Wall clock time and date at job start Mon Mar 30 2020 02:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.62971 * 304.99858 * 10 9 7 12 12 C 1.53251 * 109.63405 * 184.60713 * 10 9 7 13 13 N 1.46467 * 109.86052 * 178.29280 * 12 10 9 14 14 C 1.46900 * 110.99984 * 197.76523 * 13 12 10 15 15 C 1.52997 * 117.49893 * 248.74568 * 14 13 12 16 16 C 1.52995 * 117.49995 * 180.08538 * 14 13 12 17 17 C 1.46474 * 112.55973 * 72.65465 * 13 12 10 18 18 C 1.53248 * 109.86061 * 287.34571 * 17 13 12 19 19 S 1.81905 * 109.62876 * 65.39087 * 10 9 7 20 20 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 21 21 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 22 22 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 23 23 H 1.09003 * 109.40350 * 298.41333 * 12 10 9 24 24 H 1.08998 * 109.40069 * 58.17073 * 12 10 9 25 25 H 1.09003 * 115.54647 * 34.41725 * 14 13 12 26 26 H 1.09007 * 117.49892 * 0.02562 * 15 14 13 27 27 H 1.09006 * 117.49754 * 145.01663 * 15 14 13 28 28 H 1.08995 * 117.50206 * 214.97751 * 16 14 13 29 29 H 1.09006 * 117.49579 * 359.97438 * 16 14 13 30 30 H 1.08999 * 109.39941 * 47.46105 * 17 13 12 31 31 H 1.09000 * 109.40398 * 167.22471 * 17 13 12 32 32 H 1.08995 * 109.63032 * 181.71051 * 18 17 13 33 33 H 1.08999 * 109.62876 * 302.10080 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 1 2.9308 -3.5615 -0.8249 12 6 1.4863 -4.9889 -0.0935 13 7 2.4356 -6.1036 -0.1300 14 6 1.7980 -7.3213 -0.6485 15 6 1.5790 -8.4760 0.3310 16 6 2.6591 -8.5819 -0.7483 17 6 3.0611 -6.3519 1.1710 18 6 4.0715 -5.2427 1.4830 19 16 3.1846 -3.6561 1.5743 20 1 -0.4850 0.8401 -0.0041 21 1 0.6241 -2.5528 0.9015 22 1 0.6247 -2.5609 -0.8785 23 1 0.8278 -5.1019 0.7677 24 1 0.8904 -4.9905 -1.0062 25 1 1.0433 -7.1650 -1.4193 26 1 1.9076 -8.3320 1.3604 27 1 0.6802 -9.0796 0.2045 28 1 2.4707 -9.2553 -1.5844 29 1 3.6989 -8.5077 -0.4297 30 1 2.2932 -6.3703 1.9443 31 1 3.5741 -7.3133 1.1486 32 1 4.5565 -5.4471 2.4374 33 1 4.8215 -5.1979 0.6933 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260374874.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:19 Heat of formation + Delta-G solvation = 25.708472 kcal Electronic energy + Delta-G solvation = -13887.649687 eV Core-core repulsion = 11654.115059 eV Total energy + Delta-G solvation = -2233.534627 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.13718 -35.18650 -33.46218 -31.56018 -29.66160 -26.43709 -23.58442 -22.74758 -22.26471 -20.50945 -19.71507 -16.83525 -16.33603 -15.91047 -15.31079 -14.51464 -14.24745 -13.56789 -13.46697 -13.13128 -12.76359 -12.21824 -12.07883 -11.74368 -11.54270 -11.24618 -10.95265 -10.82289 -10.60897 -10.57609 -10.40441 -10.05067 -9.46055 -9.22628 -8.87416 -8.33007 -8.06842 -6.89198 -5.99037 -3.99686 2.48158 3.34776 3.36953 3.41944 3.47774 3.62399 3.99583 4.50079 4.74786 4.86786 4.92191 5.10132 5.27143 5.38818 5.48115 5.53495 5.55786 5.68909 5.73894 5.81498 5.90101 6.01354 6.06311 6.11183 6.39554 6.69300 7.12351 7.21709 7.52010 7.65482 7.98848 8.37281 9.05087 9.63803 11.12526 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.048809 B = 0.006654 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.525953 B = 4206.828274 C = 4555.030250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.039 3.961 10 C -0.025 4.025 11 H 0.083 0.917 12 C 0.062 3.938 13 N -0.521 5.521 14 C 0.032 3.968 15 C -0.224 4.224 16 C -0.175 4.175 17 C 0.056 3.944 18 C -0.099 4.099 19 S -0.242 6.242 20 H 0.260 0.740 21 H 0.027 0.973 22 H 0.032 0.968 23 H 0.046 0.954 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.116 -15.158 0.393 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.001 3.999 10 C -0.154 4.154 11 H 0.102 0.898 12 C -0.067 4.067 13 N -0.243 5.243 14 C -0.077 4.077 15 C -0.263 4.263 16 C -0.213 4.213 17 C -0.073 4.073 18 C -0.248 4.248 19 S -0.016 6.016 20 H 0.070 0.930 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.138 0.862 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.385 -14.089 0.914 14.784 hybrid contribution -0.185 -0.235 -0.420 0.515 sum 4.200 -14.324 0.494 14.935 Atomic orbital electron populations 1.69959 1.06068 1.26664 1.50998 1.24981 0.94805 0.99261 0.95257 0.86568 0.80027 0.83301 0.78051 1.20720 1.21307 1.19655 1.21188 0.93373 0.90292 1.50224 0.91888 1.19022 0.92876 0.89898 0.98105 1.23517 0.99971 0.97151 0.94743 0.89842 1.22459 0.93102 0.89263 1.01859 1.61037 1.32960 1.04295 1.25974 1.22633 0.99765 0.84909 1.00412 1.23578 1.01237 1.04785 0.96684 1.23081 0.96865 1.00319 1.01057 1.22292 0.96894 0.98197 0.89934 1.23515 1.00195 0.96586 1.04515 1.87397 1.58027 1.24136 1.31994 0.93014 0.95512 0.95016 0.93563 0.89972 0.86174 0.88486 0.88921 0.88576 0.88687 0.93469 0.90504 0.88504 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.44 8.55 -34.44 -0.29 -14.74 16 8 H 0.06 1.78 7.62 -52.49 -0.40 1.38 16 9 C 0.04 1.00 4.46 -27.89 -0.12 0.88 16 10 C -0.02 -0.52 2.71 -26.60 -0.07 -0.59 16 11 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 12 C 0.06 1.08 4.72 -3.93 -0.02 1.06 16 13 N -0.52 -7.81 4.62 -227.06 -1.05 -8.86 16 14 C 0.03 0.40 6.10 -67.72 -0.41 -0.01 16 15 C -0.22 -2.36 9.60 -26.70 -0.26 -2.62 16 16 C -0.18 -1.81 9.88 -26.70 -0.26 -2.07 16 17 C 0.06 0.78 4.04 -3.93 -0.02 0.76 16 18 C -0.10 -1.50 6.68 37.29 0.25 -1.26 16 19 S -0.24 -4.92 21.14 -107.50 -2.27 -7.19 16 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 21 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 0.83 7.92 -51.93 -0.41 0.42 16 24 H 0.08 1.37 7.77 -51.93 -0.40 0.96 16 25 H 0.12 1.41 7.85 -51.93 -0.41 1.01 16 26 H 0.10 1.04 6.12 -51.93 -0.32 0.73 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 0.99 7.18 -51.93 -0.37 0.62 16 30 H 0.05 0.68 7.54 -51.93 -0.39 0.29 16 31 H 0.08 0.91 5.61 -51.93 -0.29 0.62 16 32 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 275.03 15.07 4.14 4.14 Total: -1.00 -29.73 275.03 -9.86 -39.58 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -5.09 Total: -1.54 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -1.31 Total: -17.02 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: -0.31 Total: -34.99 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -2.27 Total: -7.19 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.73 -9.86 -39.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260374874.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.293 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds