Wall clock time and date at job start Mon Mar 30 2020 02:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99818 * 2 1 4 4 H 1.48498 * 109.47345 * 269.99851 * 3 2 1 5 5 H 1.48505 * 109.47142 * 30.00228 * 3 2 1 6 6 H 1.48504 * 109.46987 * 149.99873 * 3 2 1 7 7 C 1.37877 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99943 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99711 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46725 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.63260 * 54.60809 * 10 9 7 12 12 C 1.53246 * 109.62733 * 175.00271 * 10 9 7 13 13 N 1.46469 * 109.86012 * 181.90628 * 12 10 9 14 14 C 1.46899 * 111.00232 * 162.23307 * 13 12 10 15 15 C 1.53000 * 117.50080 * 180.02562 * 14 13 12 16 16 C 1.53002 * 60.02940 * 252.49785 * 15 14 13 17 17 C 1.46466 * 112.56084 * 287.34288 * 13 12 10 18 18 C 1.53255 * 109.86042 * 72.65180 * 17 13 12 19 19 S 1.81896 * 108.50622 * 298.00231 * 18 17 13 20 20 H 0.97000 * 120.00196 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46785 * 60.00198 * 9 7 2 22 22 H 1.08997 * 109.46964 * 300.00433 * 9 7 2 23 23 H 1.09000 * 109.40940 * 61.78761 * 12 10 9 24 24 H 1.09004 * 109.34412 * 301.98117 * 12 10 9 25 25 H 1.09007 * 115.55032 * 325.67076 * 14 13 12 26 26 H 1.09002 * 117.49833 * 359.97438 * 15 14 13 27 27 H 1.09002 * 117.49953 * 144.99931 * 15 14 13 28 28 H 1.09000 * 117.49996 * 107.50493 * 16 15 14 29 29 H 1.08999 * 117.49664 * 252.51862 * 16 15 14 30 30 H 1.08999 * 109.40879 * 192.77467 * 17 13 12 31 31 H 1.09004 * 109.40588 * 312.53843 * 17 13 12 32 32 H 1.08999 * 109.62702 * 178.29637 * 18 17 13 33 33 H 1.09004 * 109.62377 * 57.70375 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 1 3.5826 -3.1794 -0.8394 12 6 5.5487 -2.6426 -0.1286 13 7 6.0387 -4.0221 -0.1759 14 6 7.4063 -4.0770 -0.7092 15 6 8.0651 -5.4532 -0.8241 16 6 8.5264 -4.4727 0.2562 17 6 5.9546 -4.6931 1.1232 18 6 4.4920 -5.0145 1.4495 19 16 3.5682 -3.4514 1.5595 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6804 0.8889 22 1 3.8745 -0.6799 -0.8911 23 1 5.9852 -2.1325 0.7301 24 1 5.8374 -2.1242 -1.0430 25 1 7.6409 -3.3412 -1.4785 26 1 7.4838 -6.3177 -0.5035 27 1 8.7332 -5.6225 -1.6685 28 1 8.2485 -4.6923 1.2870 29 1 9.4978 -3.9968 0.1222 30 1 6.5301 -5.6182 1.0910 31 1 6.3628 -4.0406 1.8951 32 1 4.4366 -5.5405 2.4026 33 1 4.0687 -5.6353 0.6600 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260374867.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:17 Heat of formation + Delta-G solvation = 30.222210 kcal Electronic energy + Delta-G solvation = -13928.127417 eV Core-core repulsion = 11694.788520 eV Total energy + Delta-G solvation = -2233.338897 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.20890 -35.29838 -33.48138 -31.70068 -29.87691 -26.83188 -23.58319 -22.68868 -22.21809 -20.51964 -19.72071 -16.88471 -16.76345 -15.99755 -15.41515 -14.43717 -14.22740 -13.72116 -13.57226 -13.08135 -12.79683 -12.57785 -12.21990 -11.82980 -11.63833 -11.49546 -11.10844 -10.90015 -10.74658 -10.57369 -10.20389 -9.91563 -9.67520 -9.27059 -8.94147 -8.51070 -8.14075 -6.93110 -6.00598 -3.98542 2.41089 3.27939 3.31101 3.39053 3.41376 3.55568 3.92742 4.46365 4.68572 4.80922 4.86770 5.04030 5.21012 5.32977 5.42176 5.43842 5.49764 5.63138 5.64338 5.74412 5.84816 5.93079 5.96570 6.06150 6.21855 6.50805 6.99629 7.04907 7.11671 7.25508 7.74410 8.55347 9.07328 9.59942 11.12491 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.040892 B = 0.007300 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.570766 B = 3834.752804 C = 4275.944129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.514 4.514 8 H 0.081 0.919 9 C 0.004 3.996 10 C -0.020 4.020 11 H 0.089 0.911 12 C 0.060 3.940 13 N -0.520 5.520 14 C 0.031 3.969 15 C -0.174 4.174 16 C -0.224 4.224 17 C 0.055 3.945 18 C -0.100 4.100 19 S -0.233 6.233 20 H 0.263 0.737 21 H 0.025 0.975 22 H 0.026 0.974 23 H 0.046 0.954 24 H 0.082 0.918 25 H 0.120 0.880 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.998 -8.657 0.354 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.552 4.552 8 H 0.099 0.901 9 C -0.035 4.035 10 C -0.149 4.149 11 H 0.108 0.892 12 C -0.069 4.069 13 N -0.242 5.242 14 C -0.078 4.078 15 C -0.212 4.212 16 C -0.263 4.263 17 C -0.074 4.074 18 C -0.249 4.249 19 S -0.006 6.006 20 H 0.072 0.928 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.138 0.862 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.814 -8.424 0.883 17.065 hybrid contribution 1.635 0.853 -0.451 1.899 sum 16.449 -7.570 0.432 18.113 Atomic orbital electron populations 1.69907 1.06210 1.26752 1.50972 1.24971 0.94699 0.98851 0.94670 0.86869 0.80495 0.84073 0.78430 1.20309 1.21299 1.19048 1.21068 0.88635 0.94940 1.50580 0.90092 1.19487 0.98182 0.88726 0.97107 1.23273 0.94146 1.01771 0.95733 0.89249 1.22487 0.95544 0.87130 1.01767 1.61008 1.19223 1.18151 1.25795 1.22642 0.85815 0.98914 1.00447 1.23077 1.03152 0.94034 1.00949 1.23582 1.00247 1.05659 0.96791 1.22317 0.96310 0.98932 0.89822 1.23534 0.96690 0.99999 1.04692 1.87449 1.64730 1.18224 1.30216 0.92756 0.95647 0.95578 0.93567 0.89993 0.86185 0.88619 0.88536 0.88456 0.88926 0.90389 0.93446 0.88302 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.51 -14.63 9.12 -34.44 -0.31 -14.94 16 8 H 0.08 2.52 7.90 -52.48 -0.41 2.11 16 9 C 0.00 0.09 3.53 -27.88 -0.10 -0.01 16 10 C -0.02 -0.40 2.70 -26.60 -0.07 -0.48 16 11 H 0.09 1.91 8.14 -51.93 -0.42 1.48 16 12 C 0.06 0.98 4.71 -3.93 -0.02 0.96 16 13 N -0.52 -7.47 4.62 -227.01 -1.05 -8.52 16 14 C 0.03 0.37 6.10 -67.68 -0.41 -0.05 16 15 C -0.17 -1.72 9.88 -26.73 -0.26 -1.98 16 16 C -0.22 -2.23 9.60 -26.69 -0.26 -2.49 16 17 C 0.06 0.74 4.04 -3.93 -0.02 0.72 16 18 C -0.10 -1.49 6.69 37.29 0.25 -1.24 16 19 S -0.23 -4.67 21.18 -107.50 -2.28 -6.94 16 20 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 21 H 0.03 0.62 7.20 -51.93 -0.37 0.24 16 22 H 0.03 0.60 7.57 -51.93 -0.39 0.20 16 23 H 0.05 0.77 7.91 -51.93 -0.41 0.36 16 24 H 0.08 1.25 7.77 -51.93 -0.40 0.85 16 25 H 0.12 1.32 7.85 -51.93 -0.41 0.91 16 26 H 0.10 0.96 7.19 -51.93 -0.37 0.59 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.10 0.99 6.12 -51.93 -0.32 0.67 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.89 5.61 -51.93 -0.29 0.60 16 31 H 0.05 0.65 7.55 -51.93 -0.39 0.26 16 32 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 271.50 15.07 4.09 4.09 Total: -1.00 -30.54 271.50 -9.49 -40.03 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.06 Total: -0.88 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -1.30 Total: -17.57 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.28 Total: -35.69 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: -4.67 SS G_CDS: -2.28 Total: -6.94 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.54 -9.49 -40.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260374867.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.247 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds