Wall clock time and date at job start Mon Mar 30 2020 02:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39632 * 120.14605 * 139.93243 * 3 2 1 5 5 C 1.37947 * 119.84347 * 180.02562 * 4 3 2 6 6 C 1.38366 * 120.15306 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.85064 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.47012 * 359.97438 * 7 6 5 9 9 C 1.50693 * 109.47460 * 119.99597 * 7 6 5 10 10 H 1.07998 * 120.00289 * 0.02562 * 9 7 6 11 11 C 1.37885 * 120.00042 * 180.02562 * 9 7 6 12 12 N 1.31514 * 120.00003 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99826 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47278 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.46946 * 120.00343 * 13 11 9 16 16 H 1.48507 * 109.47025 * 240.00070 * 13 11 9 17 17 C 1.53003 * 109.47087 * 239.99940 * 7 6 5 18 18 C 1.53000 * 117.49792 * 59.99477 * 17 7 6 19 19 C 1.53002 * 60.02940 * 107.48056 * 18 17 7 20 20 C 1.38362 * 120.30113 * 0.23092 * 6 5 4 21 21 C 1.37948 * 120.15397 * 359.49485 * 20 6 5 22 22 H 1.07999 * 120.07982 * 359.97438 * 4 3 2 23 23 H 1.07998 * 119.92344 * 179.97438 * 5 4 3 24 24 H 0.96994 * 120.00352 * 179.97438 * 12 11 9 25 25 H 1.08999 * 115.55832 * 274.31094 * 17 7 6 26 26 H 1.09002 * 117.49833 * 214.98161 * 18 17 7 27 27 H 1.09002 * 117.49953 * 359.97438 * 18 17 7 28 28 H 1.09000 * 117.49996 * 107.50493 * 19 18 17 29 29 H 1.08999 * 117.49664 * 252.51862 * 19 18 17 30 30 H 1.08001 * 119.92084 * 179.72463 * 20 6 5 31 31 H 1.08003 * 120.07578 * 180.25383 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 0.9250 -0.7772 5 6 4.6483 0.9197 -0.7730 6 6 5.3374 0.0009 -0.0013 7 6 6.8444 0.0008 -0.0022 8 1 7.2074 0.7873 -0.6639 9 6 7.3476 0.2486 1.3965 10 1 6.6464 0.3915 2.2053 11 6 8.7034 0.2930 1.6436 12 7 9.5574 0.1196 0.6586 13 14 9.3271 0.5995 3.3775 14 1 8.1727 0.7606 4.2976 15 1 10.1530 -0.5535 3.8174 16 1 10.1516 1.8345 3.3959 17 6 7.3540 -1.3551 -0.4948 18 6 6.9488 -1.7926 -1.9038 19 6 8.3875 -1.3538 -1.6239 20 6 4.6492 -0.9212 0.7671 21 6 3.2697 -0.9235 0.7766 22 1 2.7322 1.6419 -1.3810 23 1 5.1917 1.6338 -1.3739 24 1 10.5111 0.1512 0.8323 25 1 7.4415 -2.1297 0.2670 26 1 6.7697 -2.8550 -2.0689 27 1 6.3187 -1.1146 -2.4797 28 1 9.1550 -2.1275 -1.6050 29 1 8.7040 -0.3870 -2.0154 30 1 5.1933 -1.6385 1.3637 31 1 2.7338 -1.6413 1.3800 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260174989.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:37 Heat of formation + Delta-G solvation = 56.211055 kcal Electronic energy + Delta-G solvation = -14655.123674 eV Core-core repulsion = 12287.467787 eV Total energy + Delta-G solvation = -2367.655887 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.46867 -38.28404 -37.17666 -34.62909 -32.92778 -31.82629 -29.24851 -25.69398 -23.59027 -23.32911 -22.73298 -20.78432 -19.70002 -18.37590 -16.80627 -16.27177 -16.14322 -15.53977 -15.28948 -14.98458 -14.66316 -14.22422 -14.18874 -13.88369 -13.57137 -13.19548 -12.86808 -12.78261 -12.39370 -12.13867 -12.05894 -11.74078 -11.58214 -11.46815 -10.58573 -10.49618 -10.15115 -9.75506 -9.37994 -7.99695 -6.11683 0.02649 0.62528 1.44731 1.50117 1.58035 1.67180 2.08255 2.50556 2.98362 3.11347 3.28619 3.44575 4.10960 4.14090 4.30608 4.36676 4.58244 4.67279 4.69650 4.78136 5.00777 5.04272 5.15855 5.23550 5.40200 5.49436 5.56250 5.59891 5.64175 5.74723 5.91540 6.08455 6.16448 6.42320 6.51096 6.96604 7.55050 9.04199 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.028556 B = 0.007762 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.298756 B = 3606.592101 C = 4227.490663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.290 3.710 3 C -0.067 4.067 4 C -0.056 4.056 5 C -0.140 4.140 6 C -0.012 4.012 7 C 0.102 3.898 8 H 0.012 0.988 9 C -0.525 4.525 10 H 0.054 0.946 11 C 0.027 3.973 12 N -0.895 5.895 13 Si 0.940 3.060 14 H -0.270 1.270 15 H -0.285 1.285 16 H -0.287 1.287 17 C -0.098 4.098 18 C -0.191 4.191 19 C -0.146 4.146 20 C -0.120 4.120 21 C -0.061 4.061 22 H 0.150 0.850 23 H 0.132 0.868 24 H 0.257 0.743 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.126 0.874 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.309 -1.600 -2.729 7.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.023 4.023 3 C -0.070 4.070 4 C -0.077 4.077 5 C -0.158 4.158 6 C -0.013 4.013 7 C 0.084 3.916 8 H 0.030 0.970 9 C -0.563 4.563 10 H 0.072 0.928 11 C -0.174 4.174 12 N -0.532 5.532 13 Si 0.768 3.232 14 H -0.195 1.195 15 H -0.211 1.211 16 H -0.213 1.213 17 C -0.117 4.117 18 C -0.227 4.227 19 C -0.183 4.183 20 C -0.138 4.138 21 C -0.082 4.082 22 H 0.168 0.832 23 H 0.150 0.850 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.144 0.856 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.887 -1.605 -2.769 8.512 hybrid contribution 1.434 0.213 0.985 1.753 sum -6.452 -1.392 -1.784 6.838 Atomic orbital electron populations 1.81216 1.13043 1.10152 1.10595 1.25813 0.92561 0.92014 0.91961 1.15913 0.83310 1.02476 1.05317 1.21233 0.93556 0.96483 0.96407 1.21145 0.93807 0.99971 1.00849 1.20643 0.96966 0.92204 0.91454 1.17438 0.86533 0.91982 0.95648 0.96952 1.21308 0.91554 1.49553 0.93905 0.92775 1.25544 0.97416 0.95093 0.99391 1.70126 1.01845 1.49358 1.31890 0.85782 0.78271 0.77318 0.81878 1.19467 1.21131 1.21300 1.22001 1.02173 0.98312 0.89174 1.23077 0.98076 1.00944 1.00649 1.22366 0.91258 1.00519 1.04205 1.20976 0.93298 0.99750 0.99751 1.21263 0.93649 0.96756 0.96492 0.83212 0.85022 0.93376 0.91343 0.88836 0.89383 0.91104 0.91283 0.85630 0.83578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -14.48 18.54 19.01 0.35 -14.13 16 2 C 0.29 7.86 15.33 88.33 1.35 9.21 16 3 C -0.07 -1.73 5.73 -21.36 -0.12 -1.85 16 4 C -0.06 -1.42 9.76 22.54 0.22 -1.20 16 5 C -0.14 -4.22 9.65 22.23 0.21 -4.01 16 6 C -0.01 -0.42 4.39 -19.81 -0.09 -0.51 16 7 C 0.10 4.48 2.10 -12.29 -0.03 4.46 16 8 H 0.01 0.60 7.62 -2.38 -0.02 0.58 16 9 C -0.53 -25.96 8.22 25.60 0.21 -25.75 16 10 H 0.05 2.68 7.60 -2.91 -0.02 2.66 16 11 C 0.03 1.35 5.30 84.66 0.45 1.80 16 12 N -0.89 -47.15 11.44 21.45 0.25 -46.90 16 13 Si 0.94 41.07 29.54 68.60 2.03 43.09 16 14 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 15 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 17 C -0.10 -4.08 3.85 -10.77 -0.04 -4.12 16 18 C -0.19 -6.58 9.87 30.60 0.30 -6.28 16 19 C -0.15 -5.93 9.06 30.62 0.28 -5.65 16 20 C -0.12 -3.84 8.80 22.23 0.20 -3.64 16 21 C -0.06 -1.62 9.76 22.54 0.22 -1.40 16 22 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 23 H 0.13 3.77 7.94 -2.91 -0.02 3.74 16 24 H 0.26 13.14 8.31 -92.71 -0.77 12.37 16 25 H 0.07 3.05 8.11 -2.39 -0.02 3.03 16 26 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 27 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.07 3.01 8.05 -2.39 -0.02 2.99 16 30 H 0.13 4.15 8.05 -2.91 -0.02 4.13 16 31 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -54.20 278.87 6.91 -47.29 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 1.12 Total: 9.59 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 3.17 Total: -38.94 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: 0.60 Total: -61.03 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -54.20 6.91 -47.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174989.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.504 kcal (2) G-P(sol) polarization free energy of solvation -54.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds