Wall clock time and date at job start Mon Mar 30 2020 03:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48662 * 111.00112 * 2 1 4 4 C 1.54665 * 104.64339 * 201.52653 * 3 2 1 5 5 C 1.53173 * 104.61598 * 23.69511 * 4 3 2 6 6 C 1.52594 * 111.91574 * 122.02972 * 5 4 3 7 7 C 1.53259 * 112.16848 * 123.34522 * 6 5 4 8 8 H 1.09005 * 109.60008 * 89.92457 * 7 6 5 9 9 C 1.50700 * 109.59838 * 210.22979 * 7 6 5 10 10 H 1.07999 * 119.99988 * 0.39219 * 9 7 6 11 11 C 1.37885 * 120.00047 * 180.39399 * 9 7 6 12 12 N 1.31518 * 119.99792 * 359.72305 * 11 9 7 13 13 Si 1.86795 * 120.00009 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47021 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47081 * 119.99727 * 13 11 9 16 16 H 1.48501 * 109.47213 * 240.00099 * 13 11 9 17 17 C 1.55257 * 108.84515 * 330.07685 * 7 6 5 18 18 S 1.82625 * 110.54864 * 239.71365 * 5 4 3 19 19 C 1.48835 * 111.00189 * 244.34248 * 2 1 3 20 20 H 1.08996 * 109.47179 * 60.12800 * 1 2 3 21 21 H 1.09006 * 109.46709 * 180.12733 * 1 2 3 22 22 H 1.08997 * 109.47034 * 300.12231 * 1 2 3 23 23 H 1.08995 * 110.40341 * 82.73086 * 3 2 1 24 24 H 1.09008 * 110.39887 * 320.31240 * 3 2 1 25 25 H 1.09000 * 110.40810 * 264.91254 * 4 3 2 26 26 H 1.09003 * 110.40789 * 142.47956 * 4 3 2 27 27 H 1.09001 * 108.95492 * 2.63132 * 6 5 4 28 28 H 1.08998 * 108.84657 * 243.98368 * 6 5 4 29 29 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 30 30 H 1.09007 * 111.11794 * 158.98557 * 17 7 6 31 31 H 1.08991 * 111.11717 * 283.13646 * 17 7 6 32 32 H 1.09002 * 110.45861 * 39.38403 * 19 2 1 33 33 H 1.08998 * 110.46324 * 276.80260 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0018 1.3879 0.0000 4 6 3.4415 1.2540 -0.5491 5 6 3.4246 -0.0414 -1.3663 6 6 3.8276 0.1962 -2.8187 7 6 5.0231 -0.6674 -3.2358 8 1 4.6667 -1.6175 -3.6338 9 6 5.8240 0.0533 -4.2895 10 1 5.5171 1.0328 -4.6252 11 6 6.9486 -0.5380 -4.8251 12 7 7.3254 -1.7286 -4.4124 13 14 7.9418 0.3555 -6.1307 14 1 7.3157 1.6720 -6.4141 15 1 9.3291 0.5613 -5.6427 16 1 7.9696 -0.4567 -7.3736 17 6 5.9139 -0.9256 -1.9907 18 16 4.6373 -1.2343 -0.7019 19 6 2.0024 -0.6016 -1.2525 20 1 -0.3633 0.5118 -0.8911 21 1 -0.3633 -1.0277 0.0023 22 1 -0.3633 0.5157 0.8889 23 1 2.0173 1.7889 1.0134 24 1 1.4039 2.0244 -0.6525 25 1 4.1554 1.1768 0.2710 26 1 3.6852 2.1031 -1.1877 27 1 4.0881 1.2468 -2.9466 28 1 2.9798 -0.0385 -3.4623 29 1 8.1164 -2.1447 -4.7895 30 1 6.5442 -1.8034 -2.1339 31 1 6.5140 -0.0486 -1.7485 32 1 1.4021 -0.2940 -2.1087 33 1 2.0261 -1.6885 -1.1732 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259699998.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:46 Heat of formation + Delta-G solvation = -20.199839 kcal Electronic energy + Delta-G solvation = -14184.744571 eV Core-core repulsion = 11949.219210 eV Total energy + Delta-G solvation = -2235.525361 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.19688 -37.04088 -34.35886 -32.30319 -30.16229 -27.47799 -27.39961 -25.53907 -22.35149 -22.11029 -20.83663 -18.48878 -17.62610 -16.53167 -16.39541 -15.96304 -15.74411 -15.15441 -14.66348 -14.18925 -13.88969 -13.79014 -13.46510 -13.03804 -12.90407 -12.69256 -12.59124 -12.43379 -12.30645 -12.19675 -11.76528 -11.47470 -11.24924 -11.15742 -10.66208 -10.38398 -9.45959 -8.52574 -8.16732 -6.31125 1.16388 1.40230 1.43491 1.54285 1.65680 2.40687 3.05123 3.13346 3.50883 3.71309 4.04695 4.23067 4.28909 4.48077 4.51363 4.54005 4.62158 4.68890 4.77653 4.81536 4.88307 4.91713 5.01741 5.06591 5.09401 5.22589 5.47825 5.65307 5.79245 5.81595 6.08001 6.19497 6.77883 7.38034 8.89696 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.049826 B = 0.007312 C = 0.006936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.822784 B = 3828.573135 C = 4035.954815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.531 5.531 3 C 0.040 3.960 4 C -0.109 4.109 5 C -0.001 4.001 6 C -0.102 4.102 7 C 0.045 3.955 8 H 0.006 0.994 9 C -0.530 4.530 10 H 0.063 0.937 11 C 0.015 3.985 12 N -0.918 5.918 13 Si 0.959 3.041 14 H -0.263 1.263 15 H -0.281 1.281 16 H -0.281 1.281 17 C -0.017 4.017 18 S -0.352 6.352 19 C 0.061 3.939 20 H 0.036 0.964 21 H 0.070 0.930 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.263 0.737 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.655 6.321 5.906 13.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.256 5.256 3 C -0.088 4.088 4 C -0.148 4.148 5 C -0.111 4.111 6 C -0.141 4.141 7 C 0.025 3.975 8 H 0.024 0.976 9 C -0.569 4.569 10 H 0.081 0.919 11 C -0.185 4.185 12 N -0.557 5.557 13 Si 0.785 3.215 14 H -0.187 1.187 15 H -0.207 1.207 16 H -0.207 1.207 17 C -0.165 4.165 18 S -0.123 6.123 19 C -0.068 4.068 20 H 0.054 0.946 21 H 0.089 0.911 22 H 0.102 0.898 23 H 0.113 0.887 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.400 5.118 7.363 13.732 hybrid contribution 0.750 1.008 -2.431 2.736 sum -9.651 6.126 4.932 12.450 Atomic orbital electron populations 1.22563 0.86375 1.02726 1.01735 1.65414 1.09688 1.15949 1.34499 1.23218 0.93856 0.89710 1.01990 1.22649 0.98154 0.94822 0.99212 1.23243 0.95256 0.95821 0.96791 1.22075 0.98443 1.01254 0.92281 1.19509 0.90935 0.94764 0.92333 0.97590 1.21499 1.10402 1.03524 1.21500 0.91921 1.25810 0.98491 0.95486 0.98708 1.70062 1.25726 1.16041 1.43823 0.85476 0.78372 0.78938 0.78727 1.18726 1.20696 1.20735 1.24334 0.96906 1.02500 0.92741 1.87339 1.21211 1.58941 1.44823 1.23043 0.91638 1.00072 0.92059 0.94558 0.91106 0.89821 0.88696 0.92230 0.90647 0.89723 0.91214 0.91386 0.92749 0.90294 0.92240 0.91700 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.52 127.69 1.22 1.50 16 2 N -0.53 -14.23 5.66 -908.24 -5.14 -19.37 16 3 C 0.04 0.96 6.53 86.53 0.56 1.53 16 4 C -0.11 -3.21 6.37 31.22 0.20 -3.01 16 5 C 0.00 -0.03 1.10 -10.78 -0.01 -0.04 16 6 C -0.10 -4.02 5.31 30.55 0.16 -3.86 16 7 C 0.05 2.22 2.47 -10.68 -0.03 2.19 16 8 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 9 C -0.53 -28.01 8.43 25.60 0.22 -27.80 16 10 H 0.06 3.20 7.54 -2.91 -0.02 3.18 16 11 C 0.01 0.80 5.31 84.66 0.45 1.25 16 12 N -0.92 -52.19 11.82 21.45 0.25 -51.94 16 13 Si 0.96 42.23 29.54 68.60 2.03 44.26 16 14 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 15 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 17 C -0.02 -0.81 6.18 72.76 0.45 -0.36 16 18 S -0.35 -14.91 21.61 -56.49 -1.22 -16.13 16 19 C 0.06 1.87 5.60 86.02 0.48 2.36 16 20 H 0.04 0.66 7.98 -2.39 -0.02 0.64 16 21 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 22 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.06 1.23 7.96 -2.38 -0.02 1.21 16 25 H 0.07 2.38 7.64 -2.39 -0.02 2.36 16 26 H 0.08 2.34 7.19 -2.39 -0.02 2.32 16 27 H 0.07 2.68 6.62 -2.39 -0.02 2.66 16 28 H 0.07 2.52 7.31 -2.39 -0.02 2.50 16 29 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.08 4.28 7.12 -2.38 -0.02 4.27 16 31 H 0.06 2.93 8.09 -2.39 -0.02 2.91 16 32 H 0.07 1.81 7.28 -2.39 -0.02 1.79 16 33 H 0.08 2.59 7.79 -2.39 -0.02 2.57 16 Total: -1.00 -58.70 270.17 0.69 -58.01 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.07 Total: 11.41 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 3.70 Total: -26.24 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -4.89 Total: -71.31 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: -14.91 SS G_CDS: -1.22 Total: -16.13 kcal Total: -58.70 0.69 -58.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259699998.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.810 kcal (2) G-P(sol) polarization free energy of solvation -58.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds