Wall clock time and date at job start Mon Mar 30 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99904 * 2 1 4 4 H 1.48504 * 109.46766 * 239.99758 * 3 2 1 5 5 H 1.48503 * 109.47338 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47516 * 120.00142 * 3 2 1 7 7 C 1.37875 * 120.00437 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00509 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99687 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.40902 * 299.84091 * 9 7 2 11 11 C 1.53251 * 109.40319 * 59.60575 * 9 7 2 12 12 S 1.81902 * 108.50211 * 182.12144 * 11 9 7 13 13 C 1.81902 * 101.91457 * 308.69506 * 12 11 9 14 14 C 1.53243 * 108.50772 * 51.30788 * 13 12 11 15 15 N 1.46468 * 109.40492 * 180.02562 * 9 7 2 16 16 C 1.46899 * 111.00016 * 42.11888 * 15 9 7 17 17 C 1.52997 * 109.47254 * 169.99787 * 16 15 9 18 18 C 1.53000 * 117.50165 * 243.62147 * 17 16 15 19 19 C 1.52994 * 59.99907 * 252.50793 * 18 17 16 20 20 H 0.97005 * 120.00257 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.63164 * 301.82195 * 11 9 7 22 22 H 1.09002 * 109.63245 * 62.42057 * 11 9 7 23 23 H 1.08997 * 109.62830 * 171.01152 * 13 12 11 24 24 H 1.09000 * 109.63014 * 291.40266 * 13 12 11 25 25 H 1.08996 * 109.40905 * 177.88070 * 14 13 12 26 26 H 1.09000 * 109.40703 * 58.10804 * 14 13 12 27 27 H 1.09002 * 109.47043 * 289.99858 * 16 15 9 28 28 H 1.09001 * 109.47354 * 49.99919 * 16 15 9 29 29 H 1.09003 * 115.54795 * 29.32512 * 17 16 15 30 30 H 1.09001 * 117.49810 * 359.97438 * 18 17 16 31 31 H 1.08995 * 117.50134 * 145.01745 * 18 17 16 32 32 H 1.09004 * 117.49933 * 252.50827 * 19 18 17 33 33 H 1.09002 * 117.49788 * 107.49222 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6273 -2.5564 0.8938 11 6 0.3627 -2.5752 -1.2447 12 16 -0.5815 -4.1290 -1.1867 13 6 0.7305 -5.3550 -0.8961 14 6 1.5682 -4.8962 0.3023 15 7 2.2042 -3.6113 0.0027 16 6 3.3191 -3.3482 0.9222 17 6 4.1549 -4.6191 1.0871 18 6 4.2144 -5.2498 2.4798 19 6 5.4358 -4.5195 1.9179 20 1 -0.4851 0.8401 -0.0004 21 1 -0.3247 -1.7294 -1.2567 22 1 0.9849 -2.5580 -2.1395 23 1 0.2835 -6.3254 -0.6803 24 1 1.3627 -5.4315 -1.7807 25 1 2.3366 -5.6400 0.5131 26 1 0.9233 -4.7861 1.1741 27 1 3.9441 -2.5523 0.5172 28 1 2.9261 -3.0435 1.8922 29 1 4.1626 -5.2913 0.2291 30 1 3.6585 -4.7591 3.2787 31 1 4.2611 -6.3372 2.5383 32 1 6.2860 -5.1264 1.6067 33 1 5.6831 -3.5485 2.3471 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259919538.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:51 Heat of formation + Delta-G solvation = 15.970806 kcal Electronic energy + Delta-G solvation = -14342.941290 eV Core-core repulsion = 12108.984406 eV Total energy + Delta-G solvation = -2233.956884 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.83687 -37.38755 -34.97907 -32.09528 -31.11530 -27.40599 -26.32609 -24.13897 -23.12013 -21.72813 -20.86133 -18.72102 -17.48387 -16.78382 -16.67620 -15.88083 -15.64133 -15.17548 -14.63876 -14.56712 -14.43287 -13.70423 -13.26808 -13.05868 -12.87284 -12.75750 -12.39748 -12.29596 -12.27580 -12.15190 -11.96299 -11.22291 -11.15101 -10.68754 -10.59455 -10.34096 -9.04775 -8.57633 -8.18187 -6.34188 1.09083 1.41476 1.42868 1.50670 1.82382 2.38020 2.92371 3.07411 3.20225 3.88772 4.09791 4.09858 4.12375 4.32863 4.43608 4.52187 4.59395 4.68046 4.77963 4.81079 4.89188 4.93878 5.05438 5.08700 5.22970 5.31025 5.38829 5.54779 5.64527 5.98605 6.27692 6.64326 6.80743 7.36619 8.85921 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.019180 B = 0.012172 C = 0.007791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.494928 B = 2299.861944 C = 3592.946059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.530 4.530 8 H 0.072 0.928 9 C 0.231 3.769 10 H -0.030 1.030 11 C -0.030 4.030 12 S -0.359 6.359 13 C -0.053 4.053 14 C 0.055 3.945 15 N -0.550 5.550 16 C 0.110 3.890 17 C -0.163 4.163 18 C -0.177 4.177 19 C -0.168 4.168 20 H 0.265 0.735 21 H 0.102 0.898 22 H 0.056 0.944 23 H 0.125 0.875 24 H 0.090 0.910 25 H 0.112 0.888 26 H 0.017 0.983 27 H 0.066 0.934 28 H 0.008 0.992 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.494 -9.640 1.809 12.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.569 4.569 8 H 0.090 0.910 9 C 0.122 3.878 10 H -0.013 1.013 11 C -0.178 4.178 12 S -0.132 6.132 13 C -0.202 4.202 14 C -0.075 4.075 15 N -0.275 5.275 16 C -0.017 4.017 17 C -0.181 4.181 18 C -0.214 4.214 19 C -0.205 4.205 20 H 0.074 0.926 21 H 0.120 0.880 22 H 0.074 0.926 23 H 0.143 0.857 24 H 0.109 0.891 25 H 0.130 0.870 26 H 0.035 0.965 27 H 0.084 0.916 28 H 0.027 0.973 29 H 0.134 0.866 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.375 -9.737 1.213 11.702 hybrid contribution 0.727 1.543 0.858 1.909 sum 7.102 -8.194 2.071 11.040 Atomic orbital electron populations 1.69963 1.07362 1.27815 1.50425 1.25782 0.95654 1.02722 0.94254 0.85527 0.78274 0.78396 0.79006 1.19352 1.21035 1.19500 1.21547 0.93726 0.90362 1.51276 0.91037 1.19038 0.89087 0.88905 0.90780 1.01278 1.23595 0.99664 0.93365 1.01203 1.86494 1.22311 1.08520 1.95905 1.23482 0.96685 0.98348 1.01650 1.22284 0.97547 0.92878 0.94764 1.61267 1.11640 1.02309 1.52318 1.21391 0.91448 0.96061 0.92792 1.22352 1.00723 0.99185 0.95830 1.23116 1.02003 1.00619 0.95693 1.23012 0.91971 1.02349 1.03188 0.92566 0.87980 0.92559 0.85680 0.89093 0.87007 0.96485 0.91578 0.97330 0.86557 0.90068 0.86865 0.86772 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.35 11.28 21.45 0.24 -52.11 16 2 C 0.02 0.86 5.30 84.66 0.45 1.31 16 3 Si 0.96 42.67 29.54 68.60 2.03 44.70 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.53 -28.40 7.94 25.60 0.20 -28.19 16 8 H 0.07 3.73 5.64 -2.91 -0.02 3.72 16 9 C 0.23 11.75 1.85 44.34 0.08 11.83 16 10 H -0.03 -1.78 7.91 -2.39 -0.02 -1.79 16 11 C -0.03 -1.48 5.75 72.07 0.41 -1.07 16 12 S -0.36 -15.35 22.40 -56.49 -1.27 -16.62 16 13 C -0.05 -1.76 6.69 72.06 0.48 -1.28 16 14 C 0.05 1.90 5.15 86.47 0.45 2.35 16 15 N -0.55 -22.97 4.47 -876.64 -3.92 -26.89 16 16 C 0.11 4.20 4.67 86.30 0.40 4.60 16 17 C -0.16 -4.51 4.06 -10.80 -0.04 -4.55 16 18 C -0.18 -4.10 10.12 30.59 0.31 -3.79 16 19 C -0.17 -3.82 10.25 30.59 0.31 -3.50 16 20 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 21 H 0.10 5.74 6.00 -2.39 -0.01 5.73 16 22 H 0.06 2.81 8.14 -2.39 -0.02 2.80 16 23 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 24 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 25 H 0.11 3.15 5.49 -2.39 -0.01 3.13 16 26 H 0.02 0.66 7.91 -2.39 -0.02 0.64 16 27 H 0.07 2.71 6.17 -2.39 -0.01 2.70 16 28 H 0.01 0.35 7.81 -2.39 -0.02 0.34 16 29 H 0.12 3.04 7.34 -2.39 -0.02 3.02 16 30 H 0.08 2.06 8.03 -2.39 -0.02 2.04 16 31 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -59.67 270.26 1.23 -58.44 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 1.08 Total: 14.77 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 3.06 Total: -22.30 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -3.68 Total: -79.00 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: -15.35 SS G_CDS: -1.27 Total: -16.62 kcal Total: -59.67 1.23 -58.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259919538.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.411 kcal (2) G-P(sol) polarization free energy of solvation -59.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds