 12 10 8 15 15 H 1.48498 * 109.46929 * 239.99882 * 12 10 8 16 16 N 1.33638 * 118.97007 * 180.26450 * 7 6 4 17 17 C 1.31645 * 122.40313 * 0.25654 * 16 7 6 18 18 C 1.38005 * 122.67928 * 0.02562 * 17 16 7 19 19 C 1.40722 * 119.50469 * 359.97438 * 18 17 16 20 20 C 1.36416 * 119.51808 * 179.97438 * 2 1 3 21 21 H 1.09007 * 109.47024 * 270.02130 * 1 2 3 22 22 H 1.09002 * 109.46856 * 30.01829 * 1 2 3 23 23 H 1.08994 * 109.47366 * 150.02460 * 1 2 3 24 24 H 1.07999 * 119.57998 * 359.97438 * 3 2 1 25 25 H 1.08997 * 109.47175 * 98.25879 * 5 4 3 26 26 H 1.09003 * 109.47200 * 218.25634 * 5 4 3 27 27 H 1.09003 * 109.47011 * 338.25666 * 5 4 3 28 28 H 0.97005 * 119.99485 * 180.02562 * 11 10 8 29 29 H 1.07999 * 118.65842 * 180.02562 * 17 16 7 30 30 H 1.08005 * 120.24880 * 179.97438 * 18 17 16 31 31 H 1.07999 * 120.22437 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.2106 0.0000 4 6 3.5697 1.2423 -0.0005 5 6 4.2996 2.5607 0.0001 6 6 4.2822 0.0447 0.0046 7 6 5.7495 0.0088 -0.0021 8 6 6.4918 1.2008 -0.0026 9 1 6.1949 2.0222 0.6327 10 6 7.6228 1.3226 -0.8241 11 7 7.9820 0.3293 -1.5922 12 14 8.6148 2.9054 -0.8190 13 1 8.0035 3.8697 0.1306 14 1 10.0095 2.6142 -0.4003 15 1 8.6197 3.4908 -2.1837 16 7 6.3681 -1.1758 -0.0020 17 6 5.7093 -2.3156 -0.0011 18 6 4.3308 -2.3795 -0.0007 19 6 3.5818 -1.1882 -0.0007 20 6 2.1791 -1.1871 0.0005 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5141 23 1 -0.3634 -0.8901 -0.5134 24 1 1.6380 2.1373 -0.0004 25 1 4.6051 2.8065 1.0171 26 1 5.1813 2.4882 -0.6367 27 1 3.6403 3.3412 -0.3799 28 1 8.7641 0.4134 -2.1598 29 1 6.2707 -3.2382 -0.0007 30 1 3.8305 -3.3367 -0.0004 31 1 1.6349 -2.1200 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259538987.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:46 Heat of formation + Delta-G solvation = 35.430205 kcal Electronic energy + Delta-G solvation = -15105.957421 eV Core-core repulsion = 12737.400409 eV Total energy + Delta-G solvation = -2368.557013 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.27404 -36.27549 -34.29514 -32.75829 -31.12029 -29.09552 -27.45779 -25.99441 -25.21366 -22.16398 -21.16290 -19.70170 -17.79465 -16.14604 -15.67211 -15.08628 -14.79942 -13.52447 -13.50722 -13.18412 -12.82397 -12.78450 -12.55752 -11.98278 -11.88807 -11.72371 -11.46042 -11.41410 -11.24797 -10.81799 -10.48995 -10.36629 -9.96286 -9.71909 -9.25219 -8.43581 -7.70864 -7.62751 -6.92087 -6.70979 -4.61021 1.72347 2.25920 2.87313 2.98667 3.02768 3.23553 3.78668 4.22598 4.65492 5.47596 5.52555 5.58594 5.81876 5.88829 5.95804 6.06699 6.13469 6.20293 6.29184 6.35738 6.50724 6.53267 6.56688 6.82866 7.00631 7.02599 7.15783 7.25532 7.31879 7.54079 7.68294 7.77580 8.02176 8.10308 8.43700 8.66333 9.93056 10.09885 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.031198 B = 0.009862 C = 0.007725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.275637 B = 2838.547281 C = 3623.751075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.066 4.066 3 C -0.199 4.199 4 C -0.012 4.012 5 C -0.130 4.130 6 C -0.158 4.158 7 C 0.307 3.693 8 C -0.430 4.430 9 H 0.108 0.892 10 C 0.075 3.925 11 N -0.743 5.743 12 Si 0.912 3.088 13 H -0.255 1.255 14 H -0.269 1.269 15 H -0.270 1.270 16 N -0.538 5.538 17 C 0.146 3.854 18 C -0.329 4.329 19 C 0.028 3.972 20 C -0.172 4.172 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.104 0.896 25 H 0.064 0.936 26 H 0.112 0.888 27 H 0.040 0.960 28 H 0.283 0.717 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.607 3.016 1.049 6.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.066 4.066 3 C -0.218 4.218 4 C -0.013 4.013 5 C -0.186 4.186 6 C -0.161 4.161 7 C 0.175 3.825 8 C -0.461 4.461 9 H 0.126 0.874 10 C -0.150 4.150 11 N -0.365 5.365 12 Si 0.735 3.265 13 H -0.178 1.178 14 H -0.194 1.194 15 H -0.195 1.195 16 N -0.252 5.252 17 C -0.010 4.010 18 C -0.353 4.353 19 C 0.024 3.976 20 C -0.191 4.191 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.122 0.878 25 H 0.083 0.917 26 H 0.130 0.870 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.133 0.867 30 H 0.117 0.883 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.533 2.879 0.872 5.440 hybrid contribution -0.567 0.300 -0.136 0.656 sum -5.100 3.179 0.736 6.054 Atomic orbital electron populations 1.20743 0.92667 1.01710 1.01346 1.19363 0.94780 0.93422 0.99062 1.20495 0.93457 0.96263 1.11590 1.19714 0.92821 0.94644 0.94144 1.21578 1.01889 0.92526 1.02575 1.20106 0.95715 0.92213 1.08085 1.19754 0.86089 0.91856 0.84821 1.19837 1.07192 0.98797 1.20258 0.87407 1.26084 0.96129 0.98246 0.94553 1.69757 1.20883 1.30340 1.15476 0.86189 0.79872 0.81037 0.79389 1.17817 1.19421 1.19545 1.68412 1.38418 0.96857 1.21510 1.22155 0.91016 0.96244 0.91553 1.21207 0.95084 0.95920 1.23049 1.17864 0.92649 0.93078 0.93963 1.20472 0.93131 0.96549 1.08900 0.92036 0.92296 0.92339 0.87762 0.91720 0.86978 0.94068 0.90586 0.86674 0.88295 0.87555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.98 36.01 0.36 -1.20 16 2 C -0.07 -1.26 5.85 -104.95 -0.61 -1.87 16 3 C -0.20 -3.96 9.29 -39.43 -0.37 -4.32 16 4 C -0.01 -0.27 5.90 -104.38 -0.62 -0.88 16 5 C -0.13 -2.51 8.14 36.01 0.29 -2.22 16 6 C -0.16 -3.96 5.90 -104.67 -0.62 -4.57 16 7 C 0.31 8.22 6.28 -82.81 -0.52 7.70 16 8 C -0.43 -10.69 6.03 -37.98 -0.23 -10.92 16 9 H 0.11 2.45 5.04 -52.48 -0.26 2.19 16 10 C 0.07 1.79 5.46 -17.29 -0.09 1.70 16 11 N -0.74 -19.14 12.39 55.57 0.69 -18.45 16 12 Si 0.91 17.43 29.56 -169.99 -5.03 12.40 16 13 H -0.25 -4.65 7.11 56.52 0.40 -4.25 16 14 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 15 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 16 N -0.54 -14.76 9.10 -9.86 -0.09 -14.85 16 17 C 0.15 3.61 11.07 -17.72 -0.20 3.41 16 18 C -0.33 -7.74 9.91 -38.73 -0.38 -8.13 16 19 C 0.03 0.69 5.74 -106.84 -0.61 0.07 16 20 C -0.17 -3.60 9.42 -39.48 -0.37 -3.97 16 21 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 22 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 23 H 0.06 0.77 8.07 -51.93 -0.42 0.35 16 24 H 0.10 1.79 8.04 -52.49 -0.42 1.37 16 25 H 0.06 1.18 7.33 -51.93 -0.38 0.80 16 26 H 0.11 2.34 5.08 -51.93 -0.26 2.08 16 27 H 0.04 0.68 8.03 -51.93 -0.42 0.26 16 28 H 0.28 6.56 8.29 -40.82 -0.34 6.22 16 29 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 30 H 0.10 2.06 8.06 -52.48 -0.42 1.64 16 31 H 0.11 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 261.63 15.07 3.94 3.94 Total: -1.00 -28.71 261.63 -7.87 -36.58 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -3.41 Total: 5.59 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -3.97 Total: -25.21 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.60 Total: -33.30 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.71 -7.87 -36.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259538987.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.007 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds