Wall clock time and date at job start Mon Mar 30 2020 03:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47615 * 111.00191 * 2 1 4 4 C 1.52758 * 87.73237 * 221.86507 * 3 2 1 5 5 C 1.47618 * 111.00084 * 263.81732 * 2 1 3 6 6 C 1.52476 * 114.55775 * 271.06371 * 4 3 2 7 7 C 1.52804 * 109.77340 * 286.35701 * 6 4 3 8 8 H 1.08998 * 109.21368 * 52.61180 * 7 6 4 9 9 C 1.50698 * 109.21153 * 171.93354 * 7 6 4 10 10 H 1.07999 * 119.99907 * 36.61935 * 9 7 6 11 11 C 1.37879 * 120.00371 * 216.62337 * 9 7 6 12 12 N 1.31513 * 120.00139 * 185.13492 * 11 9 7 13 13 Si 1.86802 * 119.99552 * 5.13207 * 11 9 7 14 14 H 1.48497 * 109.47259 * 84.90314 * 13 11 9 15 15 H 1.48502 * 109.46898 * 204.90213 * 13 11 9 16 16 H 1.48495 * 109.47189 * 324.89975 * 13 11 9 17 17 C 1.52534 * 110.79701 * 292.27138 * 7 6 4 18 18 C 1.53158 * 110.21672 * 72.55500 * 17 7 6 19 19 S 1.81320 * 113.98324 * 139.32154 * 4 3 2 20 20 H 1.09004 * 109.47464 * 59.99903 * 1 2 3 21 21 H 1.09001 * 109.47399 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46768 * 300.00133 * 1 2 3 23 23 H 1.09000 * 113.50984 * 336.57766 * 3 2 1 24 24 H 1.09006 * 113.50923 * 107.15023 * 3 2 1 25 25 H 1.09002 * 113.51122 * 252.85450 * 5 2 1 26 26 H 1.09000 * 113.51069 * 23.35663 * 5 2 1 27 27 H 1.08999 * 109.41659 * 46.44773 * 6 4 3 28 28 H 1.09001 * 109.41981 * 166.26189 * 6 4 3 29 29 H 0.96999 * 119.99785 * 179.97438 * 12 11 9 30 30 H 1.09000 * 109.34581 * 312.32200 * 17 7 6 31 31 H 1.09008 * 109.22055 * 192.70634 * 17 7 6 32 32 H 1.09000 * 109.62549 * 175.55223 * 18 17 7 33 33 H 1.09001 * 109.62910 * 54.98338 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9980 1.3781 0.0000 4 6 3.0375 0.9143 -1.0187 5 6 1.9980 -0.1484 -1.3701 6 6 4.3228 0.3664 -0.4080 7 6 5.1594 1.5156 0.1527 8 1 4.5427 2.1147 0.8226 9 6 6.3238 0.9505 0.9248 10 1 6.8167 0.0539 0.5792 11 6 6.7597 1.5781 2.0725 12 7 7.8367 1.1448 2.6903 13 14 5.8204 3.0440 2.7496 14 1 4.7040 2.5649 3.6036 15 1 6.7361 3.8875 3.5592 16 1 5.2747 3.8448 1.6245 17 6 5.6855 2.4015 -0.9720 18 6 4.5462 3.2351 -1.5660 19 16 3.3508 2.1075 -2.3475 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.2976 2.1127 -0.3973 24 1 2.4290 1.6784 0.9551 25 1 2.4289 -1.1303 -1.5659 26 1 1.2972 0.1664 -2.1433 27 1 4.0752 -0.3273 0.3955 28 1 4.8938 -0.1572 -1.1746 29 1 8.1436 1.5866 3.4975 30 1 6.1196 1.7756 -1.7517 31 1 6.4518 3.0678 -0.5755 32 1 4.9455 3.9207 -2.3136 33 1 4.0537 3.7992 -0.7740 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259766301.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:21 Heat of formation + Delta-G solvation = 7.807587 kcal Electronic energy + Delta-G solvation = -14463.678478 eV Core-core repulsion = 12229.367610 eV Total energy + Delta-G solvation = -2234.310868 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.41113 -37.57574 -34.26478 -32.42368 -30.30132 -27.56247 -27.14144 -24.77661 -24.08032 -21.40502 -20.17619 -19.11852 -17.92818 -16.59755 -16.46775 -16.13307 -15.78711 -14.99076 -14.75321 -14.58583 -14.46040 -13.88987 -13.70464 -13.37754 -13.11083 -12.87196 -12.69930 -12.35290 -12.13393 -11.85820 -11.78949 -11.53235 -11.27804 -10.98940 -10.67715 -10.53642 -9.84446 -8.61470 -8.29576 -6.33275 0.86059 1.33065 1.33785 1.44084 1.52258 2.33437 3.04039 3.08022 3.25094 3.76104 4.00372 4.04925 4.08227 4.19123 4.37906 4.46984 4.50559 4.58569 4.62624 4.70393 4.81744 4.83064 4.96399 5.01983 5.14637 5.15950 5.25768 5.48689 5.65962 5.72603 6.03435 6.30629 6.73926 7.32357 8.87598 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.010539 C = 0.009197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.855448 B = 2656.270855 C = 3043.623440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.488 5.488 3 C 0.015 3.985 4 C -0.054 4.054 5 C 0.037 3.963 6 C -0.066 4.066 7 C 0.013 3.987 8 H 0.032 0.968 9 C -0.512 4.512 10 H 0.029 0.971 11 C 0.013 3.987 12 N -0.950 5.950 13 Si 0.937 3.063 14 H -0.270 1.270 15 H -0.290 1.290 16 H -0.239 1.239 17 C -0.109 4.109 18 C -0.073 4.073 19 S -0.260 6.260 20 H 0.049 0.951 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.095 0.905 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.265 0.735 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.116 0.884 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.674 3.333 -8.177 17.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.211 5.211 3 C -0.116 4.116 4 C -0.164 4.164 5 C -0.093 4.093 6 C -0.105 4.105 7 C -0.006 4.006 8 H 0.050 0.950 9 C -0.550 4.550 10 H 0.048 0.952 11 C -0.184 4.184 12 N -0.590 5.590 13 Si 0.761 3.239 14 H -0.195 1.195 15 H -0.216 1.216 16 H -0.162 1.162 17 C -0.149 4.149 18 C -0.221 4.221 19 S -0.031 6.031 20 H 0.068 0.932 21 H 0.099 0.901 22 H 0.092 0.908 23 H 0.113 0.887 24 H 0.090 0.910 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.838 2.937 -8.563 17.381 hybrid contribution 0.558 0.819 1.352 1.676 sum -14.280 3.756 -7.211 16.433 Atomic orbital electron populations 1.22961 0.87628 1.03388 1.02034 1.68988 1.11120 1.18629 1.22321 1.24085 0.95884 0.92476 0.99111 1.23926 0.97727 0.98055 0.96702 1.23691 0.95035 0.98811 0.91794 1.21200 0.92082 0.98210 0.98988 1.19050 0.93864 0.93689 0.93993 0.95010 1.21190 1.14537 1.10743 1.08507 0.95214 1.25919 0.95394 1.00066 0.97022 1.70059 1.25011 1.43817 1.20153 0.85880 0.78765 0.79908 0.79329 1.19497 1.21587 1.16224 1.21892 0.96604 0.97946 0.98437 1.23560 0.97195 0.98455 1.02905 1.86187 1.58207 1.32507 1.26206 0.93214 0.90055 0.90792 0.88696 0.90959 0.88803 0.88985 0.92174 0.92642 0.92621 0.92266 0.92714 0.86548 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.22 9.69 127.69 1.24 1.01 16 2 N -0.49 -13.59 6.54 -953.98 -6.24 -19.83 16 3 C 0.02 0.45 6.76 83.78 0.57 1.02 16 4 C -0.05 -1.70 1.08 -11.13 -0.01 -1.71 16 5 C 0.04 0.97 6.92 83.78 0.58 1.55 16 6 C -0.07 -2.61 4.25 30.36 0.13 -2.48 16 7 C 0.01 0.58 1.53 -11.76 -0.02 0.56 16 8 H 0.03 1.42 4.18 -2.39 -0.01 1.41 16 9 C -0.51 -28.77 8.75 25.60 0.22 -28.54 16 10 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 11 C 0.01 0.74 5.47 84.66 0.46 1.20 16 12 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 13 Si 0.94 43.49 27.00 68.60 1.85 45.34 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 15 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 16 H -0.24 -9.97 6.79 99.48 0.68 -9.29 16 17 C -0.11 -4.32 5.00 30.49 0.15 -4.17 16 18 C -0.07 -2.29 6.48 72.04 0.47 -1.83 16 19 S -0.26 -7.82 21.64 -56.49 -1.22 -9.04 16 20 H 0.05 0.87 7.52 -2.38 -0.02 0.86 16 21 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 22 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.10 2.39 7.86 -2.39 -0.02 2.37 16 24 H 0.07 2.41 7.32 -2.38 -0.02 2.40 16 25 H 0.09 2.48 8.11 -2.39 -0.02 2.46 16 26 H 0.09 2.08 7.50 -2.39 -0.02 2.06 16 27 H 0.06 2.59 7.98 -2.39 -0.02 2.57 16 28 H 0.05 2.25 8.09 -2.39 -0.02 2.23 16 29 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.06 2.36 8.07 -2.39 -0.02 2.34 16 31 H 0.05 2.28 8.05 -2.38 -0.02 2.26 16 32 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.08 2.47 8.12 -2.39 -0.02 2.45 16 Total: -1.00 -62.99 269.66 -0.49 -63.48 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 1.04 Total: 12.46 kcal Atomic # 6 Polarization: -37.17 SS G_CDS: 3.79 Total: -33.38 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -5.94 Total: -78.85 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.85 Total: 45.34 kcal Atomic # 16 Polarization: -7.82 SS G_CDS: -1.22 Total: -9.04 kcal Total: -62.99 -0.49 -63.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259766301.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.283 kcal (2) G-P(sol) polarization free energy of solvation -62.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds