Wall clock time and date at job start Mon Mar 30 2020 02:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39642 * 120.15393 * 310.98486 * 3 2 1 5 5 C 1.37924 * 119.85163 * 180.02562 * 4 3 2 6 6 C 1.38385 * 120.14965 * 359.97438 * 5 4 3 7 7 C 1.38340 * 120.30600 * 0.02562 * 6 5 4 8 8 C 1.37972 * 120.14948 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.07925 * 180.02562 * 8 7 6 10 10 H 1.08995 * 109.47769 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47032 * 299.95759 * 9 8 7 12 12 H 1.08005 * 120.00084 * 359.97438 * 11 9 8 13 13 C 1.37874 * 120.00179 * 179.97438 * 11 9 8 14 14 N 1.31521 * 119.99785 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00142 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47164 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47162 * 120.00306 * 15 13 11 18 18 H 1.48506 * 109.46967 * 240.00083 * 15 13 11 19 19 C 1.52997 * 109.46982 * 59.95176 * 9 8 7 20 20 C 1.53005 * 117.49619 * 128.62352 * 19 9 8 21 21 C 1.52999 * 117.49622 * 60.00322 * 19 9 8 22 22 H 1.08010 * 120.07689 * 0.02562 * 4 3 2 23 23 H 1.07999 * 119.93002 * 180.02562 * 5 4 3 24 24 H 1.07996 * 119.84865 * 179.74732 * 6 5 4 25 25 H 1.08004 * 119.92802 * 179.97438 * 7 6 5 26 26 H 0.96994 * 119.99481 * 179.97438 * 14 13 11 27 27 H 1.08999 * 115.55532 * 274.33532 * 19 9 8 28 28 H 1.09004 * 117.49764 * 0.02562 * 20 19 9 29 29 H 1.09001 * 117.50012 * 145.02198 * 20 19 9 30 30 H 1.09004 * 117.50089 * 214.97429 * 21 19 9 31 31 H 1.09002 * 117.49926 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -0.7910 0.9115 5 6 4.6490 -0.7852 0.9063 6 6 5.3374 0.0024 0.0003 7 6 4.6486 0.7890 -0.9055 8 6 3.2689 0.7936 -0.9107 9 6 2.5201 1.6507 -1.8985 10 1 1.4477 1.5225 -1.7513 11 6 2.8863 3.0972 -1.6873 12 1 3.5905 3.3688 -0.9147 13 6 2.3224 4.0740 -2.4803 14 7 1.4645 3.7434 -3.4207 15 14 2.7758 5.8671 -2.2180 16 1 3.7538 5.9728 -1.1056 17 1 3.3794 6.4119 -3.4606 18 1 1.5549 6.6420 -1.8797 19 6 2.8934 1.2328 -3.3221 20 6 1.7497 0.9328 -4.2932 21 6 2.5990 -0.2108 -3.7347 22 1 2.7338 -1.4064 1.6190 23 1 5.1931 -1.3972 1.6105 24 1 6.4174 0.0063 0.0032 25 1 5.1920 1.4016 -1.6097 26 1 1.0675 4.4306 -3.9783 27 1 3.7904 1.6995 -3.7292 28 1 0.7313 1.0336 -3.9179 29 1 1.8940 1.2024 -5.3394 30 1 3.3020 -0.6936 -4.4136 31 1 2.1397 -0.8629 -2.9918 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259982470.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:35 Heat of formation + Delta-G solvation = 68.822636 kcal Electronic energy + Delta-G solvation = -15046.789059 eV Core-core repulsion = 12679.680051 eV Total energy + Delta-G solvation = -2367.109008 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.22390 -36.38696 -35.77168 -32.82836 -31.33125 -30.75764 -27.36038 -23.71451 -23.12371 -21.56940 -21.16132 -19.10739 -18.05424 -16.54814 -15.50622 -14.86254 -14.58003 -14.22365 -13.80401 -13.49220 -12.89757 -12.80000 -12.52868 -12.17551 -12.06227 -11.70896 -11.08767 -11.01250 -10.93370 -10.63593 -10.50372 -10.18635 -9.88253 -9.75672 -8.85611 -8.81601 -8.45473 -8.37661 -8.02852 -6.05625 -4.14335 1.33687 1.90327 3.26040 3.30848 3.35234 3.38159 3.54301 4.35174 4.47879 4.54066 5.01423 5.22999 5.28212 5.35934 5.55986 5.80886 5.93359 6.01754 6.12883 6.27452 6.31611 6.48199 6.56829 6.74296 6.84159 6.91279 6.98991 7.11421 7.19901 7.37963 7.44244 7.67885 7.87647 8.12799 8.22346 8.87897 9.50623 11.00119 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.022255 B = 0.010233 C = 0.009344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.864114 B = 2735.465385 C = 2995.974807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.271 3.729 3 C -0.052 4.052 4 C -0.077 4.077 5 C -0.150 4.150 6 C -0.096 4.096 7 C -0.110 4.110 8 C 0.024 3.976 9 C 0.095 3.905 10 H 0.040 0.960 11 C -0.519 4.519 12 H 0.062 0.938 13 C 0.069 3.931 14 N -0.870 5.870 15 Si 0.890 3.110 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.285 1.285 19 C -0.082 4.082 20 C -0.135 4.135 21 C -0.226 4.226 22 H 0.121 0.879 23 H 0.121 0.879 24 H 0.119 0.881 25 H 0.133 0.867 26 H 0.260 0.740 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.384 -7.110 3.827 10.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.044 4.044 3 C -0.055 4.055 4 C -0.097 4.097 5 C -0.168 4.168 6 C -0.115 4.115 7 C -0.128 4.128 8 C 0.021 3.979 9 C 0.077 3.923 10 H 0.058 0.942 11 C -0.557 4.557 12 H 0.080 0.920 13 C -0.135 4.135 14 N -0.507 5.507 15 Si 0.718 3.282 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.101 4.101 20 C -0.173 4.173 21 C -0.263 4.263 22 H 0.139 0.861 23 H 0.139 0.861 24 H 0.137 0.863 25 H 0.150 0.850 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.487 -7.033 3.681 9.650 hybrid contribution 0.586 1.104 -0.019 1.250 sum 6.073 -5.928 3.662 9.243 Atomic orbital electron populations 1.81127 1.12275 1.09157 1.08810 1.25636 0.92764 0.92940 0.93041 1.16101 0.84387 1.03414 1.01590 1.20977 0.94365 0.97417 0.96985 1.20819 0.93508 1.01731 1.00736 1.21335 0.99704 0.95601 0.94886 1.21037 0.93583 0.98957 0.99222 1.20693 0.94062 0.90479 0.92620 1.17702 0.94836 0.92936 0.86844 0.94238 1.20973 1.27100 0.89370 1.18267 0.91994 1.24961 0.94755 0.98793 0.94960 1.70041 1.28073 1.32968 1.19572 0.86562 0.78376 0.85183 0.78086 1.19639 1.21001 1.21077 1.22164 0.98839 0.92171 0.96914 1.22432 0.96938 0.99973 0.97916 1.23071 1.05568 0.93098 1.04556 0.86116 0.86134 0.86260 0.84957 0.93025 0.89476 0.89751 0.90941 0.90751 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.57 18.54 41.84 0.78 -8.79 16 2 C 0.27 5.50 13.54 -22.47 -0.30 5.19 16 3 C -0.05 -0.94 5.73 -106.93 -0.61 -1.56 16 4 C -0.08 -1.12 9.76 -39.17 -0.38 -1.50 16 5 C -0.15 -1.92 10.03 -39.64 -0.40 -2.32 16 6 C -0.10 -1.32 10.04 -39.49 -0.40 -1.72 16 7 C -0.11 -1.87 8.81 -39.64 -0.35 -2.22 16 8 C 0.02 0.48 4.42 -104.20 -0.46 0.02 16 9 C 0.10 2.24 1.96 -92.92 -0.18 2.06 16 10 H 0.04 1.06 6.22 -51.93 -0.32 0.73 16 11 C -0.52 -13.36 8.22 -34.44 -0.28 -13.64 16 12 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 13 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 14 N -0.87 -23.76 11.44 55.43 0.63 -23.13 16 15 Si 0.89 20.59 29.54 -169.99 -5.02 15.56 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C -0.08 -1.82 3.87 -90.62 -0.35 -2.17 16 20 C -0.14 -2.96 9.05 -26.73 -0.24 -3.21 16 21 C -0.23 -4.40 9.87 -26.73 -0.26 -4.66 16 22 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 23 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 24 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 25 H 0.13 2.24 8.05 -52.48 -0.42 1.82 16 26 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 27 H 0.09 1.97 8.11 -51.93 -0.42 1.55 16 28 H 0.08 2.02 8.05 -51.93 -0.42 1.60 16 29 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 276.37 15.07 4.16 4.16 Total: -1.00 -27.93 276.37 -7.42 -35.35 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -3.66 Total: 0.84 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -4.32 Total: -24.00 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 1.41 Total: -31.92 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.93 -7.42 -35.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259982470.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.171 kcal (2) G-P(sol) polarization free energy of solvation -27.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds