Wall clock time and date at job start Mon Mar 30 2020 03:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48662 * 111.00112 * 2 1 4 4 C 1.54665 * 104.64339 * 201.52653 * 3 2 1 5 5 C 1.53173 * 104.61598 * 23.69511 * 4 3 2 6 6 C 1.52594 * 111.91574 * 122.02972 * 5 4 3 7 7 C 1.53259 * 112.16848 * 123.34522 * 6 5 4 8 8 H 1.09005 * 109.60008 * 89.92457 * 7 6 5 9 9 C 1.50700 * 109.59838 * 210.22979 * 7 6 5 10 10 H 1.07999 * 119.99988 * 0.39219 * 9 7 6 11 11 C 1.37885 * 120.00047 * 180.39399 * 9 7 6 12 12 N 1.31518 * 119.99792 * 359.72305 * 11 9 7 13 13 Si 1.86795 * 120.00009 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47021 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47081 * 119.99727 * 13 11 9 16 16 H 1.48501 * 109.47213 * 240.00099 * 13 11 9 17 17 C 1.55257 * 108.84515 * 330.07685 * 7 6 5 18 18 S 1.82625 * 110.54864 * 239.71365 * 5 4 3 19 19 C 1.48835 * 111.00189 * 244.34248 * 2 1 3 20 20 H 1.08996 * 109.47179 * 60.12800 * 1 2 3 21 21 H 1.09006 * 109.46709 * 180.12733 * 1 2 3 22 22 H 1.08997 * 109.47034 * 300.12231 * 1 2 3 23 23 H 1.08995 * 110.40341 * 82.73086 * 3 2 1 24 24 H 1.09008 * 110.39887 * 320.31240 * 3 2 1 25 25 H 1.09000 * 110.40810 * 264.91254 * 4 3 2 26 26 H 1.09003 * 110.40789 * 142.47956 * 4 3 2 27 27 H 1.09001 * 108.95492 * 2.63132 * 6 5 4 28 28 H 1.08998 * 108.84657 * 243.98368 * 6 5 4 29 29 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 30 30 H 1.09007 * 111.11794 * 158.98557 * 17 7 6 31 31 H 1.08991 * 111.11717 * 283.13646 * 17 7 6 32 32 H 1.09002 * 110.45861 * 39.38403 * 19 2 1 33 33 H 1.08998 * 110.46324 * 276.80260 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0018 1.3879 0.0000 4 6 3.4415 1.2540 -0.5491 5 6 3.4246 -0.0414 -1.3663 6 6 3.8276 0.1962 -2.8187 7 6 5.0231 -0.6674 -3.2358 8 1 4.6667 -1.6175 -3.6338 9 6 5.8240 0.0533 -4.2895 10 1 5.5171 1.0328 -4.6252 11 6 6.9486 -0.5380 -4.8251 12 7 7.3254 -1.7286 -4.4124 13 14 7.9418 0.3555 -6.1307 14 1 7.3157 1.6720 -6.4141 15 1 9.3291 0.5613 -5.6427 16 1 7.9696 -0.4567 -7.3736 17 6 5.9139 -0.9256 -1.9907 18 16 4.6373 -1.2343 -0.7019 19 6 2.0024 -0.6016 -1.2525 20 1 -0.3633 0.5118 -0.8911 21 1 -0.3633 -1.0277 0.0023 22 1 -0.3633 0.5157 0.8889 23 1 2.0173 1.7889 1.0134 24 1 1.4039 2.0244 -0.6525 25 1 4.1554 1.1768 0.2710 26 1 3.6852 2.1031 -1.1877 27 1 4.0881 1.2468 -2.9466 28 1 2.9798 -0.0385 -3.4623 29 1 8.1164 -2.1447 -4.7895 30 1 6.5442 -1.8034 -2.1339 31 1 6.5140 -0.0486 -1.7485 32 1 1.4021 -0.2940 -2.1087 33 1 2.0261 -1.6885 -1.1732 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259699998.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:47 Heat of formation + Delta-G solvation = -3.818418 kcal Electronic energy + Delta-G solvation = -14184.034219 eV Core-core repulsion = 11949.219210 eV Total energy + Delta-G solvation = -2234.815009 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.91987 -35.32196 -32.65231 -30.74407 -28.80470 -26.09922 -25.46967 -24.09288 -21.13620 -20.53775 -19.21799 -16.55534 -16.07006 -15.18785 -14.93595 -14.38509 -14.08283 -13.82945 -13.02934 -12.86870 -12.52259 -12.29848 -11.87114 -11.44632 -11.34842 -11.23097 -11.11083 -10.87917 -10.82370 -10.55878 -10.12042 -9.82312 -9.49428 -9.38441 -8.72228 -8.44910 -8.36845 -6.80468 -6.14074 -4.20395 2.77245 3.22011 3.31267 3.34356 3.46632 4.15922 4.33849 4.81810 4.92756 5.18229 5.29957 5.38471 5.44912 5.55677 5.75451 5.82333 5.84416 5.95417 6.08803 6.19198 6.27972 6.45775 6.47873 6.67683 6.73448 6.89762 6.94492 7.11636 7.41893 7.64989 7.84026 8.20687 8.81983 9.45011 10.93479 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.049826 B = 0.007312 C = 0.006936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.822784 B = 3828.573135 C = 4035.954815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.515 5.515 3 C 0.034 3.966 4 C -0.108 4.108 5 C -0.008 4.008 6 C -0.109 4.109 7 C 0.047 3.953 8 H 0.041 0.959 9 C -0.515 4.515 10 H 0.060 0.940 11 C 0.064 3.936 12 N -0.887 5.887 13 Si 0.895 3.105 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.023 4.023 18 S -0.344 6.344 19 C 0.057 3.943 20 H 0.026 0.974 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.263 0.737 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.193 4.587 5.698 11.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.238 5.238 3 C -0.095 4.095 4 C -0.148 4.148 5 C -0.118 4.118 6 C -0.148 4.148 7 C 0.027 3.973 8 H 0.059 0.941 9 C -0.555 4.555 10 H 0.078 0.922 11 C -0.139 4.139 12 N -0.524 5.524 13 Si 0.723 3.277 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.171 4.171 18 S -0.115 6.115 19 C -0.072 4.072 20 H 0.044 0.956 21 H 0.086 0.914 22 H 0.084 0.916 23 H 0.097 0.903 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.126 0.874 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.919 3.374 7.147 11.917 hybrid contribution 0.350 1.576 -2.401 2.894 sum -8.569 4.950 4.746 10.975 Atomic orbital electron populations 1.22491 0.88521 1.02019 1.00402 1.65430 1.07556 1.15215 1.35640 1.23204 0.95591 0.89970 1.00719 1.22667 0.96404 0.96076 0.99677 1.23104 0.95228 0.95398 0.98105 1.22221 0.99849 1.02026 0.90720 1.19569 0.89506 0.95804 0.92420 0.94111 1.21163 1.10052 1.03317 1.20953 0.92228 1.25016 0.97381 0.94832 0.96677 1.69926 1.25255 1.14633 1.42627 0.86485 0.79981 0.79828 0.81446 1.19725 1.20881 1.20901 1.24727 0.96613 1.04264 0.91449 1.87361 1.21111 1.57097 1.45914 1.23173 0.92773 1.00823 0.90436 0.95588 0.91365 0.91574 0.90343 0.94084 0.89762 0.90727 0.91737 0.92409 0.92716 0.87355 0.91425 0.93192 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.52 60.06 0.57 0.74 16 2 N -0.51 -7.66 5.66 -238.42 -1.35 -9.01 16 3 C 0.03 0.46 6.53 -1.97 -0.01 0.45 16 4 C -0.11 -1.73 6.37 -25.77 -0.16 -1.89 16 5 C -0.01 -0.14 1.10 -90.60 -0.10 -0.24 16 6 C -0.11 -2.21 5.31 -26.81 -0.14 -2.35 16 7 C 0.05 1.15 2.47 -90.44 -0.22 0.92 16 8 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 9 C -0.52 -13.52 8.43 -34.44 -0.29 -13.81 16 10 H 0.06 1.54 7.54 -52.49 -0.40 1.14 16 11 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 12 N -0.89 -24.57 11.82 55.43 0.65 -23.91 16 13 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 17 C -0.02 -0.54 6.18 38.35 0.24 -0.30 16 18 S -0.34 -7.24 21.61 -107.50 -2.32 -9.56 16 19 C 0.06 0.93 5.60 -2.61 -0.01 0.91 16 20 H 0.03 0.29 7.98 -51.93 -0.41 -0.13 16 21 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 24 H 0.04 0.52 7.96 -51.92 -0.41 0.10 16 25 H 0.08 1.40 7.64 -51.93 -0.40 1.01 16 26 H 0.07 1.13 7.19 -51.93 -0.37 0.76 16 27 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 28 H 0.06 1.11 7.31 -51.93 -0.38 0.73 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 30 H 0.11 2.79 7.12 -51.92 -0.37 2.42 16 31 H 0.07 1.61 8.09 -51.93 -0.42 1.19 16 32 H 0.05 0.77 7.28 -51.93 -0.38 0.39 16 33 H 0.09 1.59 7.79 -51.93 -0.40 1.18 16 LS Contribution 270.17 15.07 4.07 4.07 Total: -1.00 -27.30 270.17 -9.32 -36.62 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.11 Total: 0.21 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -0.23 Total: -13.96 kcal Atomic # 7 Polarization: -32.23 SS G_CDS: -0.69 Total: -32.92 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: -7.24 SS G_CDS: -2.32 Total: -9.56 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.30 -9.32 -36.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259699998.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.800 kcal (2) G-P(sol) polarization free energy of solvation -27.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds