Wall clock time and date at job start Mon Mar 30 2020 02:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00172 * 2 1 4 4 H 1.48501 * 109.47255 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47243 * 300.00191 * 3 2 1 6 6 H 1.48500 * 109.46824 * 60.00206 * 3 2 1 7 7 C 1.37886 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99710 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99692 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.45160 * 59.78222 * 9 7 2 11 11 C 1.55202 * 109.60588 * 299.55131 * 9 7 2 12 12 S 1.84055 * 100.94298 * 198.83377 * 11 9 7 13 13 C 1.83039 * 95.75495 * 35.11019 * 12 11 9 14 14 C 1.53079 * 109.59963 * 180.02562 * 9 7 2 15 15 C 1.52516 * 109.66420 * 221.32176 * 13 12 11 16 16 C 1.53231 * 109.19261 * 182.57373 * 15 13 12 17 17 C 1.53035 * 109.20549 * 56.75177 * 16 15 13 18 18 N 1.46852 * 109.62898 * 300.34669 * 17 16 15 19 19 C 1.46956 * 111.14955 * 62.17669 * 18 17 16 20 20 H 0.96997 * 120.00257 * 359.97438 * 1 2 3 21 21 H 1.09002 * 111.12188 * 316.75469 * 11 9 7 22 22 H 1.09000 * 111.12382 * 80.87310 * 11 9 7 23 23 H 1.09000 * 108.91921 * 29.18020 * 14 9 7 24 24 H 1.08998 * 108.91630 * 270.69624 * 14 9 7 25 25 H 1.08998 * 109.52081 * 302.49228 * 15 13 12 26 26 H 1.09002 * 109.51625 * 62.66418 * 15 13 12 27 27 H 1.09002 * 109.51424 * 176.66691 * 16 15 13 28 28 H 1.09001 * 109.51958 * 296.77429 * 16 15 13 29 29 H 1.08998 * 109.44976 * 180.29710 * 17 16 15 30 30 H 1.08997 * 109.44742 * 60.39326 * 17 16 15 31 31 H 1.00900 * 110.99768 * 298.11209 * 18 17 16 32 32 H 1.08996 * 109.45069 * 59.30295 * 19 18 17 33 33 H 1.08999 * 109.44868 * 179.25125 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6212 -2.5546 -0.8884 11 6 0.3666 -2.5898 1.2716 12 16 0.0463 -4.4008 1.3462 13 6 1.6868 -4.9037 0.7088 14 6 2.2430 -3.6649 -0.0005 15 6 1.5236 -6.0583 -0.2743 16 6 2.9068 -6.5127 -0.7517 17 6 3.7573 -6.8960 0.4614 18 7 3.8946 -5.7376 1.3535 19 6 2.5875 -5.3084 1.8700 20 1 -0.4850 0.8400 0.0004 21 1 0.9105 -2.2504 2.1532 22 1 -0.5608 -2.0311 1.1460 23 1 3.1577 -3.3507 0.5022 24 1 2.4816 -3.9259 -1.0316 25 1 1.0179 -6.8881 0.2193 26 1 0.9336 -5.7279 -1.1293 27 1 2.7998 -7.3759 -1.4087 28 1 3.3901 -5.7001 -1.2941 29 1 4.7443 -7.2150 0.1265 30 1 3.2756 -7.7128 0.9989 31 1 4.3671 -4.9770 0.8883 32 1 2.1261 -6.1299 2.4179 33 1 2.7227 -4.4575 2.5377 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259629891.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:46 Heat of formation + Delta-G solvation = -36.869959 kcal Electronic energy + Delta-G solvation = -14439.202728 eV Core-core repulsion = 12202.954496 eV Total energy + Delta-G solvation = -2236.248232 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.34913 -36.76320 -34.03865 -32.64021 -31.43014 -27.55161 -26.99480 -24.72149 -23.56825 -22.30065 -19.70929 -18.57781 -17.63919 -16.85237 -16.34878 -16.07533 -15.60726 -15.36441 -14.64848 -14.36755 -14.17167 -13.56391 -13.35772 -13.09053 -12.94368 -12.80130 -12.73382 -12.32161 -12.25967 -11.89236 -11.66765 -11.51137 -11.24080 -11.10408 -10.70098 -10.47648 -9.44130 -8.57554 -8.19104 -6.33371 1.10109 1.38578 1.42271 1.53029 1.59835 2.38948 3.10815 3.42900 3.67511 3.75268 3.97226 4.13543 4.19329 4.41013 4.50016 4.53315 4.63453 4.72996 4.76519 4.91474 4.97159 5.00673 5.06516 5.07222 5.19728 5.34431 5.45914 5.62472 5.78410 6.02307 6.16587 6.43285 6.75570 7.35947 8.87332 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.037190 B = 0.008605 C = 0.007739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.711772 B = 3252.955380 C = 3617.393558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.529 4.529 8 H 0.063 0.937 9 C 0.046 3.954 10 H 0.002 0.998 11 C -0.009 4.009 12 S -0.377 6.377 13 C -0.023 4.023 14 C -0.099 4.099 15 C -0.091 4.091 16 C -0.147 4.147 17 C 0.056 3.944 18 N -0.681 5.681 19 C 0.089 3.911 20 H 0.263 0.737 21 H 0.060 0.940 22 H 0.079 0.921 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.344 0.656 32 H 0.079 0.921 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.757 -10.954 0.086 12.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.784 3.216 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.569 4.569 8 H 0.081 0.919 9 C 0.025 3.975 10 H 0.020 0.980 11 C -0.157 4.157 12 S -0.148 6.148 13 C -0.134 4.134 14 C -0.138 4.138 15 C -0.130 4.130 16 C -0.188 4.188 17 C -0.073 4.073 18 N -0.310 5.310 19 C -0.042 4.042 20 H 0.073 0.927 21 H 0.078 0.922 22 H 0.098 0.902 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.162 0.838 32 H 0.097 0.903 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.757 -11.874 1.040 13.237 hybrid contribution 0.204 2.415 -1.164 2.688 sum 5.961 -9.460 -0.123 11.182 Atomic orbital electron populations 1.70049 1.07388 1.27600 1.50568 1.25811 0.95658 1.02746 0.94305 0.85479 0.79246 0.79291 0.77536 1.18659 1.20766 1.20702 1.21489 0.93165 0.90867 1.51346 0.91894 1.19452 0.92464 0.93550 0.91999 0.97956 1.24302 1.02847 0.87178 1.01409 1.87258 1.27104 1.12987 1.87423 1.23693 0.91868 0.98306 0.99545 1.22009 0.99489 0.92239 1.00046 1.21478 0.98592 0.95608 0.97327 1.22325 0.94621 1.02239 0.99619 1.22131 1.00598 0.93279 0.91333 1.60896 1.18398 1.10679 1.41013 1.22015 0.87880 1.00440 0.93890 0.92743 0.92176 0.90213 0.91664 0.91621 0.91315 0.92497 0.89062 0.91900 0.88586 0.90544 0.83774 0.90296 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.00 11.78 21.45 0.25 -51.75 16 2 C 0.01 0.79 5.31 84.66 0.45 1.24 16 3 Si 0.96 42.23 29.54 68.60 2.03 44.25 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.53 -27.87 8.44 25.60 0.22 -27.65 16 8 H 0.06 3.21 7.54 -2.91 -0.02 3.18 16 9 C 0.05 2.25 2.46 -10.76 -0.03 2.22 16 10 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 11 C -0.01 -0.45 6.18 72.74 0.45 0.00 16 12 S -0.38 -15.57 22.00 -56.49 -1.24 -16.82 16 13 C -0.02 -0.77 0.80 -11.08 -0.01 -0.78 16 14 C -0.10 -3.85 4.52 30.69 0.14 -3.71 16 15 C -0.09 -2.61 4.65 30.51 0.14 -2.46 16 16 C -0.15 -3.20 5.87 30.68 0.18 -3.02 16 17 C 0.06 1.13 6.53 86.32 0.56 1.69 16 18 N -0.68 -17.10 6.85 -514.84 -3.53 -20.63 16 19 C 0.09 2.69 5.17 86.10 0.44 3.13 16 20 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 21 H 0.06 2.94 8.10 -2.39 -0.02 2.92 16 22 H 0.08 4.31 7.09 -2.39 -0.02 4.29 16 23 H 0.06 2.47 6.25 -2.39 -0.01 2.46 16 24 H 0.07 2.43 6.52 -2.39 -0.02 2.41 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 1.46 6.88 -2.39 -0.02 1.44 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.34 8.65 7.58 -89.69 -0.68 7.97 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -57.28 264.81 0.47 -56.82 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.41 Total: 17.47 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 2.55 Total: -29.35 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -3.28 Total: -72.37 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: -15.57 SS G_CDS: -1.24 Total: -16.82 kcal Total: -57.28 0.47 -56.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259629891.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.949 kcal (2) G-P(sol) polarization free energy of solvation -57.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds