Wall clock time and date at job start Mon Mar 30 2020 03:12:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86794 * 120.00464 * 2 1
4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1
5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1
6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1
7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1
10 10 H 1.09001 * 110.27160 * 57.63242 * 9 7 2
11 11 C 1.54597 * 110.30622 * 295.43709 * 9 7 2
12 12 C 1.54935 * 102.91985 * 219.12632 * 11 9 7
13 13 N 1.48534 * 103.22584 * 37.41617 * 12 11 9
14 14 C 1.46908 * 110.99950 * 200.28005 * 13 12 11
15 15 H 1.09004 * 108.84780 * 68.09446 * 14 13 12
16 16 C 1.52940 * 108.88413 * 309.51866 * 14 13 12
17 17 C 1.55002 * 109.04164 * 208.99327 * 16 14 13
18 18 S 1.83991 * 100.81740 * 41.60720 * 17 16 14
19 19 C 1.53705 * 108.88686 * 186.67334 * 14 13 12
20 20 C 1.47903 * 105.82204 * 320.78866 * 13 12 11
21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3
22 22 H 1.08997 * 110.72254 * 337.48643 * 11 9 7
23 23 H 1.08999 * 110.72468 * 100.76999 * 11 9 7
24 24 H 1.08995 * 110.66932 * 278.98371 * 12 11 9
25 25 H 1.09001 * 110.81129 * 155.91518 * 12 11 9
26 26 H 1.08998 * 109.60256 * 329.03274 * 16 14 13
27 27 H 1.08999 * 109.60435 * 89.18041 * 16 14 13
28 28 H 1.09002 * 111.23362 * 283.70674 * 17 16 14
29 29 H 1.08990 * 111.14624 * 159.47954 * 17 16 14
30 30 H 1.09002 * 110.33963 * 242.48777 * 19 14 13
31 31 H 1.08997 * 110.34455 * 4.74091 * 19 14 13
32 32 H 1.08999 * 109.91847 * 265.98196 * 20 13 12
33 33 H 1.08998 * 109.91849 * 144.68523 * 20 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 2.4968 2.0463 -1.4001
5 1 1.4467 2.6526 0.6999
6 1 3.5468 1.4401 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2509 -2.4992 -0.0054
10 1 0.5917 -2.5508 -0.8719
11 6 0.4377 -2.6551 1.3002
12 6 0.6024 -4.1592 1.6334
13 7 2.0057 -4.4432 1.2381
14 6 2.2116 -5.8820 1.0247
15 1 1.6534 -6.1903 0.1406
16 6 1.6772 -6.6439 2.2383
17 6 2.4812 -7.9587 2.4043
18 16 4.1886 -7.3650 2.0612
19 6 3.7076 -6.1402 0.7838
20 6 2.2344 -3.6842 -0.0106
21 1 -0.4850 0.8401 -0.0004
22 1 0.8582 -2.0361 2.0927
23 1 -0.6110 -2.4096 1.1330
24 1 -0.0917 -4.7613 1.0472
25 1 0.4593 -4.3377 2.6991
26 1 1.7881 -6.0310 3.1328
27 1 0.6236 -6.8790 2.0876
28 1 2.1709 -8.7060 1.6740
29 1 2.3964 -8.3459 3.4196
30 1 3.8654 -6.5510 -0.2134
31 1 4.2761 -5.2188 0.9092
32 1 2.0425 -4.3222 -0.8733
33 1 3.2598 -3.3157 -0.0387
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259822429.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:50
Heat of formation + Delta-G solvation = -1.262472 kcal
Electronic energy + Delta-G solvation = -14128.425792 eV
Core-core repulsion = 11893.721617 eV
Total energy + Delta-G solvation = -2234.704175 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 227.104 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-38.76060 -35.16867 -32.54078 -30.32596 -28.82981 -27.48014 -25.08115 -23.47139
-21.20674 -19.50646 -19.30079 -16.62244 -16.59831 -15.97797 -14.78552 -14.45121
-14.24224 -13.85999 -13.02252 -12.96014 -12.40550 -12.23455 -11.80320 -11.69183
-11.54910 -11.04208 -10.99779 -10.74888 -10.62769 -10.56819 -10.32119 -9.79259
-9.69717 -9.31643 -8.81408 -8.41471 -7.82207 -7.61902 -6.02435 -4.04232
1.93065 2.39528 3.31164 3.38077 3.42212 4.34544 4.44868 4.63222
4.89773 5.08761 5.18603 5.30753 5.34898 5.52081 5.58763 5.71464
5.79138 5.94566 6.06778 6.11740 6.18711 6.23186 6.50893 6.82184
7.08163 7.14774 7.38981 7.60830 7.69462 7.87804 7.99365 8.42109
8.97116 9.59417 11.07723
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.051623 B = 0.006346 C = 0.005912
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 542.259353 B = 4410.923122 C = 4735.046734
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.061 3.939
3 Si 0.891 3.109
4 H -0.282 1.282
5 H -0.287 1.287
6 H -0.274 1.274
7 C -0.507 4.507
8 H 0.057 0.943
9 C 0.040 3.960
10 H 0.030 0.970
11 C -0.092 4.092
12 C 0.029 3.971
13 N -0.507 5.507
14 C 0.071 3.929
15 H 0.044 0.956
16 C -0.121 4.121
17 C -0.065 4.065
18 S -0.305 6.305
19 C -0.054 4.054
20 C 0.043 3.957
21 H 0.259 0.741
22 H 0.062 0.938
23 H 0.059 0.941
24 H 0.029 0.971
25 H 0.065 0.935
26 H 0.091 0.909
27 H 0.076 0.924
28 H 0.086 0.914
29 H 0.103 0.897
30 H 0.084 0.916
31 H 0.112 0.888
32 H 0.020 0.980
33 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.895 -12.869 2.876 13.322
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.530 5.530
2 C -0.141 4.141
3 Si 0.719 3.281
4 H -0.208 1.208
5 H -0.213 1.213
6 H -0.198 1.198
7 C -0.546 4.546
8 H 0.075 0.925
9 C 0.021 3.979
10 H 0.048 0.952
11 C -0.130 4.130
12 C -0.098 4.098
13 N -0.231 5.231
14 C -0.040 4.040
15 H 0.061 0.939
16 C -0.160 4.160
17 C -0.214 4.214
18 S -0.080 6.080
19 C -0.203 4.203
20 C -0.084 4.084
21 H 0.069 0.931
22 H 0.081 0.919
23 H 0.078 0.922
24 H 0.047 0.953
25 H 0.084 0.916
26 H 0.109 0.891
27 H 0.095 0.905
28 H 0.105 0.895
29 H 0.122 0.878
30 H 0.103 0.897
31 H 0.130 0.870
32 H 0.039 0.961
33 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 3.196 -12.901 3.731 13.804
hybrid contribution -1.229 0.959 -1.190 1.961
sum 1.966 -11.942 2.541 12.366
Atomic orbital electron populations
1.69965 1.05913 1.26499 1.50673 1.24979 0.94851 0.99091 0.95138
0.86611 0.79970 0.83522 0.78023 1.20780 1.21297 1.19840 1.21171
0.92733 0.90139 1.50539 0.92464 1.19489 0.92459 0.91909 0.94000
0.95221 1.22411 1.00305 0.90393 0.99922 1.23366 0.87877 0.99504
0.99090 1.64958 1.23597 1.03581 1.31009 1.22264 0.93568 0.91424
0.96735 0.93852 1.22458 0.99519 0.94116 0.99909 1.24243 0.92457
0.99690 1.04992 1.87681 1.15376 1.50363 1.54533 1.24004 0.98175
1.00172 0.97917 1.23153 1.02026 0.95502 0.87722 0.93087 0.91873
0.92231 0.95300 0.91627 0.89076 0.90517 0.89518 0.87811 0.89725
0.87001 0.96135 0.90961
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.42 12.63 55.43 0.70 -24.72 16
2 C 0.06 1.68 5.34 -17.82 -0.10 1.58 16
3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16
4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
6 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16
7 C -0.51 -13.79 8.37 -34.44 -0.29 -14.07 16
8 H 0.06 1.55 7.34 -52.49 -0.39 1.16 16
9 C 0.04 0.99 2.87 -90.41 -0.26 0.73 16
10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16
11 C -0.09 -2.09 5.76 -24.87 -0.14 -2.24 16
12 C 0.03 0.54 5.43 -1.90 -0.01 0.53 16
13 N -0.51 -9.31 4.92 -222.09 -1.09 -10.40 16
14 C 0.07 1.06 2.29 -67.37 -0.15 0.90 16
15 H 0.04 0.65 7.76 -51.93 -0.40 0.25 16
16 C -0.12 -1.52 4.70 -25.70 -0.12 -1.64 16
17 C -0.07 -0.72 7.52 38.21 0.29 -0.43 16
18 S -0.30 -4.24 23.22 -107.50 -2.50 -6.73 16
19 C -0.05 -0.78 6.65 37.52 0.25 -0.53 16
20 C 0.04 0.88 5.61 -2.75 -0.02 0.87 16
21 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16
22 H 0.06 1.57 7.86 -51.93 -0.41 1.16 16
23 H 0.06 1.42 8.12 -51.93 -0.42 1.00 16
24 H 0.03 0.50 8.02 -51.93 -0.42 0.09 16
25 H 0.07 1.11 7.52 -51.93 -0.39 0.72 16
26 H 0.09 1.26 7.49 -51.93 -0.39 0.87 16
27 H 0.08 0.87 8.10 -51.93 -0.42 0.44 16
28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
29 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16
30 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16
31 H 0.11 1.77 7.55 -51.93 -0.39 1.38 16
32 H 0.02 0.39 7.54 -51.93 -0.39 0.00 16
33 H 0.07 1.53 7.29 -51.93 -0.38 1.15 16
LS Contribution 271.65 15.07 4.09 4.09
Total: -1.00 -28.04 271.65 -9.59 -37.63
By element:
Atomic # 1 Polarization: 3.40 SS G_CDS: -5.22 Total: -1.82 kcal
Atomic # 6 Polarization: -13.75 SS G_CDS: -0.55 Total: -14.30 kcal
Atomic # 7 Polarization: -34.72 SS G_CDS: -0.39 Total: -35.12 kcal
Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal
Atomic # 16 Polarization: -4.24 SS G_CDS: -2.50 Total: -6.73 kcal
Total LS contribution 4.09 Total: 4.09 kcal
Total: -28.04 -9.59 -37.63 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259822429.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.363 kcal
(2) G-P(sol) polarization free energy of solvation -28.036 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.327 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.626 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.262 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds