Wall clock time and date at job start Mon Mar 30 2020 02:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99646 * 2 1 4 4 H 1.48504 * 109.47160 * 240.00542 * 3 2 1 5 5 H 1.48501 * 109.47295 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47298 * 120.00199 * 3 2 1 7 7 C 1.37873 * 120.00765 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00283 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99777 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.91607 * 301.12850 * 9 7 2 11 11 C 1.55180 * 110.10380 * 62.36934 * 9 7 2 12 12 S 1.83539 * 102.21501 * 161.27820 * 11 9 7 13 13 C 1.82692 * 97.33535 * 337.14545 * 12 11 9 14 14 C 1.53729 * 105.09185 * 357.86932 * 13 12 11 15 15 C 1.52468 * 109.90366 * 116.72096 * 13 12 11 16 16 C 1.53172 * 109.19612 * 177.80227 * 15 13 12 17 17 C 1.53045 * 109.22973 * 303.31691 * 16 15 13 18 18 N 1.46840 * 109.60382 * 59.71577 * 17 16 15 19 19 C 1.46946 * 111.15375 * 297.79582 * 18 17 16 20 20 H 0.96998 * 120.00407 * 359.97438 * 1 2 3 21 21 H 1.09005 * 110.85752 * 279.45796 * 11 9 7 22 22 H 1.08996 * 110.85557 * 42.88942 * 11 9 7 23 23 H 1.09004 * 109.62358 * 147.49264 * 14 13 12 24 24 H 1.08997 * 109.62827 * 267.70347 * 14 13 12 25 25 H 1.09000 * 109.50950 * 297.71946 * 15 13 12 26 26 H 1.08999 * 109.51329 * 57.87782 * 15 13 12 27 27 H 1.08996 * 109.47559 * 183.40338 * 16 15 13 28 28 H 1.09000 * 109.52331 * 63.25769 * 16 15 13 29 29 H 1.09002 * 109.44508 * 299.68335 * 17 16 15 30 30 H 1.09003 * 109.44221 * 179.75204 * 17 16 15 31 31 H 1.00907 * 110.99889 * 61.86346 * 18 17 16 32 32 H 1.09000 * 109.45437 * 180.68036 * 19 18 17 33 33 H 1.09005 * 109.44777 * 300.61829 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1938 -0.0010 9 6 1.2513 -2.4991 -0.0005 10 1 0.6072 -2.5560 0.8769 11 6 0.3988 -2.6229 -1.2913 12 16 0.0643 -4.4261 -1.3643 13 6 1.4806 -4.9675 -0.3451 14 6 2.2425 -3.6774 -0.0012 15 6 0.9773 -5.6438 0.9253 16 6 2.1756 -6.1396 1.7405 17 6 3.0206 -7.0775 0.8751 18 7 3.4930 -6.3581 -0.3146 19 6 2.3669 -5.9126 -1.1469 20 1 -0.4850 0.8400 0.0004 21 1 -0.5297 -2.0595 -1.1987 22 1 0.9646 -2.2943 -2.1630 23 1 2.6980 -3.7729 0.9845 24 1 3.0194 -3.5016 -0.7452 25 1 0.4056 -4.9285 1.5165 26 1 0.3420 -6.4890 0.6606 27 1 1.8199 -6.6769 2.6195 28 1 2.7808 -5.2885 2.0530 29 1 2.4157 -7.9303 0.5671 30 1 3.8769 -7.4290 1.4506 31 1 4.0820 -5.5804 -0.0568 32 1 2.7484 -5.3938 -2.0263 33 1 1.7831 -6.7779 -1.4610 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259629881.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:44 Heat of formation + Delta-G solvation = -23.181829 kcal Electronic energy + Delta-G solvation = -14434.519848 eV Core-core repulsion = 12198.865179 eV Total energy + Delta-G solvation = -2235.654670 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.05412 -35.01341 -32.31819 -31.31557 -29.95712 -25.56640 -25.23271 -23.56072 -22.34385 -20.58605 -18.32879 -16.55665 -16.21149 -15.42687 -14.76727 -14.52059 -14.30540 -13.75206 -13.10505 -12.93341 -12.58529 -12.21287 -11.86112 -11.52041 -11.34798 -11.03901 -11.01688 -11.00246 -10.68658 -10.47366 -10.12402 -9.98732 -9.47804 -9.46778 -8.83445 -8.53372 -8.21595 -6.91188 -6.17737 -4.24465 2.66016 3.21985 3.28588 3.30131 3.41892 4.30675 4.52919 4.97976 5.09213 5.15168 5.24010 5.27256 5.48146 5.65482 5.70566 5.99726 6.01042 6.06639 6.19210 6.25352 6.29779 6.47798 6.48962 6.66789 6.69319 6.80567 7.11839 7.33683 7.51132 7.58130 7.79421 8.15355 8.77485 9.41329 10.90057 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.037635 B = 0.008482 C = 0.007728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.812985 B = 3300.482484 C = 3622.244196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.051 3.949 10 H 0.040 0.960 11 C -0.022 4.022 12 S -0.365 6.365 13 C -0.039 4.039 14 C -0.113 4.113 15 C -0.092 4.092 16 C -0.157 4.157 17 C 0.056 3.944 18 N -0.682 5.682 19 C 0.084 3.916 20 H 0.265 0.735 21 H 0.105 0.895 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.342 0.658 32 H 0.080 0.920 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.952 -9.536 1.367 10.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.031 3.969 10 H 0.058 0.942 11 C -0.170 4.170 12 S -0.135 6.135 13 C -0.151 4.151 14 C -0.152 4.152 15 C -0.132 4.132 16 C -0.198 4.198 17 C -0.074 4.074 18 N -0.311 5.311 19 C -0.047 4.047 20 H 0.074 0.926 21 H 0.123 0.877 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.160 0.840 32 H 0.099 0.901 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.993 -10.615 0.392 11.036 hybrid contribution 0.762 2.431 1.073 2.765 sum 3.756 -8.184 1.465 9.123 Atomic orbital electron populations 1.69902 1.05977 1.27159 1.49344 1.25011 0.94916 0.99379 0.94504 0.86587 0.79589 0.82719 0.78755 1.20097 1.21153 1.20146 1.20974 0.92874 0.89745 1.52056 0.92242 1.19650 0.92111 0.92246 0.92901 0.94223 1.24621 1.04506 0.85383 1.02460 1.87013 1.41215 1.15543 1.69769 1.23543 0.95512 0.99101 0.96898 1.22494 0.99402 0.92221 1.01052 1.21519 0.96955 0.99927 0.94764 1.22382 0.98187 1.00239 0.98999 1.22010 0.98201 0.96550 0.90617 1.60866 1.19509 1.30623 1.20127 1.22025 0.90489 0.96966 0.95270 0.92560 0.87697 0.91311 0.91735 0.92004 0.90990 0.92026 0.91601 0.91381 0.91239 0.91057 0.84017 0.90143 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.48 11.94 55.43 0.66 -23.82 16 2 C 0.07 1.73 5.33 -17.82 -0.09 1.63 16 3 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -13.48 8.53 -34.44 -0.29 -13.77 16 8 H 0.06 1.52 7.76 -52.49 -0.41 1.11 16 9 C 0.05 1.22 2.47 -90.11 -0.22 1.00 16 10 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 11 C -0.02 -0.52 6.16 38.31 0.24 -0.28 16 12 S -0.37 -7.48 22.06 -107.50 -2.37 -9.85 16 13 C -0.04 -0.69 0.73 -90.83 -0.07 -0.75 16 14 C -0.11 -2.22 3.92 -25.84 -0.10 -2.32 16 15 C -0.09 -1.48 4.82 -26.91 -0.13 -1.61 16 16 C -0.16 -2.06 5.87 -26.62 -0.16 -2.22 16 17 C 0.06 0.68 6.53 -3.83 -0.03 0.66 16 18 N -0.68 -9.36 6.85 -114.11 -0.78 -10.14 16 19 C 0.08 1.30 5.26 -4.12 -0.02 1.28 16 20 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 21 H 0.10 2.69 7.19 -51.93 -0.37 2.32 16 22 H 0.07 1.64 8.10 -51.93 -0.42 1.22 16 23 H 0.06 1.21 6.12 -51.93 -0.32 0.89 16 24 H 0.06 1.22 7.73 -51.93 -0.40 0.81 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.94 6.49 -51.93 -0.34 0.60 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.34 4.62 8.15 -39.29 -0.32 4.30 16 32 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 266.20 15.07 4.01 4.01 Total: -1.00 -26.46 266.20 -9.47 -35.93 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.09 Total: 4.75 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -0.88 Total: -16.38 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: -0.12 Total: -33.96 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: -7.48 SS G_CDS: -2.37 Total: -9.85 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -26.46 -9.47 -35.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259629881.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.743 kcal (2) G-P(sol) polarization free energy of solvation -26.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds