Wall clock time and date at job start Mon Mar 30 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99904 * 2 1 4 4 H 1.48504 * 109.46766 * 239.99758 * 3 2 1 5 5 H 1.48503 * 109.47338 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47516 * 120.00142 * 3 2 1 7 7 C 1.37875 * 120.00437 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00509 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99687 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.40902 * 299.84091 * 9 7 2 11 11 C 1.53251 * 109.40319 * 59.60575 * 9 7 2 12 12 S 1.81902 * 108.50211 * 182.12144 * 11 9 7 13 13 C 1.81902 * 101.91457 * 308.69506 * 12 11 9 14 14 C 1.53243 * 108.50772 * 51.30788 * 13 12 11 15 15 N 1.46468 * 109.40492 * 180.02562 * 9 7 2 16 16 C 1.46899 * 111.00016 * 42.11888 * 15 9 7 17 17 C 1.52997 * 109.47254 * 169.99787 * 16 15 9 18 18 C 1.53000 * 117.50165 * 243.62147 * 17 16 15 19 19 C 1.52994 * 59.99907 * 252.50793 * 18 17 16 20 20 H 0.97005 * 120.00257 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.63164 * 301.82195 * 11 9 7 22 22 H 1.09002 * 109.63245 * 62.42057 * 11 9 7 23 23 H 1.08997 * 109.62830 * 171.01152 * 13 12 11 24 24 H 1.09000 * 109.63014 * 291.40266 * 13 12 11 25 25 H 1.08996 * 109.40905 * 177.88070 * 14 13 12 26 26 H 1.09000 * 109.40703 * 58.10804 * 14 13 12 27 27 H 1.09002 * 109.47043 * 289.99858 * 16 15 9 28 28 H 1.09001 * 109.47354 * 49.99919 * 16 15 9 29 29 H 1.09003 * 115.54795 * 29.32512 * 17 16 15 30 30 H 1.09001 * 117.49810 * 359.97438 * 18 17 16 31 31 H 1.08995 * 117.50134 * 145.01745 * 18 17 16 32 32 H 1.09004 * 117.49933 * 252.50827 * 19 18 17 33 33 H 1.09002 * 117.49788 * 107.49222 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6273 -2.5564 0.8938 11 6 0.3627 -2.5752 -1.2447 12 16 -0.5815 -4.1290 -1.1867 13 6 0.7305 -5.3550 -0.8961 14 6 1.5682 -4.8962 0.3023 15 7 2.2042 -3.6113 0.0027 16 6 3.3191 -3.3482 0.9222 17 6 4.1549 -4.6191 1.0871 18 6 4.2144 -5.2498 2.4798 19 6 5.4358 -4.5195 1.9179 20 1 -0.4851 0.8401 -0.0004 21 1 -0.3247 -1.7294 -1.2567 22 1 0.9849 -2.5580 -2.1395 23 1 0.2835 -6.3254 -0.6803 24 1 1.3627 -5.4315 -1.7807 25 1 2.3366 -5.6400 0.5131 26 1 0.9233 -4.7861 1.1741 27 1 3.9441 -2.5523 0.5172 28 1 2.9261 -3.0435 1.8922 29 1 4.1626 -5.2913 0.2291 30 1 3.6585 -4.7591 3.2787 31 1 4.2611 -6.3372 2.5383 32 1 6.2860 -5.1264 1.6067 33 1 5.6831 -3.5485 2.3471 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259919538.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:51 Heat of formation + Delta-G solvation = 31.380811 kcal Electronic energy + Delta-G solvation = -14342.273062 eV Core-core repulsion = 12108.984406 eV Total energy + Delta-G solvation = -2233.288656 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.34749 -35.99593 -33.07978 -30.42404 -29.35944 -25.44159 -24.76103 -22.60393 -22.02265 -20.05624 -19.39694 -16.88226 -15.67120 -15.36058 -14.92691 -14.27752 -14.09117 -13.72770 -13.06444 -12.88410 -12.68467 -12.01362 -11.72019 -11.49895 -11.30173 -11.08218 -10.90987 -10.81132 -10.52865 -10.35992 -10.17175 -9.99401 -9.65139 -9.21594 -8.65532 -8.49513 -7.30346 -6.82402 -6.15894 -4.24158 2.74620 3.23975 3.29946 3.31638 3.60133 4.04146 4.29550 4.68566 5.05963 5.16601 5.19767 5.28954 5.59113 5.74591 5.78834 5.81935 5.86688 6.07209 6.18538 6.24130 6.28981 6.39641 6.50380 6.63698 6.71507 6.83288 7.20086 7.51626 7.64024 7.87689 8.13727 8.42228 8.82837 9.42502 10.89461 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.019180 B = 0.012172 C = 0.007791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.494928 B = 2299.861944 C = 3592.946059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.070 0.930 9 C 0.222 3.778 10 H 0.014 0.986 11 C -0.035 4.035 12 S -0.344 6.344 13 C -0.065 4.065 14 C 0.053 3.947 15 N -0.548 5.548 16 C 0.106 3.894 17 C -0.148 4.148 18 C -0.188 4.188 19 C -0.181 4.181 20 H 0.266 0.734 21 H 0.133 0.867 22 H 0.063 0.937 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.034 0.966 27 H 0.085 0.915 28 H 0.032 0.968 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.728 -7.941 1.721 9.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.088 0.912 9 C 0.114 3.886 10 H 0.032 0.968 11 C -0.183 4.183 12 S -0.117 6.117 13 C -0.214 4.214 14 C -0.076 4.076 15 N -0.273 5.273 16 C -0.021 4.021 17 C -0.166 4.166 18 C -0.225 4.225 19 C -0.219 4.219 20 H 0.076 0.924 21 H 0.151 0.849 22 H 0.082 0.918 23 H 0.107 0.893 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.052 0.948 27 H 0.103 0.897 28 H 0.050 0.950 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.596 -8.021 1.122 9.312 hybrid contribution 1.275 1.095 0.852 1.884 sum 5.871 -6.926 1.974 9.292 Atomic orbital electron populations 1.69813 1.05959 1.27209 1.49584 1.24992 0.94935 0.99452 0.94614 0.86515 0.79497 0.82463 0.78759 1.20030 1.21169 1.20169 1.21241 0.93469 0.89319 1.51515 0.91187 1.19338 0.89059 0.87648 0.92586 0.96796 1.23981 1.00163 0.92276 1.01874 1.86542 1.20518 1.08893 1.95786 1.23307 0.98044 0.98576 1.01471 1.22195 0.96846 0.93464 0.95139 1.61285 1.12035 1.02376 1.51613 1.21493 0.91918 0.94019 0.94704 1.22567 0.99287 1.00606 0.94171 1.23049 1.02479 0.99232 0.97788 1.22909 0.91896 1.02113 1.04941 0.92427 0.84947 0.91834 0.89346 0.90253 0.90593 0.94814 0.89672 0.95004 0.87558 0.89051 0.89433 0.89289 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.44 11.28 55.43 0.63 -23.82 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 3 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -13.42 7.94 -34.44 -0.27 -13.70 16 8 H 0.07 1.79 5.64 -52.49 -0.30 1.49 16 9 C 0.22 5.46 1.85 -68.97 -0.13 5.33 16 10 H 0.01 0.40 7.91 -51.93 -0.41 -0.01 16 11 C -0.03 -0.85 5.75 37.29 0.21 -0.63 16 12 S -0.34 -7.39 22.40 -107.50 -2.41 -9.79 16 13 C -0.07 -1.16 6.69 37.28 0.25 -0.91 16 14 C 0.05 0.98 5.15 -3.94 -0.02 0.96 16 15 N -0.55 -11.45 4.47 -228.44 -1.02 -12.47 16 16 C 0.11 2.02 4.67 -3.83 -0.02 2.00 16 17 C -0.15 -2.23 4.06 -90.62 -0.37 -2.60 16 18 C -0.19 -2.47 10.12 -26.73 -0.27 -2.74 16 19 C -0.18 -2.33 10.25 -26.74 -0.27 -2.61 16 20 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 21 H 0.13 3.55 6.00 -51.93 -0.31 3.24 16 22 H 0.06 1.55 8.14 -51.93 -0.42 1.12 16 23 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 24 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 25 H 0.08 1.20 5.49 -51.93 -0.29 0.92 16 26 H 0.03 0.67 7.91 -51.93 -0.41 0.26 16 27 H 0.09 1.72 6.17 -51.93 -0.32 1.40 16 28 H 0.03 0.65 7.81 -51.93 -0.41 0.24 16 29 H 0.11 1.59 7.34 -51.93 -0.38 1.20 16 30 H 0.09 1.24 8.03 -51.93 -0.42 0.83 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 270.26 15.07 4.07 4.07 Total: -1.00 -26.79 270.26 -9.64 -36.43 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.91 Total: 3.43 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -0.98 Total: -13.33 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: -0.40 Total: -36.29 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: -7.39 SS G_CDS: -2.41 Total: -9.79 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -26.79 -9.64 -36.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259919538.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.810 kcal (2) G-P(sol) polarization free energy of solvation -26.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds