Wall clock time and date at job start Mon Mar 30 2020 02:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99818 * 2 1 4 4 H 1.48498 * 109.47345 * 269.99851 * 3 2 1 5 5 H 1.48505 * 109.47142 * 30.00228 * 3 2 1 6 6 H 1.48504 * 109.46987 * 149.99873 * 3 2 1 7 7 C 1.37877 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99943 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99711 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46725 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.63260 * 54.60809 * 10 9 7 12 12 C 1.53246 * 109.62733 * 175.00271 * 10 9 7 13 13 N 1.46469 * 109.86012 * 181.90628 * 12 10 9 14 14 C 1.46899 * 111.00232 * 162.23307 * 13 12 10 15 15 C 1.53000 * 117.50080 * 180.02562 * 14 13 12 16 16 C 1.53002 * 60.02940 * 252.49785 * 15 14 13 17 17 C 1.46466 * 112.56084 * 287.34288 * 13 12 10 18 18 C 1.53255 * 109.86042 * 72.65180 * 17 13 12 19 19 S 1.81896 * 108.50622 * 298.00231 * 18 17 13 20 20 H 0.97000 * 120.00196 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46785 * 60.00198 * 9 7 2 22 22 H 1.08997 * 109.46964 * 300.00433 * 9 7 2 23 23 H 1.09000 * 109.40940 * 61.78761 * 12 10 9 24 24 H 1.09004 * 109.34412 * 301.98117 * 12 10 9 25 25 H 1.09007 * 115.55032 * 325.67076 * 14 13 12 26 26 H 1.09002 * 117.49833 * 359.97438 * 15 14 13 27 27 H 1.09002 * 117.49953 * 144.99931 * 15 14 13 28 28 H 1.09000 * 117.49996 * 107.50493 * 16 15 14 29 29 H 1.08999 * 117.49664 * 252.51862 * 16 15 14 30 30 H 1.08999 * 109.40879 * 192.77467 * 17 13 12 31 31 H 1.09004 * 109.40588 * 312.53843 * 17 13 12 32 32 H 1.08999 * 109.62702 * 178.29637 * 18 17 13 33 33 H 1.09004 * 109.62377 * 57.70375 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 1 3.5826 -3.1794 -0.8394 12 6 5.5487 -2.6426 -0.1286 13 7 6.0387 -4.0221 -0.1759 14 6 7.4063 -4.0770 -0.7092 15 6 8.0651 -5.4532 -0.8241 16 6 8.5264 -4.4727 0.2562 17 6 5.9546 -4.6931 1.1232 18 6 4.4920 -5.0145 1.4495 19 16 3.5682 -3.4514 1.5595 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6804 0.8889 22 1 3.8745 -0.6799 -0.8911 23 1 5.9852 -2.1325 0.7301 24 1 5.8374 -2.1242 -1.0430 25 1 7.6409 -3.3412 -1.4785 26 1 7.4838 -6.3177 -0.5035 27 1 8.7332 -5.6225 -1.6685 28 1 8.2485 -4.6923 1.2870 29 1 9.4978 -3.9968 0.1222 30 1 6.5301 -5.6182 1.0910 31 1 6.3628 -4.0406 1.8951 32 1 4.4366 -5.5405 2.4026 33 1 4.0687 -5.6353 0.6600 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260374867.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:17 Heat of formation + Delta-G solvation = 10.595679 kcal Electronic energy + Delta-G solvation = -13928.978487 eV Core-core repulsion = 11694.788520 eV Total energy + Delta-G solvation = -2234.189967 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.20780 -36.63669 -35.14171 -33.51694 -31.22677 -28.52807 -24.96910 -23.91146 -23.15185 -22.17252 -20.80860 -18.90523 -18.03576 -17.25978 -16.58638 -16.23114 -15.69589 -15.12565 -14.89513 -14.50351 -14.38081 -13.96193 -13.59824 -13.23756 -13.06881 -12.67839 -12.44323 -12.25097 -12.14388 -11.81345 -11.67356 -11.50696 -11.41705 -11.18778 -10.76002 -10.41859 -9.17883 -8.53582 -8.24672 -6.28739 0.95448 1.35528 1.38785 1.49350 1.82432 2.37454 2.57299 3.06054 3.09909 3.76235 3.88629 3.97373 4.04725 4.11508 4.22003 4.25968 4.38511 4.44235 4.61369 4.72749 4.77728 4.79734 4.88575 4.96106 5.08036 5.08901 5.25371 5.35279 5.60499 6.00354 6.05594 6.30740 6.77817 7.33347 8.91643 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.040892 B = 0.007300 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.570766 B = 3834.752804 C = 4275.944129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.947 3.053 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.518 4.518 8 H 0.035 0.965 9 C 0.009 3.991 10 C -0.008 4.008 11 H 0.068 0.932 12 C 0.072 3.928 13 N -0.531 5.531 14 C 0.008 3.992 15 C -0.163 4.163 16 C -0.213 4.213 17 C 0.060 3.940 18 C -0.077 4.077 19 S -0.310 6.310 20 H 0.265 0.735 21 H 0.023 0.977 22 H 0.041 0.959 23 H 0.045 0.955 24 H 0.095 0.905 25 H 0.126 0.874 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.046 0.954 32 H 0.123 0.877 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.263 -8.850 0.167 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.171 1.171 7 C -0.556 4.556 8 H 0.053 0.947 9 C -0.030 4.030 10 C -0.138 4.138 11 H 0.087 0.913 12 C -0.057 4.057 13 N -0.253 5.253 14 C -0.101 4.101 15 C -0.201 4.201 16 C -0.252 4.252 17 C -0.069 4.069 18 C -0.225 4.225 19 S -0.083 6.083 20 H 0.074 0.926 21 H 0.042 0.958 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.113 0.887 25 H 0.144 0.856 26 H 0.113 0.887 27 H 0.131 0.869 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.141 0.859 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 18.110 -8.639 0.686 20.076 hybrid contribution 0.587 0.743 -0.386 1.023 sum 18.697 -7.895 0.300 20.298 Atomic orbital electron populations 1.70076 1.08328 1.27969 1.52861 1.25966 0.95583 1.03320 0.94316 0.85705 0.79511 0.78410 0.79337 1.18685 1.21234 1.17050 1.21300 0.91292 0.93255 1.49793 0.94698 1.19371 0.94829 0.91434 0.97368 1.23041 0.97024 0.99162 0.94539 0.91309 1.22234 0.92272 0.88893 1.02297 1.60942 1.21396 1.16641 1.26299 1.22756 0.84835 1.00820 1.01677 1.23158 1.02536 0.92944 1.01419 1.23615 0.99979 1.05053 0.96517 1.22314 0.95059 1.00047 0.89507 1.23601 0.96821 0.96120 1.06003 1.87577 1.67328 1.22690 1.30753 0.92625 0.95839 0.94122 0.93690 0.88707 0.85590 0.88683 0.86887 0.88518 0.87561 0.87564 0.93534 0.85915 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 2 C 0.00 0.27 5.47 84.65 0.46 0.73 16 3 Si 0.95 44.64 27.47 68.60 1.88 46.52 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 7 C -0.52 -30.48 9.12 25.60 0.23 -30.24 16 8 H 0.03 2.31 7.90 -2.91 -0.02 2.29 16 9 C 0.01 0.40 3.53 29.85 0.11 0.51 16 10 C -0.01 -0.34 2.70 30.68 0.08 -0.26 16 11 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 12 C 0.07 2.26 4.71 86.47 0.41 2.66 16 13 N -0.53 -14.00 4.62 -872.12 -4.03 -18.03 16 14 C 0.01 0.16 6.10 44.94 0.27 0.43 16 15 C -0.16 -2.59 9.88 30.60 0.30 -2.28 16 16 C -0.21 -3.43 9.60 30.62 0.29 -3.13 16 17 C 0.06 1.43 4.04 86.47 0.35 1.78 16 18 C -0.08 -2.17 6.69 72.07 0.48 -1.68 16 19 S -0.31 -12.58 21.18 -56.49 -1.20 -13.78 16 20 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 21 H 0.02 1.12 7.20 -2.39 -0.02 1.10 16 22 H 0.04 1.80 7.57 -2.39 -0.02 1.78 16 23 H 0.04 1.41 7.91 -2.39 -0.02 1.39 16 24 H 0.09 2.68 7.77 -2.39 -0.02 2.67 16 25 H 0.13 2.38 7.85 -2.38 -0.02 2.36 16 26 H 0.09 1.54 7.19 -2.39 -0.02 1.53 16 27 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.10 1.60 6.12 -2.39 -0.01 1.58 16 29 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.11 2.00 5.61 -2.39 -0.01 1.99 16 31 H 0.05 1.15 7.55 -2.38 -0.02 1.14 16 32 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 33 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -68.40 271.50 0.97 -67.43 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 1.02 Total: 10.20 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 2.99 Total: -31.49 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -3.73 Total: -78.88 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Atomic # 16 Polarization: -12.58 SS G_CDS: -1.20 Total: -13.78 kcal Total: -68.40 0.97 -67.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260374867.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.024 kcal (2) G-P(sol) polarization free energy of solvation -68.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds