Wall clock time and date at job start Mon Mar 30 2020 03:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47615 * 111.00191 * 2 1 4 4 C 1.52758 * 87.73237 * 221.86507 * 3 2 1 5 5 C 1.47618 * 111.00084 * 263.81732 * 2 1 3 6 6 C 1.52476 * 114.55775 * 271.06371 * 4 3 2 7 7 C 1.52804 * 109.77340 * 286.35701 * 6 4 3 8 8 H 1.08998 * 109.21368 * 52.61180 * 7 6 4 9 9 C 1.50698 * 109.21153 * 171.93354 * 7 6 4 10 10 H 1.07999 * 119.99907 * 36.61935 * 9 7 6 11 11 C 1.37879 * 120.00371 * 216.62337 * 9 7 6 12 12 N 1.31513 * 120.00139 * 185.13492 * 11 9 7 13 13 Si 1.86802 * 119.99552 * 5.13207 * 11 9 7 14 14 H 1.48497 * 109.47259 * 84.90314 * 13 11 9 15 15 H 1.48502 * 109.46898 * 204.90213 * 13 11 9 16 16 H 1.48495 * 109.47189 * 324.89975 * 13 11 9 17 17 C 1.52534 * 110.79701 * 292.27138 * 7 6 4 18 18 C 1.53158 * 110.21672 * 72.55500 * 17 7 6 19 19 S 1.81320 * 113.98324 * 139.32154 * 4 3 2 20 20 H 1.09004 * 109.47464 * 59.99903 * 1 2 3 21 21 H 1.09001 * 109.47399 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46768 * 300.00133 * 1 2 3 23 23 H 1.09000 * 113.50984 * 336.57766 * 3 2 1 24 24 H 1.09006 * 113.50923 * 107.15023 * 3 2 1 25 25 H 1.09002 * 113.51122 * 252.85450 * 5 2 1 26 26 H 1.09000 * 113.51069 * 23.35663 * 5 2 1 27 27 H 1.08999 * 109.41659 * 46.44773 * 6 4 3 28 28 H 1.09001 * 109.41981 * 166.26189 * 6 4 3 29 29 H 0.96999 * 119.99785 * 179.97438 * 12 11 9 30 30 H 1.09000 * 109.34581 * 312.32200 * 17 7 6 31 31 H 1.09008 * 109.22055 * 192.70634 * 17 7 6 32 32 H 1.09000 * 109.62549 * 175.55223 * 18 17 7 33 33 H 1.09001 * 109.62910 * 54.98338 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9980 1.3781 0.0000 4 6 3.0375 0.9143 -1.0187 5 6 1.9980 -0.1484 -1.3701 6 6 4.3228 0.3664 -0.4080 7 6 5.1594 1.5156 0.1527 8 1 4.5427 2.1147 0.8226 9 6 6.3238 0.9505 0.9248 10 1 6.8167 0.0539 0.5792 11 6 6.7597 1.5781 2.0725 12 7 7.8367 1.1448 2.6903 13 14 5.8204 3.0440 2.7496 14 1 4.7040 2.5649 3.6036 15 1 6.7361 3.8875 3.5592 16 1 5.2747 3.8448 1.6245 17 6 5.6855 2.4015 -0.9720 18 6 4.5462 3.2351 -1.5660 19 16 3.3508 2.1075 -2.3475 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.2976 2.1127 -0.3973 24 1 2.4290 1.6784 0.9551 25 1 2.4289 -1.1303 -1.5659 26 1 1.2972 0.1664 -2.1433 27 1 4.0752 -0.3273 0.3955 28 1 4.8938 -0.1572 -1.1746 29 1 8.1436 1.5866 3.4975 30 1 6.1196 1.7756 -1.7517 31 1 6.4518 3.0678 -0.5755 32 1 4.9455 3.9207 -2.3136 33 1 4.0537 3.7992 -0.7740 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259766301.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:22 Heat of formation + Delta-G solvation = 27.218049 kcal Electronic energy + Delta-G solvation = -14462.836777 eV Core-core repulsion = 12229.367610 eV Total energy + Delta-G solvation = -2233.469167 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.18009 -35.89147 -32.18510 -31.14022 -28.71741 -26.01044 -25.89693 -23.24895 -22.64289 -19.75228 -18.77237 -17.13408 -16.56242 -15.31302 -14.97154 -14.67324 -14.36044 -13.42603 -13.16721 -13.12311 -12.78559 -12.39139 -12.31936 -12.12102 -11.67722 -11.35755 -11.01847 -10.85899 -10.69957 -10.44414 -9.96182 -9.78646 -9.62315 -9.14935 -9.04147 -8.67063 -8.55307 -7.30581 -6.10894 -4.10213 2.18298 2.87167 3.24945 3.33013 3.33897 4.22232 4.38164 4.51182 4.99419 5.08855 5.15886 5.28486 5.41366 5.52196 5.54371 5.64097 5.78419 5.82677 5.92778 6.01604 6.11639 6.21766 6.32939 6.43809 6.67974 6.79025 6.85297 7.08555 7.27161 7.42505 7.72181 8.48545 8.94861 9.52060 11.02508 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.010539 C = 0.009197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.855448 B = 2656.270855 C = 3043.623440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.466 5.466 3 C 0.010 3.990 4 C -0.043 4.043 5 C 0.025 3.975 6 C -0.074 4.074 7 C 0.011 3.989 8 H 0.031 0.969 9 C -0.509 4.509 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.899 5.899 13 Si 0.874 3.126 14 H -0.275 1.275 15 H -0.290 1.290 16 H -0.265 1.265 17 C -0.113 4.113 18 C -0.074 4.074 19 S -0.283 6.283 20 H 0.034 0.966 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.264 0.736 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.042 1.823 -7.029 14.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.189 5.189 3 C -0.121 4.121 4 C -0.153 4.153 5 C -0.105 4.105 6 C -0.113 4.113 7 C -0.008 4.008 8 H 0.049 0.951 9 C -0.547 4.547 10 H 0.092 0.908 11 C -0.129 4.129 12 N -0.537 5.537 13 Si 0.701 3.299 14 H -0.201 1.201 15 H -0.216 1.216 16 H -0.190 1.190 17 C -0.153 4.153 18 C -0.222 4.222 19 S -0.054 6.054 20 H 0.053 0.947 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.093 0.907 24 H 0.110 0.890 25 H 0.112 0.888 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.184 1.430 -7.388 14.320 hybrid contribution -0.305 1.417 1.031 1.778 sum -12.489 2.847 -6.357 14.300 Atomic orbital electron populations 1.22898 0.89830 1.02301 1.01022 1.69013 1.08737 1.19182 1.21919 1.24133 0.95976 0.91475 1.00535 1.24019 0.98872 0.96640 0.95789 1.23719 0.95752 0.99611 0.91383 1.21460 0.90611 0.99509 0.99770 1.19097 0.95459 0.92654 0.93579 0.95076 1.20900 1.13510 1.12258 1.08008 0.90795 1.25048 0.94557 0.96713 0.96621 1.69902 1.22827 1.41664 1.19279 0.86910 0.80182 0.83424 0.79357 1.20104 1.21607 1.19032 1.22088 0.95595 0.98178 0.99392 1.23619 0.98214 0.98404 1.01969 1.86253 1.58943 1.33317 1.26893 0.94719 0.91107 0.91371 0.90747 0.88954 0.88818 0.91035 0.90189 0.91776 0.92635 0.91771 0.91431 0.89150 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.13 9.69 60.06 0.58 0.45 16 2 N -0.47 -7.06 6.54 -252.88 -1.65 -8.71 16 3 C 0.01 0.15 6.76 -7.12 -0.05 0.11 16 4 C -0.04 -0.72 1.08 -91.14 -0.10 -0.82 16 5 C 0.03 0.37 6.92 -7.12 -0.05 0.32 16 6 C -0.07 -1.48 4.25 -27.10 -0.12 -1.60 16 7 C 0.01 0.25 1.53 -92.11 -0.14 0.11 16 8 H 0.03 0.72 4.18 -51.93 -0.22 0.50 16 9 C -0.51 -13.82 8.75 -34.44 -0.30 -14.12 16 10 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 11 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 13 Si 0.87 21.10 27.00 -169.99 -4.59 16.51 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.27 -6.04 6.79 56.52 0.38 -5.66 16 17 C -0.11 -2.30 5.00 -26.89 -0.13 -2.43 16 18 C -0.07 -1.27 6.48 37.24 0.24 -1.03 16 19 S -0.28 -4.71 21.64 -107.50 -2.33 -7.04 16 20 H 0.03 0.38 7.52 -51.93 -0.39 -0.01 16 21 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.07 1.08 7.86 -51.93 -0.41 0.68 16 24 H 0.09 1.63 7.32 -51.93 -0.38 1.25 16 25 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 26 H 0.07 0.96 7.50 -51.93 -0.39 0.57 16 27 H 0.08 1.69 7.98 -51.93 -0.41 1.28 16 28 H 0.06 1.28 8.09 -51.93 -0.42 0.86 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.06 1.29 8.07 -51.93 -0.42 0.88 16 31 H 0.07 1.44 8.05 -51.92 -0.42 1.02 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 LS Contribution 269.66 15.07 4.06 4.06 Total: -1.00 -28.67 269.66 -9.04 -37.70 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.14 Total: 0.85 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -0.16 Total: -17.07 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: -0.88 Total: -35.01 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.59 Total: 16.51 kcal Atomic # 16 Polarization: -4.71 SS G_CDS: -2.33 Total: -7.04 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.67 -9.04 -37.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259766301.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.923 kcal (2) G-P(sol) polarization free energy of solvation -28.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds