Wall clock time and date at job start Mon Mar 30 2020 03:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86803 * 120.00238 * 2 1 4 4 H 1.48502 * 109.47051 * 270.00073 * 3 2 1 5 5 H 1.48496 * 109.46740 * 29.99916 * 3 2 1 6 6 H 1.48504 * 109.47188 * 150.00104 * 3 2 1 7 7 C 1.37882 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99690 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00282 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.47062 * 125.40573 * 90.00198 * 10 9 7 12 12 C 1.54102 * 103.98842 * 180.02562 * 11 10 9 13 13 N 1.47047 * 103.86597 * 359.92478 * 12 11 10 14 14 C 1.34774 * 125.41407 * 179.97438 * 13 12 11 15 15 O 1.21241 * 119.99821 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00314 * 180.02562 * 14 13 12 17 17 N 1.46904 * 109.47491 * 180.02562 * 16 14 13 18 18 C 1.33956 * 109.18037 * 0.02562 * 13 12 11 19 19 O 1.21534 * 123.04308 * 179.97438 * 18 13 12 20 20 H 0.97002 * 120.00295 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46669 * 59.99586 * 9 7 2 22 22 H 1.08994 * 109.46641 * 300.00018 * 9 7 2 23 23 H 1.09002 * 110.54996 * 61.39999 * 11 10 9 24 24 H 1.08997 * 110.55013 * 298.73283 * 11 10 9 25 25 H 1.09001 * 110.55154 * 118.52658 * 12 11 10 26 26 H 1.09000 * 110.54868 * 241.18676 * 12 11 10 27 27 H 1.09002 * 109.47438 * 300.00806 * 16 14 13 28 28 H 1.08999 * 109.47406 * 60.00139 * 16 14 13 29 29 H 1.00901 * 110.99468 * 56.04438 * 17 16 14 30 30 H 1.00895 * 110.99852 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 4.2842 -3.3783 -1.1988 12 6 4.7615 -4.7313 -0.6362 13 7 4.6980 -4.5489 0.8215 14 6 5.0259 -5.4791 1.7400 15 8 5.4111 -6.5724 1.3847 16 6 4.9137 -5.1604 3.2086 17 7 5.3265 -6.3295 3.9964 18 6 4.2613 -3.3117 1.0917 19 8 4.1138 -2.8933 2.2231 20 1 -0.4851 0.8400 0.0004 21 1 3.8744 -0.6809 0.8905 22 1 3.8751 -0.6798 -0.8894 23 1 5.0705 -2.9131 -1.7933 24 1 3.3813 -3.5084 -1.7953 25 1 4.0940 -5.5335 -0.9509 26 1 5.7834 -4.9386 -0.9538 27 1 5.5595 -4.3153 3.4474 28 1 3.8809 -4.9071 3.4476 29 1 6.2587 -6.6234 3.7461 30 1 5.2605 -6.1407 4.9854 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260019204.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:46 Heat of formation + Delta-G solvation = -64.190683 kcal Electronic energy + Delta-G solvation = -15957.500902 eV Core-core repulsion = 13173.774740 eV Total energy + Delta-G solvation = -2783.726162 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.86289 -40.09651 -37.70901 -36.12539 -35.08897 -34.47597 -31.33868 -29.41585 -27.61735 -25.29842 -24.03409 -22.64945 -20.42423 -19.23583 -18.80209 -18.08422 -17.60915 -16.76778 -16.47769 -16.21164 -15.85982 -15.44389 -14.91610 -14.86506 -14.75100 -14.44774 -13.75248 -13.70830 -13.46430 -13.15924 -12.81086 -12.40929 -12.00703 -11.76745 -11.57332 -11.31365 -10.82329 -10.79728 -9.82220 -9.52366 -8.33284 -6.41146 0.76588 1.12710 1.37859 1.42903 1.52001 2.10152 2.33159 2.52074 3.00738 3.28484 3.48425 3.60056 3.95385 4.03022 4.24725 4.47723 4.50700 4.66158 4.76732 4.84908 4.90666 5.39370 5.47200 5.59597 5.94513 6.14257 6.24131 6.47353 6.61528 6.68677 7.15435 7.29202 8.83632 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.041083 B = 0.007226 C = 0.006706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.390406 B = 3873.985541 C = 4174.137377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.250 1.250 5 H -0.285 1.285 6 H -0.246 1.246 7 C -0.548 4.548 8 H 0.027 0.973 9 C 0.255 3.745 10 N -0.607 5.607 11 C 0.088 3.912 12 C 0.085 3.915 13 N -0.584 5.584 14 C 0.547 3.453 15 O -0.516 6.516 16 C 0.062 3.938 17 N -0.839 5.839 18 C 0.685 3.315 19 O -0.592 6.592 20 H 0.270 0.730 21 H 0.033 0.967 22 H 0.068 0.932 23 H 0.122 0.878 24 H 0.090 0.910 25 H 0.103 0.897 26 H 0.124 0.876 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.352 0.648 30 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.739 -6.106 -1.038 15.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.772 3.228 4 H -0.174 1.174 5 H -0.211 1.211 6 H -0.170 1.170 7 C -0.587 4.587 8 H 0.045 0.955 9 C 0.134 3.866 10 N -0.342 5.342 11 C -0.034 4.034 12 C -0.036 4.036 13 N -0.331 5.331 14 C 0.338 3.662 15 O -0.389 6.389 16 C -0.071 4.071 17 N -0.374 5.374 18 C 0.387 3.613 19 O -0.470 6.470 20 H 0.079 0.921 21 H 0.051 0.949 22 H 0.086 0.914 23 H 0.140 0.860 24 H 0.108 0.892 25 H 0.121 0.879 26 H 0.142 0.858 27 H 0.092 0.908 28 H 0.117 0.883 29 H 0.166 0.834 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 13.094 -6.696 -0.913 14.735 hybrid contribution 0.149 1.312 0.398 1.379 sum 13.243 -5.385 -0.514 14.305 Atomic orbital electron populations 1.70051 1.08473 1.28552 1.51335 1.25874 0.95644 1.03501 0.93532 0.85681 0.79355 0.77746 0.79993 1.17434 1.21127 1.16986 1.21573 0.91622 0.93352 1.52111 0.95458 1.19323 0.92407 0.76250 0.98631 1.47592 1.65802 1.14833 1.05928 1.22754 1.03359 0.88845 0.88431 1.22896 1.05712 0.98666 0.76302 1.46294 1.62709 1.13339 1.10776 1.20934 0.74315 0.82227 0.88723 1.90670 1.44210 1.21696 1.82288 1.21556 1.03980 0.93375 0.88175 1.58373 1.33891 1.35185 1.09967 1.16221 0.78381 0.81107 0.85622 1.90865 1.59643 1.74394 1.22133 0.92150 0.94924 0.91438 0.86012 0.89171 0.87913 0.85833 0.90806 0.88255 0.83383 0.81933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.68 13.96 21.45 0.30 -57.38 16 2 C 0.01 0.73 5.47 84.66 0.46 1.19 16 3 Si 0.95 41.07 27.47 68.60 1.88 42.95 16 4 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 5 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.25 -9.90 6.54 99.48 0.65 -9.25 16 7 C -0.55 -30.49 9.94 25.60 0.25 -30.24 16 8 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 9 C 0.25 11.27 4.83 85.64 0.41 11.69 16 10 N -0.61 -23.20 2.95 -842.30 -2.48 -25.68 16 11 C 0.09 2.27 7.67 86.64 0.66 2.94 16 12 C 0.09 2.00 7.21 86.65 0.62 2.63 16 13 N -0.58 -18.87 3.00 -770.91 -2.31 -21.19 16 14 C 0.55 17.66 7.83 87.66 0.69 18.35 16 15 O -0.52 -17.58 16.51 -2.91 -0.05 -17.63 16 16 C 0.06 1.84 5.55 85.55 0.47 2.31 16 17 N -0.84 -20.08 9.25 -190.00 -1.76 -21.84 16 18 C 0.68 27.17 8.21 179.47 1.47 28.64 16 19 O -0.59 -27.17 14.51 -3.82 -0.06 -27.23 16 20 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 21 H 0.03 1.53 6.99 -2.39 -0.02 1.51 16 22 H 0.07 2.58 7.57 -2.39 -0.02 2.56 16 23 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.07 2.13 7.57 -2.39 -0.02 2.11 16 28 H 0.10 3.30 7.57 -2.39 -0.02 3.29 16 29 H 0.35 7.62 8.69 -89.69 -0.78 6.84 16 30 H 0.36 6.71 9.08 -89.70 -0.81 5.89 16 Total: -1.00 -73.43 261.51 0.11 -73.33 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -0.47 Total: 17.15 kcal Atomic # 6 Polarization: 32.45 SS G_CDS: 5.05 Total: 37.51 kcal Atomic # 7 Polarization: -119.83 SS G_CDS: -6.26 Total: -126.08 kcal Atomic # 8 Polarization: -44.75 SS G_CDS: -0.10 Total: -44.85 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.88 Total: 42.95 kcal Total: -73.43 0.11 -73.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019204.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.137 kcal (2) G-P(sol) polarization free energy of solvation -73.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds