Wall clock time and date at job start Mon Mar 30 2020 02:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39632 * 120.14605 * 139.93243 * 3 2 1 5 5 C 1.37947 * 119.84347 * 180.02562 * 4 3 2 6 6 C 1.38366 * 120.15306 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.85064 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.47012 * 359.97438 * 7 6 5 9 9 C 1.50693 * 109.47460 * 119.99597 * 7 6 5 10 10 H 1.07998 * 120.00289 * 0.02562 * 9 7 6 11 11 C 1.37885 * 120.00042 * 180.02562 * 9 7 6 12 12 N 1.31514 * 120.00003 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99826 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47278 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.46946 * 120.00343 * 13 11 9 16 16 H 1.48507 * 109.47025 * 240.00070 * 13 11 9 17 17 C 1.53003 * 109.47087 * 239.99940 * 7 6 5 18 18 C 1.53000 * 117.49792 * 59.99477 * 17 7 6 19 19 C 1.53002 * 60.02940 * 107.48056 * 18 17 7 20 20 C 1.38362 * 120.30113 * 0.23092 * 6 5 4 21 21 C 1.37948 * 120.15397 * 359.49485 * 20 6 5 22 22 H 1.07999 * 120.07982 * 359.97438 * 4 3 2 23 23 H 1.07998 * 119.92344 * 179.97438 * 5 4 3 24 24 H 0.96994 * 120.00352 * 179.97438 * 12 11 9 25 25 H 1.08999 * 115.55832 * 274.31094 * 17 7 6 26 26 H 1.09002 * 117.49833 * 214.98161 * 18 17 7 27 27 H 1.09002 * 117.49953 * 359.97438 * 18 17 7 28 28 H 1.09000 * 117.49996 * 107.50493 * 19 18 17 29 29 H 1.08999 * 117.49664 * 252.51862 * 19 18 17 30 30 H 1.08001 * 119.92084 * 179.72463 * 20 6 5 31 31 H 1.08003 * 120.07578 * 180.25383 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 0.9250 -0.7772 5 6 4.6483 0.9197 -0.7730 6 6 5.3374 0.0009 -0.0013 7 6 6.8444 0.0008 -0.0022 8 1 7.2074 0.7873 -0.6639 9 6 7.3476 0.2486 1.3965 10 1 6.6464 0.3915 2.2053 11 6 8.7034 0.2930 1.6436 12 7 9.5574 0.1196 0.6586 13 14 9.3271 0.5995 3.3775 14 1 8.1727 0.7606 4.2976 15 1 10.1530 -0.5535 3.8174 16 1 10.1516 1.8345 3.3959 17 6 7.3540 -1.3551 -0.4948 18 6 6.9488 -1.7926 -1.9038 19 6 8.3875 -1.3538 -1.6239 20 6 4.6492 -0.9212 0.7671 21 6 3.2697 -0.9235 0.7766 22 1 2.7322 1.6419 -1.3810 23 1 5.1917 1.6338 -1.3739 24 1 10.5111 0.1512 0.8323 25 1 7.4415 -2.1297 0.2670 26 1 6.7697 -2.8550 -2.0689 27 1 6.3187 -1.1146 -2.4797 28 1 9.1550 -2.1275 -1.6050 29 1 8.7040 -0.3870 -2.0154 30 1 5.1933 -1.6385 1.3637 31 1 2.7338 -1.6413 1.3800 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260174989.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:37 Heat of formation + Delta-G solvation = 66.375124 kcal Electronic energy + Delta-G solvation = -14654.682927 eV Core-core repulsion = 12287.467787 eV Total energy + Delta-G solvation = -2367.215140 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.16725 -36.82164 -35.83742 -32.85165 -31.43984 -30.61223 -27.64722 -24.00755 -22.31247 -21.91894 -21.19485 -19.17502 -18.47886 -16.55436 -15.28675 -14.86028 -14.54787 -14.17589 -13.87928 -13.73391 -13.19379 -12.95589 -12.67344 -12.53672 -12.09674 -11.76272 -11.29293 -11.02854 -10.72536 -10.71947 -10.53647 -10.17911 -9.89755 -9.79016 -8.87184 -8.83686 -8.55608 -8.40541 -8.02075 -6.09285 -4.17284 1.27025 1.83112 2.87596 3.23862 3.31126 3.33699 3.37926 4.21248 4.29939 4.41503 5.00226 5.19818 5.24167 5.30255 5.71323 5.86651 5.93316 5.97232 6.10452 6.24380 6.36010 6.43193 6.46722 6.71514 6.78733 6.95743 6.97985 7.12246 7.16930 7.36933 7.44149 7.68618 7.71049 7.86237 8.21380 8.85418 9.48009 10.96316 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.028556 B = 0.007762 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.298756 B = 3606.592101 C = 4227.490663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.271 3.729 3 C -0.072 4.072 4 C -0.070 4.070 5 C -0.135 4.135 6 C 0.010 3.990 7 C 0.098 3.902 8 H 0.040 0.960 9 C -0.518 4.518 10 H 0.061 0.939 11 C 0.070 3.930 12 N -0.872 5.872 13 Si 0.889 3.111 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.083 4.083 18 C -0.226 4.226 19 C -0.136 4.136 20 C -0.111 4.111 21 C -0.073 4.073 22 H 0.121 0.879 23 H 0.126 0.874 24 H 0.260 0.740 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.700 -1.402 -2.577 5.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.043 4.043 3 C -0.076 4.076 4 C -0.091 4.091 5 C -0.153 4.153 6 C 0.009 3.991 7 C 0.080 3.920 8 H 0.058 0.942 9 C -0.556 4.556 10 H 0.079 0.921 11 C -0.134 4.134 12 N -0.508 5.508 13 Si 0.717 3.283 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.102 4.102 18 C -0.263 4.263 19 C -0.173 4.173 20 C -0.129 4.129 21 C -0.093 4.093 22 H 0.139 0.861 23 H 0.144 0.856 24 H 0.070 0.930 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.151 0.849 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.269 -1.407 -2.620 6.939 hybrid contribution 0.989 0.138 0.945 1.375 sum -5.280 -1.269 -1.675 5.683 Atomic orbital electron populations 1.81177 1.12343 1.09375 1.09820 1.25948 0.92854 0.92770 0.92717 1.15870 0.83609 1.02557 1.05519 1.21014 0.94409 0.96617 0.97047 1.21088 0.92928 1.00327 1.00974 1.20863 0.98796 0.90184 0.89227 1.17658 0.83957 0.92540 0.97835 0.94185 1.21004 0.91589 1.50534 0.92499 0.92122 1.24945 0.96954 0.94743 0.96767 1.70023 1.01973 1.48161 1.30690 0.86587 0.78952 0.77821 0.84975 1.19724 1.21065 1.21058 1.22195 1.00763 0.98912 0.88327 1.23083 1.00194 0.99605 1.03463 1.22447 0.89988 1.01147 1.03747 1.21043 0.92363 0.99870 0.99591 1.21106 0.94608 0.96690 0.96929 0.86109 0.85610 0.93049 0.89731 0.90984 0.90379 0.91118 0.89573 0.84919 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.50 18.54 41.84 0.78 -6.72 16 2 C 0.27 4.10 15.33 -22.47 -0.34 3.76 16 3 C -0.07 -1.05 5.73 -106.93 -0.61 -1.66 16 4 C -0.07 -1.00 9.76 -39.17 -0.38 -1.38 16 5 C -0.14 -2.16 9.65 -39.64 -0.38 -2.54 16 6 C 0.01 0.18 4.39 -104.53 -0.46 -0.27 16 7 C 0.10 2.13 2.10 -92.93 -0.20 1.93 16 8 H 0.04 0.94 7.62 -51.93 -0.40 0.55 16 9 C -0.52 -12.62 8.22 -34.44 -0.28 -12.90 16 10 H 0.06 1.49 7.60 -52.49 -0.40 1.09 16 11 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 12 N -0.87 -22.47 11.44 55.43 0.63 -21.84 16 13 Si 0.89 19.80 29.54 -169.99 -5.02 14.78 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 C -0.08 -1.73 3.85 -90.58 -0.35 -2.07 16 18 C -0.23 -4.06 9.87 -26.73 -0.26 -4.33 16 19 C -0.14 -2.74 9.06 -26.69 -0.24 -2.98 16 20 C -0.11 -1.85 8.80 -39.64 -0.35 -2.20 16 21 C -0.07 -1.06 9.76 -39.17 -0.38 -1.44 16 22 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 23 H 0.13 1.88 7.94 -52.49 -0.42 1.46 16 24 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 25 H 0.08 1.85 8.11 -51.93 -0.42 1.43 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.09 1.83 8.05 -51.93 -0.42 1.41 16 30 H 0.13 2.22 8.05 -52.49 -0.42 1.80 16 31 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 LS Contribution 278.87 15.07 4.20 4.20 Total: -1.00 -25.54 278.87 -7.47 -33.01 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -3.72 Total: 1.01 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -4.34 Total: -24.44 kcal Atomic # 7 Polarization: -29.97 SS G_CDS: 1.41 Total: -28.56 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -25.54 -7.47 -33.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174989.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.390 kcal (2) G-P(sol) polarization free energy of solvation -25.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds