Wall clock time and date at job start Mon Mar 30 2020 03:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36197 * 120.66776 * 2 1 4 4 N 1.32586 * 121.87351 * 180.02562 * 3 2 1 5 5 C 1.31259 * 122.77692 * 359.97438 * 4 3 2 6 6 C 1.40401 * 119.88449 * 359.97438 * 5 4 3 7 7 C 1.40382 * 122.08631 * 179.97438 * 6 5 4 8 8 C 1.36166 * 119.51177 * 180.30694 * 7 6 5 9 9 C 1.50705 * 119.45299 * 179.70084 * 8 7 6 10 10 C 1.50699 * 109.47129 * 89.99723 * 9 8 7 11 11 H 1.08004 * 120.00101 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99987 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99794 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99979 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47316 * 90.00038 * 14 12 10 16 16 H 1.48499 * 109.47417 * 209.99830 * 14 12 10 17 17 H 1.48498 * 109.47315 * 329.99996 * 14 12 10 18 18 C 1.39373 * 121.09235 * 359.40003 * 8 7 6 19 19 C 1.36214 * 121.02609 * 0.62924 * 18 8 7 20 20 C 1.40233 * 119.47525 * 359.68274 * 19 18 8 21 21 H 1.09003 * 109.46977 * 89.99257 * 1 2 3 22 22 H 1.08997 * 109.47170 * 209.99813 * 1 2 3 23 23 H 1.08997 * 109.46787 * 330.00061 * 1 2 3 24 24 H 1.07999 * 119.06897 * 0.02562 * 3 2 1 25 25 H 1.08006 * 120.05877 * 180.02562 * 5 4 3 26 26 H 1.08002 * 120.24037 * 0.02692 * 7 6 5 27 27 H 1.08997 * 109.47130 * 209.99874 * 9 8 7 28 28 H 1.09002 * 109.46830 * 329.99970 * 9 8 7 29 29 H 0.97006 * 119.99633 * 180.02562 * 13 12 10 30 30 H 1.08005 * 119.48854 * 180.29558 * 18 8 7 31 31 H 1.07995 * 120.26521 * 179.66733 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2017 1.1715 0.0000 4 7 3.5273 1.1994 -0.0005 5 6 4.2610 0.1110 -0.0005 6 6 3.6426 -1.1495 0.0005 7 6 4.3819 -2.3429 0.0000 8 6 3.7279 -3.5371 -0.0053 9 6 4.5229 -4.8174 -0.0127 10 6 4.7896 -5.2513 1.4056 11 1 4.4207 -4.6590 2.2300 12 6 5.5055 -6.4038 1.6509 13 7 5.9560 -7.1243 0.6470 14 14 5.8368 -6.9413 3.4089 15 1 4.7354 -7.8227 3.8730 16 1 7.1219 -7.6832 3.4660 17 1 5.9163 -5.7453 4.2855 18 6 2.3354 -3.5952 0.0023 19 6 1.5853 -2.4582 0.0025 20 6 2.2243 -1.2099 0.0016 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6575 2.1043 0.0004 25 1 5.3385 0.1849 -0.0005 26 1 5.4615 -2.3138 -0.0008 27 1 3.9579 -5.5929 -0.5298 28 1 5.4700 -4.6539 -0.5268 29 1 6.4594 -7.9353 0.8196 30 1 1.8433 -4.5567 0.0027 31 1 0.5069 -2.5175 0.0030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260088594.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:33 Heat of formation + Delta-G solvation = 31.134215 kcal Electronic energy + Delta-G solvation = -14499.513539 eV Core-core repulsion = 12130.770239 eV Total energy + Delta-G solvation = -2368.743301 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.50803 -37.23881 -34.14888 -33.17868 -31.14317 -30.39652 -27.19718 -27.10358 -23.77708 -23.43613 -21.24735 -20.85614 -17.46435 -16.63259 -16.32863 -15.91369 -14.59526 -14.33406 -14.30471 -13.76349 -13.35466 -13.20172 -12.83529 -12.49240 -12.39339 -11.94217 -11.50607 -11.39343 -11.21157 -10.91904 -10.66807 -10.50845 -9.79358 -9.63258 -9.34478 -9.13242 -8.50128 -8.37477 -7.46425 -6.12090 -4.16863 0.74500 1.37458 2.35628 3.25794 3.32465 3.36115 3.52239 4.35373 4.52213 4.65511 4.85081 4.99936 5.11012 5.22532 5.27464 5.42020 5.55350 5.59693 5.73006 5.84971 5.90270 5.99540 6.18724 6.31503 6.50074 6.62287 6.91736 6.98662 7.00276 7.35139 7.48978 7.68455 7.83080 8.20953 8.25360 8.88238 9.47772 10.97552 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.040608 B = 0.006134 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.361140 B = 4563.625505 C = 4758.117445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.120 4.120 3 C 0.052 3.948 4 N -0.495 5.495 5 C 0.133 3.867 6 C -0.099 4.099 7 C -0.107 4.107 8 C -0.032 4.032 9 C 0.045 3.955 10 C -0.515 4.515 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.893 5.893 14 Si 0.896 3.104 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.080 4.080 19 C -0.130 4.130 20 C -0.040 4.040 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.143 0.857 25 H 0.159 0.841 26 H 0.130 0.870 27 H 0.031 0.969 28 H 0.032 0.968 29 H 0.263 0.737 30 H 0.125 0.875 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.251 10.873 -1.917 13.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.121 4.121 3 C -0.091 4.091 4 N -0.203 5.203 5 C -0.038 4.038 6 C -0.101 4.101 7 C -0.127 4.127 8 C -0.032 4.032 9 C 0.009 3.991 10 C -0.554 4.554 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.531 5.531 14 Si 0.723 3.277 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.099 4.099 19 C -0.148 4.148 20 C -0.045 4.045 21 H 0.089 0.911 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.160 0.840 25 H 0.176 0.824 26 H 0.148 0.852 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.143 0.857 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.870 11.611 -1.959 14.163 hybrid contribution -0.171 -1.272 0.992 1.622 sum -8.041 10.339 -0.967 13.133 Atomic orbital electron populations 1.20690 0.90696 1.02846 1.02288 1.20559 0.96825 0.93406 1.01355 1.21835 0.89856 0.96983 1.00472 1.67330 1.07461 1.32577 1.12883 1.23091 0.99745 0.86740 0.94247 1.19064 0.93363 0.95560 1.02067 1.20867 0.99920 0.90522 1.01410 1.20522 0.93741 0.97508 0.91446 1.18436 0.94637 0.88094 0.97969 1.21032 1.34819 1.08206 0.91297 0.92433 1.25003 0.95496 0.96375 0.97313 1.69953 1.36836 1.15688 1.30637 0.86525 0.77746 0.78798 0.84600 1.20537 1.21065 1.19764 1.21098 0.94116 0.98300 0.96414 1.20877 0.99452 0.91437 1.02999 1.17955 0.92597 0.93540 1.00384 0.91110 0.91218 0.91451 0.83980 0.82426 0.85198 0.95097 0.94980 0.92721 0.85693 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.61 36.01 0.35 -0.78 16 2 C -0.12 -1.72 5.90 -104.44 -0.62 -2.33 16 3 C 0.05 0.75 10.74 -17.96 -0.19 0.56 16 4 N -0.50 -8.02 10.30 -13.16 -0.14 -8.15 16 5 C 0.13 2.13 11.05 -16.98 -0.19 1.94 16 6 C -0.10 -1.74 5.74 -106.85 -0.61 -2.35 16 7 C -0.11 -2.04 9.41 -39.52 -0.37 -2.41 16 8 C -0.03 -0.67 5.04 -104.94 -0.53 -1.19 16 9 C 0.05 1.12 5.07 -29.03 -0.15 0.97 16 10 C -0.52 -13.97 9.09 -34.44 -0.31 -14.29 16 11 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 14 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 C -0.08 -1.47 9.59 -39.89 -0.38 -1.85 16 19 C -0.13 -2.09 9.33 -39.56 -0.37 -2.46 16 20 C -0.04 -0.67 5.75 -106.81 -0.61 -1.28 16 21 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.07 0.70 6.56 -51.93 -0.34 0.36 16 23 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 24 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 25 H 0.16 2.10 8.06 -52.48 -0.42 1.68 16 26 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 27 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 28 H 0.03 0.82 8.07 -51.93 -0.42 0.41 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 31 H 0.12 1.61 6.53 -52.49 -0.34 1.27 16 LS Contribution 269.97 15.07 4.07 4.07 Total: -1.00 -29.83 269.97 -8.04 -37.86 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -3.60 Total: -0.96 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -4.09 Total: -23.93 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.60 Total: -33.12 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.83 -8.04 -37.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088594.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.998 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds