Wall clock time and date at job start Mon Mar 30 2020 03:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39123 * 119.52283 * 2 1 4 4 C 1.37751 * 120.84171 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.28760 * 180.02562 * 4 3 2 6 6 C 1.39357 * 119.42992 * 359.73237 * 4 3 2 7 7 C 1.46776 * 122.14590 * 179.70441 * 6 4 3 8 8 C 1.40420 * 120.51559 * 0.54009 * 7 6 4 9 9 H 1.08006 * 120.00061 * 42.50956 * 8 7 6 10 10 C 1.40314 * 120.00330 * 222.22832 * 8 7 6 11 11 N 1.30601 * 119.99593 * 0.27651 * 10 8 7 12 12 Si 1.86798 * 120.00255 * 180.27747 * 10 8 7 13 13 H 1.48502 * 109.46908 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47212 * 119.99775 * 12 10 8 15 15 H 1.48498 * 109.46929 * 239.99882 * 12 10 8 16 16 N 1.33638 * 118.97007 * 180.26450 * 7 6 4 17 17 C 1.31645 * 122.40313 * 0.25654 * 16 7 6 18 18 C 1.38005 * 122.67928 * 0.02562 * 17 16 7 19 19 C 1.40722 * 119.50469 * 359.97438 * 18 17 16 20 20 C 1.36416 * 119.51808 * 179.97438 * 2 1 3 21 21 H 1.09007 * 109.47024 * 270.02130 * 1 2 3 22 22 H 1.09002 * 109.46856 * 30.01829 * 1 2 3 23 23 H 1.08994 * 109.47366 * 150.02460 * 1 2 3 24 24 H 1.07999 * 119.57998 * 359.97438 * 3 2 1 25 25 H 1.08997 * 109.47175 * 98.25879 * 5 4 3 26 26 H 1.09003 * 109.47200 * 218.25634 * 5 4 3 27 27 H 1.09003 * 109.47011 * 338.25666 * 5 4 3 28 28 H 0.97005 * 119.99485 * 180.02562 * 11 10 8 29 29 H 1.07999 * 118.65842 * 180.02562 * 17 16 7 30 30 H 1.08005 * 120.24880 * 179.97438 * 18 17 16 31 31 H 1.07999 * 120.22437 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.2106 0.0000 4 6 3.5697 1.2423 -0.0005 5 6 4.2996 2.5607 0.0001 6 6 4.2822 0.0447 0.0046 7 6 5.7495 0.0088 -0.0021 8 6 6.4918 1.2008 -0.0026 9 1 6.1949 2.0222 0.6327 10 6 7.6228 1.3226 -0.8241 11 7 7.9820 0.3293 -1.5922 12 14 8.6148 2.9054 -0.8190 13 1 8.0035 3.8697 0.1306 14 1 10.0095 2.6142 -0.4003 15 1 8.6197 3.4908 -2.1837 16 7 6.3681 -1.1758 -0.0020 17 6 5.7093 -2.3156 -0.0011 18 6 4.3308 -2.3795 -0.0007 19 6 3.5818 -1.1882 -0.0007 20 6 2.1791 -1.1871 0.0005 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5141 23 1 -0.3634 -0.8901 -0.5134 24 1 1.6380 2.1373 -0.0004 25 1 4.6051 2.8065 1.0171 26 1 5.1813 2.4882 -0.6367 27 1 3.6403 3.3412 -0.3799 28 1 8.7641 0.4134 -2.1598 29 1 6.2707 -3.2382 -0.0007 30 1 3.8305 -3.3367 -0.0004 31 1 1.6349 -2.1200 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259538987.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:46 Heat of formation + Delta-G solvation = 19.900455 kcal Electronic energy + Delta-G solvation = -15106.630842 eV Core-core repulsion = 12737.400409 eV Total energy + Delta-G solvation = -2369.230433 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.98164 -37.98301 -36.04889 -34.39133 -32.78646 -30.87298 -29.07000 -27.51614 -26.89866 -23.93595 -22.88938 -21.32965 -19.57191 -17.84857 -17.41052 -16.81081 -16.44446 -15.14818 -15.08456 -14.79475 -14.40864 -14.23034 -14.09808 -13.57722 -13.46539 -13.34077 -13.01589 -12.86856 -12.81713 -12.36297 -12.03276 -11.92312 -11.59798 -11.40992 -10.99030 -10.18526 -9.51834 -9.40189 -8.69379 -8.46869 -6.47303 -0.00159 0.54952 1.27148 1.41738 1.54990 1.59364 2.19055 2.50312 2.91347 3.74681 4.02547 4.09639 4.18532 4.42531 4.46225 4.59001 4.61984 4.77862 4.83992 4.89794 4.94608 5.00066 5.09592 5.18126 5.29150 5.37575 5.47063 5.62673 5.66076 5.90657 5.96699 6.00497 6.24237 6.42785 6.63554 6.81717 8.08164 8.34272 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.031198 B = 0.009862 C = 0.007725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.275637 B = 2838.547281 C = 3623.751075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.062 4.062 3 C -0.191 4.191 4 C -0.034 4.034 5 C -0.125 4.125 6 C -0.190 4.190 7 C 0.276 3.724 8 C -0.448 4.448 9 H 0.122 0.878 10 C 0.031 3.969 11 N -0.793 5.793 12 Si 0.988 3.012 13 H -0.237 1.237 14 H -0.270 1.270 15 H -0.263 1.263 16 N -0.578 5.578 17 C 0.118 3.882 18 C -0.330 4.330 19 C -0.004 4.004 20 C -0.181 4.181 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.140 0.860 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.288 0.712 29 H 0.132 0.868 30 H 0.122 0.878 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.863 4.884 1.284 9.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.063 4.063 3 C -0.209 4.209 4 C -0.035 4.035 5 C -0.181 4.181 6 C -0.194 4.194 7 C 0.143 3.857 8 C -0.479 4.479 9 H 0.140 0.860 10 C -0.189 4.189 11 N -0.416 5.416 12 Si 0.807 3.193 13 H -0.160 1.160 14 H -0.195 1.195 15 H -0.188 1.188 16 N -0.293 5.293 17 C -0.036 4.036 18 C -0.353 4.353 19 C -0.008 4.008 20 C -0.200 4.200 21 H 0.099 0.901 22 H 0.097 0.903 23 H 0.090 0.910 24 H 0.157 0.843 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.819 4.722 1.117 8.370 hybrid contribution -0.076 -0.333 -0.193 0.392 sum -6.895 4.390 0.924 8.226 Atomic orbital electron populations 1.20815 0.88712 1.03488 1.03069 1.19949 0.97637 0.92399 0.96290 1.20988 0.92744 0.98148 1.09034 1.20103 0.94116 0.94710 0.94552 1.21490 1.01656 0.92162 1.02758 1.20412 0.95462 0.94027 1.09490 1.20263 0.87555 0.92300 0.85549 1.20192 1.08034 0.98801 1.20903 0.86013 1.27113 0.96682 1.01707 0.93404 1.69866 1.21873 1.33049 1.16861 0.85066 0.77712 0.76593 0.79918 1.15983 1.19510 1.18798 1.68344 1.39842 0.97893 1.23268 1.22498 0.92066 0.96405 0.92633 1.21502 0.94829 0.97100 1.21919 1.18305 0.94486 0.93010 0.95026 1.20777 0.91870 0.98550 1.08792 0.90126 0.90267 0.90957 0.84268 0.90996 0.88852 0.90905 0.90150 0.85043 0.85975 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.49 9.98 71.24 0.71 -1.78 16 2 C -0.06 -2.17 5.85 -20.08 -0.12 -2.29 16 3 C -0.19 -6.97 9.29 22.37 0.21 -6.76 16 4 C -0.03 -1.45 5.90 -19.71 -0.12 -1.57 16 5 C -0.13 -4.64 8.14 71.24 0.58 -4.06 16 6 C -0.19 -9.73 5.90 -19.90 -0.12 -9.85 16 7 C 0.28 15.37 6.28 41.63 0.26 15.63 16 8 C -0.45 -22.92 6.03 23.31 0.14 -22.77 16 9 H 0.12 5.60 5.04 -2.91 -0.01 5.59 16 10 C 0.03 1.52 5.46 85.38 0.47 1.98 16 11 N -0.79 -42.59 12.39 21.89 0.27 -42.32 16 12 Si 0.99 35.84 29.56 68.60 2.03 37.86 16 13 H -0.24 -7.83 7.11 99.48 0.71 -7.12 16 14 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 15 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 16 N -0.58 -33.38 9.10 -185.10 -1.69 -35.07 16 17 C 0.12 6.08 11.07 84.67 0.94 7.02 16 18 C -0.33 -15.86 9.91 22.82 0.23 -15.64 16 19 C 0.00 -0.22 5.74 -21.30 -0.12 -0.34 16 20 C -0.18 -7.28 9.42 22.34 0.21 -7.07 16 21 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 22 H 0.08 1.61 8.08 -2.39 -0.02 1.59 16 23 H 0.07 1.56 8.07 -2.39 -0.02 1.54 16 24 H 0.14 4.07 8.04 -2.91 -0.02 4.05 16 25 H 0.07 2.52 7.33 -2.39 -0.02 2.50 16 26 H 0.09 3.87 5.08 -2.39 -0.01 3.85 16 27 H 0.07 2.17 8.03 -2.39 -0.02 2.16 16 28 H 0.29 13.93 8.29 -92.70 -0.77 13.16 16 29 H 0.13 6.00 8.06 -2.91 -0.02 5.97 16 30 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 31 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -65.08 261.63 5.02 -60.06 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 1.14 Total: 26.95 kcal Atomic # 6 Polarization: -50.75 SS G_CDS: 3.27 Total: -47.49 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -1.41 Total: -77.39 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.86 kcal Total: -65.08 5.02 -60.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259538987.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.964 kcal (2) G-P(sol) polarization free energy of solvation -65.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds