Wall clock time and date at job start Mon Mar 30 2020 03:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47781 * 2 1 4 4 C 1.50699 * 109.46905 * 120.00119 * 2 1 3 5 5 H 1.08001 * 120.00580 * 119.99796 * 4 2 1 6 6 C 1.37879 * 119.99945 * 299.99554 * 4 2 1 7 7 N 1.31516 * 119.99828 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00129 * 0.02562 * 6 4 2 9 9 H 1.48492 * 109.47268 * 89.99872 * 8 6 4 10 10 H 1.48500 * 109.47195 * 209.99978 * 8 6 4 11 11 H 1.48507 * 109.46825 * 329.99781 * 8 6 4 12 12 C 1.50701 * 109.47072 * 239.99654 * 2 1 3 13 13 C 1.39365 * 119.46580 * 300.00569 * 12 2 1 14 14 C 1.36129 * 120.86589 * 179.72078 * 13 12 2 15 15 C 1.40430 * 119.61868 * 359.97438 * 14 13 12 16 16 C 1.40765 * 121.37845 * 180.02562 * 15 14 13 17 17 C 1.36575 * 118.15380 * 179.97438 * 16 15 14 18 18 C 1.39335 * 119.93300 * 0.02562 * 17 16 15 19 19 N 1.31084 * 121.74614 * 0.02562 * 18 17 16 20 20 C 1.33679 * 121.32413 * 359.95705 * 19 18 17 21 21 C 1.36068 * 119.46446 * 119.72777 * 12 2 1 22 22 H 1.08999 * 109.47327 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46489 * 300.00365 * 1 2 3 24 24 H 1.08999 * 109.46956 * 59.99955 * 1 2 3 25 25 H 0.96999 * 119.99818 * 179.97438 * 7 6 4 26 26 H 1.07997 * 119.56516 * 359.74103 * 13 12 2 27 27 H 1.08002 * 120.19474 * 179.97438 * 14 13 12 28 28 H 1.08002 * 120.92401 * 359.95521 * 16 15 14 29 29 H 1.08001 * 120.03238 * 180.02562 * 17 16 15 30 30 H 1.07998 * 119.12285 * 179.97438 * 18 17 16 31 31 H 1.08000 * 120.12723 * 0.25582 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8027 0.8728 2.6998 10 1 0.9760 1.9952 3.9068 11 1 0.8473 2.1765 1.4920 12 6 2.0324 -0.7105 -1.2304 13 6 1.6888 -2.0448 -1.4399 14 6 2.1221 -2.7125 -2.5442 15 6 2.9254 -2.0489 -3.4857 16 6 3.3934 -2.7033 -4.6408 17 6 4.1699 -1.9948 -5.5129 18 6 4.4776 -0.6625 -5.2453 19 7 4.0409 -0.0566 -4.1681 20 6 3.2766 -0.6926 -3.2746 21 6 2.8093 -0.0372 -2.1218 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.9040 -0.5274 4.4375 26 1 1.0704 -2.5556 -0.7167 27 1 1.8496 -3.7465 -2.6955 28 1 3.1456 -3.7370 -4.8320 29 1 4.5449 -2.4669 -6.4089 30 1 5.0930 -0.1148 -5.9436 31 1 3.0660 0.9968 -1.9445 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260037155.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:13 Heat of formation + Delta-G solvation = 28.844659 kcal Electronic energy + Delta-G solvation = -14733.206916 eV Core-core repulsion = 12364.364333 eV Total energy + Delta-G solvation = -2368.842583 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.66751 -38.77643 -35.86192 -34.34902 -33.41028 -30.97813 -30.35304 -27.11475 -25.21135 -24.75872 -22.98445 -22.04729 -18.99741 -18.35646 -17.84787 -17.54885 -16.67563 -15.47563 -15.32696 -15.27352 -15.15945 -14.71469 -14.19146 -14.00514 -13.80743 -13.40468 -13.21593 -12.78862 -12.55723 -12.25738 -12.01506 -11.83105 -11.42246 -11.28547 -11.10867 -10.74752 -10.35415 -9.48557 -9.08369 -8.30909 -6.35385 -0.41172 -0.01683 1.15122 1.30232 1.36831 1.46835 2.11884 2.31594 3.04107 3.25053 3.43950 3.73827 3.93604 4.02692 4.13615 4.28486 4.31989 4.47782 4.63710 4.69343 4.71912 4.84226 4.96982 5.07720 5.12663 5.22560 5.24646 5.40922 5.53285 5.60868 5.70696 5.90522 6.02475 6.28930 6.69901 7.06466 7.29183 8.85439 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.048437 B = 0.006728 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.927375 B = 4160.579521 C = 4317.476239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.035 3.965 3 H 0.029 0.971 4 C -0.509 4.509 5 H 0.036 0.964 6 C 0.015 3.985 7 N -0.947 5.947 8 Si 0.949 3.051 9 H -0.261 1.261 10 H -0.299 1.299 11 H -0.251 1.251 12 C -0.026 4.026 13 C -0.113 4.113 14 C -0.095 4.095 15 C -0.130 4.130 16 C -0.054 4.054 17 C -0.179 4.179 18 C 0.121 3.879 19 N -0.517 5.517 20 C 0.108 3.892 21 C -0.135 4.135 22 H 0.060 0.940 23 H 0.035 0.965 24 H 0.058 0.942 25 H 0.267 0.733 26 H 0.125 0.875 27 H 0.162 0.838 28 H 0.172 0.828 29 H 0.178 0.822 30 H 0.188 0.812 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.176 -2.995 -18.531 18.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.016 3.984 3 H 0.047 0.953 4 C -0.547 4.547 5 H 0.054 0.946 6 C -0.182 4.182 7 N -0.587 5.587 8 Si 0.776 3.224 9 H -0.187 1.187 10 H -0.227 1.227 11 H -0.175 1.175 12 C -0.028 4.028 13 C -0.131 4.131 14 C -0.113 4.113 15 C -0.132 4.132 16 C -0.080 4.080 17 C -0.198 4.198 18 C -0.051 4.051 19 N -0.226 5.226 20 C -0.012 4.012 21 C -0.154 4.154 22 H 0.079 0.921 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.143 0.857 27 H 0.179 0.821 28 H 0.189 0.811 29 H 0.195 0.805 30 H 0.204 0.796 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.019 -2.106 -18.089 18.211 hybrid contribution -0.431 -0.096 0.893 0.996 sum -0.450 -2.202 -17.195 17.342 Atomic orbital electron populations 1.22065 0.96215 1.01769 0.99684 1.18329 0.93748 0.95462 0.90861 0.95264 1.21111 1.31158 1.12484 0.89985 0.94583 1.25823 0.97236 0.99846 0.95297 1.70032 1.47548 1.42479 0.98611 0.85850 0.79376 0.80041 0.77181 1.18720 1.22704 1.17493 1.19848 0.94138 0.94664 0.94107 1.20968 1.00377 0.93964 0.97750 1.21280 0.96437 1.00737 0.92835 1.19105 1.01343 0.94494 0.98260 1.21872 0.93909 1.01284 0.90927 1.22251 0.99997 0.95357 1.02186 1.23623 0.95059 0.93523 0.92903 1.67996 1.11275 1.39234 1.04081 1.18960 0.96129 0.91605 0.94485 1.20666 1.00440 1.00385 0.93905 0.92066 0.94604 0.92261 0.92437 0.85725 0.82073 0.81104 0.80501 0.79558 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.84 8.48 71.98 0.61 -5.23 16 2 C 0.03 1.65 2.05 -12.28 -0.03 1.63 16 3 H 0.03 1.42 6.87 -2.39 -0.02 1.41 16 4 C -0.51 -29.09 8.80 25.60 0.23 -28.87 16 5 H 0.04 2.29 7.84 -2.91 -0.02 2.26 16 6 C 0.02 0.89 5.45 84.65 0.46 1.35 16 7 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 8 Si 0.95 45.03 24.37 68.60 1.67 46.71 16 9 H -0.26 -11.63 6.87 99.48 0.68 -10.95 16 10 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 11 H -0.25 -11.20 6.53 99.48 0.65 -10.55 16 12 C -0.03 -1.10 4.70 -20.10 -0.09 -1.20 16 13 C -0.11 -4.27 8.58 22.05 0.19 -4.08 16 14 C -0.09 -2.89 9.77 22.31 0.22 -2.67 16 15 C -0.13 -4.02 5.74 -21.28 -0.12 -4.14 16 16 C -0.05 -1.16 9.90 22.50 0.22 -0.93 16 17 C -0.18 -3.23 10.03 22.14 0.22 -3.01 16 18 C 0.12 2.81 11.15 85.07 0.95 3.76 16 19 N -0.52 -17.30 10.34 -188.63 -1.95 -19.25 16 20 C 0.11 3.98 6.60 40.29 0.27 4.25 16 21 C -0.14 -5.57 9.58 22.34 0.21 -5.35 16 22 H 0.06 2.43 7.34 -2.39 -0.02 2.42 16 23 H 0.04 1.52 3.27 -2.38 -0.01 1.52 16 24 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 26 H 0.12 4.76 7.52 -2.91 -0.02 4.74 16 27 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 28 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 30 H 0.19 2.80 8.06 -2.91 -0.02 2.77 16 31 H 0.12 4.89 7.89 -2.91 -0.02 4.86 16 Total: -1.00 -71.07 259.43 4.40 -66.67 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.05 Total: 9.25 kcal Atomic # 6 Polarization: -47.84 SS G_CDS: 3.34 Total: -44.50 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -1.65 Total: -78.12 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.67 Total: 46.71 kcal Total: -71.07 4.40 -66.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260037155.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.511 kcal (2) G-P(sol) polarization free energy of solvation -71.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds