Wall clock time and date at job start Mon Mar 30 2020 03:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86803 * 120.00238 * 2 1 4 4 H 1.48502 * 109.47051 * 270.00073 * 3 2 1 5 5 H 1.48496 * 109.46740 * 29.99916 * 3 2 1 6 6 H 1.48504 * 109.47188 * 150.00104 * 3 2 1 7 7 C 1.37882 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99690 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00282 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.47062 * 125.40573 * 90.00198 * 10 9 7 12 12 C 1.54102 * 103.98842 * 180.02562 * 11 10 9 13 13 N 1.47047 * 103.86597 * 359.92478 * 12 11 10 14 14 C 1.34774 * 125.41407 * 179.97438 * 13 12 11 15 15 O 1.21241 * 119.99821 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00314 * 180.02562 * 14 13 12 17 17 N 1.46904 * 109.47491 * 180.02562 * 16 14 13 18 18 C 1.33956 * 109.18037 * 0.02562 * 13 12 11 19 19 O 1.21534 * 123.04308 * 179.97438 * 18 13 12 20 20 H 0.97002 * 120.00295 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46669 * 59.99586 * 9 7 2 22 22 H 1.08994 * 109.46641 * 300.00018 * 9 7 2 23 23 H 1.09002 * 110.54996 * 61.39999 * 11 10 9 24 24 H 1.08997 * 110.55013 * 298.73283 * 11 10 9 25 25 H 1.09001 * 110.55154 * 118.52658 * 12 11 10 26 26 H 1.09000 * 110.54868 * 241.18676 * 12 11 10 27 27 H 1.09002 * 109.47438 * 300.00806 * 16 14 13 28 28 H 1.08999 * 109.47406 * 60.00139 * 16 14 13 29 29 H 1.00901 * 110.99468 * 56.04438 * 17 16 14 30 30 H 1.00895 * 110.99852 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 4.2842 -3.3783 -1.1988 12 6 4.7615 -4.7313 -0.6362 13 7 4.6980 -4.5489 0.8215 14 6 5.0259 -5.4791 1.7400 15 8 5.4111 -6.5724 1.3847 16 6 4.9137 -5.1604 3.2086 17 7 5.3265 -6.3295 3.9964 18 6 4.2613 -3.3117 1.0917 19 8 4.1138 -2.8933 2.2231 20 1 -0.4851 0.8400 0.0004 21 1 3.8744 -0.6809 0.8905 22 1 3.8751 -0.6798 -0.8894 23 1 5.0705 -2.9131 -1.7933 24 1 3.3813 -3.5084 -1.7953 25 1 4.0940 -5.5335 -0.9509 26 1 5.7834 -4.9386 -0.9538 27 1 5.5595 -4.3153 3.4474 28 1 3.8809 -4.9071 3.4476 29 1 6.2587 -6.6234 3.7461 30 1 5.2605 -6.1407 4.9854 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260019204.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:46 Heat of formation + Delta-G solvation = -37.439045 kcal Electronic energy + Delta-G solvation = -15956.340864 eV Core-core repulsion = 13173.774740 eV Total energy + Delta-G solvation = -2782.566123 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.46905 -38.70711 -36.19914 -34.52270 -33.93713 -32.53162 -29.81620 -27.78563 -26.39237 -23.55544 -22.83281 -21.03859 -19.01690 -17.48692 -17.32440 -16.59497 -16.18180 -15.38716 -15.10682 -14.74991 -14.32045 -13.90561 -13.72601 -13.48375 -13.35601 -12.54491 -12.49497 -12.19877 -12.03035 -11.79380 -11.08620 -10.67652 -10.25615 -10.20510 -9.80887 -9.62826 -9.42832 -8.76564 -8.71972 -7.97727 -6.20523 -4.21862 2.15882 2.49209 3.18476 3.27784 3.28646 3.56951 3.86575 4.27789 4.48592 4.60830 4.71768 5.02884 5.08024 5.23950 5.44169 5.49664 5.71155 5.75122 5.92140 6.46567 6.66728 6.80916 7.03693 7.15538 7.35056 7.42032 7.63979 8.04752 8.32095 8.75006 8.84108 9.37310 10.92506 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.041083 B = 0.007226 C = 0.006706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.390406 B = 3873.985541 C = 4174.137377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.246 3.754 10 N -0.594 5.594 11 C 0.091 3.909 12 C 0.086 3.914 13 N -0.585 5.585 14 C 0.548 3.452 15 O -0.506 6.506 16 C 0.056 3.944 17 N -0.839 5.839 18 C 0.690 3.310 19 O -0.556 6.556 20 H 0.267 0.733 21 H 0.044 0.956 22 H 0.035 0.965 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.117 0.883 29 H 0.345 0.655 30 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.505 -6.501 -0.081 13.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.579 4.579 8 H 0.095 0.905 9 C 0.127 3.873 10 N -0.330 5.330 11 C -0.033 4.033 12 C -0.036 4.036 13 N -0.333 5.333 14 C 0.338 3.662 15 O -0.378 6.378 16 C -0.077 4.077 17 N -0.371 5.371 18 C 0.392 3.608 19 O -0.432 6.432 20 H 0.077 0.923 21 H 0.062 0.938 22 H 0.053 0.947 23 H 0.101 0.899 24 H 0.110 0.890 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.135 0.865 29 H 0.158 0.842 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.828 -7.038 0.077 12.915 hybrid contribution 0.902 1.564 0.098 1.808 sum 11.730 -5.474 0.174 12.946 Atomic orbital electron populations 1.69881 1.06234 1.27251 1.49561 1.24839 0.94796 0.98955 0.94215 0.86874 0.80563 0.83759 0.78704 1.19892 1.20729 1.18789 1.21331 0.88989 0.95129 1.52454 0.90503 1.19603 0.95678 0.74120 0.97900 1.47624 1.66179 1.15238 1.03973 1.22408 1.02022 0.88883 0.90028 1.22579 1.03437 0.98966 0.78651 1.46322 1.63383 1.14588 1.09021 1.20673 0.74799 0.82529 0.88168 1.90679 1.43634 1.21484 1.81987 1.21707 1.04894 0.92430 0.88644 1.58403 1.33339 1.36329 1.09039 1.16013 0.78538 0.80239 0.86002 1.90903 1.58227 1.73376 1.20681 0.92313 0.93768 0.94714 0.89927 0.89032 0.88923 0.89126 0.91046 0.86506 0.84225 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.96 55.43 0.77 -25.77 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 20.26 27.47 -169.99 -4.67 15.59 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 7 C -0.54 -14.80 9.94 -34.44 -0.34 -15.14 16 8 H 0.08 2.34 8.06 -52.48 -0.42 1.91 16 9 C 0.25 5.61 4.83 -5.20 -0.03 5.58 16 10 N -0.59 -11.75 2.95 -180.10 -0.53 -12.28 16 11 C 0.09 1.29 7.67 -3.16 -0.02 1.26 16 12 C 0.09 1.13 7.21 -3.17 -0.02 1.11 16 13 N -0.59 -9.85 3.00 -120.06 -0.36 -10.21 16 14 C 0.55 9.15 7.83 -10.99 -0.09 9.06 16 15 O -0.51 -9.05 16.51 5.59 0.09 -8.96 16 16 C 0.06 0.84 5.55 -4.98 -0.03 0.81 16 17 N -0.84 -10.50 9.25 -11.41 -0.11 -10.61 16 18 C 0.69 13.86 8.21 -88.12 -0.72 13.14 16 19 O -0.56 -12.62 14.51 5.34 0.08 -12.54 16 20 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 21 H 0.04 1.07 6.99 -51.93 -0.36 0.70 16 22 H 0.04 0.72 7.57 -51.93 -0.39 0.33 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.07 1.04 7.57 -51.93 -0.39 0.65 16 28 H 0.12 1.90 7.57 -51.93 -0.39 1.51 16 29 H 0.34 3.99 8.69 -39.29 -0.34 3.65 16 30 H 0.35 3.42 9.08 -39.29 -0.36 3.06 16 LS Contribution 261.51 15.07 3.94 3.94 Total: -1.00 -33.18 261.51 -5.65 -38.83 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -3.52 Total: 4.17 kcal Atomic # 6 Polarization: 19.17 SS G_CDS: -1.35 Total: 17.83 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.22 Total: -58.86 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: 0.17 Total: -21.51 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.67 Total: 15.59 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.18 -5.65 -38.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019204.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.390 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds