Wall clock time and date at job start Mon Mar 30 2020 02:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.62971 * 304.99858 * 10 9 7 12 12 C 1.53251 * 109.63405 * 184.60713 * 10 9 7 13 13 N 1.46467 * 109.86052 * 178.29280 * 12 10 9 14 14 C 1.46900 * 110.99984 * 197.76523 * 13 12 10 15 15 C 1.52997 * 117.49893 * 248.74568 * 14 13 12 16 16 C 1.52995 * 117.49995 * 180.08538 * 14 13 12 17 17 C 1.46474 * 112.55973 * 72.65465 * 13 12 10 18 18 C 1.53248 * 109.86061 * 287.34571 * 17 13 12 19 19 S 1.81905 * 109.62876 * 65.39087 * 10 9 7 20 20 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 21 21 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 22 22 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 23 23 H 1.09003 * 109.40350 * 298.41333 * 12 10 9 24 24 H 1.08998 * 109.40069 * 58.17073 * 12 10 9 25 25 H 1.09003 * 115.54647 * 34.41725 * 14 13 12 26 26 H 1.09007 * 117.49892 * 0.02562 * 15 14 13 27 27 H 1.09006 * 117.49754 * 145.01663 * 15 14 13 28 28 H 1.08995 * 117.50206 * 214.97751 * 16 14 13 29 29 H 1.09006 * 117.49579 * 359.97438 * 16 14 13 30 30 H 1.08999 * 109.39941 * 47.46105 * 17 13 12 31 31 H 1.09000 * 109.40398 * 167.22471 * 17 13 12 32 32 H 1.08995 * 109.63032 * 181.71051 * 18 17 13 33 33 H 1.08999 * 109.62876 * 302.10080 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 1 2.9308 -3.5615 -0.8249 12 6 1.4863 -4.9889 -0.0935 13 7 2.4356 -6.1036 -0.1300 14 6 1.7980 -7.3213 -0.6485 15 6 1.5790 -8.4760 0.3310 16 6 2.6591 -8.5819 -0.7483 17 6 3.0611 -6.3519 1.1710 18 6 4.0715 -5.2427 1.4830 19 16 3.1846 -3.6561 1.5743 20 1 -0.4850 0.8401 -0.0041 21 1 0.6241 -2.5528 0.9015 22 1 0.6247 -2.5609 -0.8785 23 1 0.8278 -5.1019 0.7677 24 1 0.8904 -4.9905 -1.0062 25 1 1.0433 -7.1650 -1.4193 26 1 1.9076 -8.3320 1.3604 27 1 0.6802 -9.0796 0.2045 28 1 2.4707 -9.2553 -1.5844 29 1 3.6989 -8.5077 -0.4297 30 1 2.2932 -6.3703 1.9443 31 1 3.5741 -7.3133 1.1486 32 1 4.5565 -5.4471 2.4374 33 1 4.8215 -5.1979 0.6933 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260374874.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:19 Heat of formation + Delta-G solvation = 7.739928 kcal Electronic energy + Delta-G solvation = -13888.428861 eV Core-core repulsion = 11654.115059 eV Total energy + Delta-G solvation = -2234.313802 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.20685 -36.60599 -35.18325 -33.31654 -31.06735 -28.23318 -25.14600 -24.04596 -23.19202 -22.20610 -20.83884 -18.50459 -17.99656 -17.24046 -16.57020 -16.44490 -15.60781 -15.00650 -14.77273 -14.70300 -14.02149 -13.90119 -13.52350 -13.09473 -13.01565 -12.67713 -12.51867 -12.42981 -12.21879 -11.90897 -11.70649 -11.45014 -11.35042 -11.13156 -10.60613 -10.37237 -9.19141 -8.51689 -8.19670 -6.27550 0.98129 1.39812 1.41279 1.52949 1.84268 2.41112 2.58267 3.06293 3.15423 3.76638 3.90434 3.97690 4.05503 4.11137 4.23131 4.28261 4.39283 4.49642 4.62015 4.74310 4.79799 4.84330 4.91006 4.97609 5.07975 5.24627 5.35693 5.52583 5.77450 5.98683 6.04161 6.21758 6.83990 7.39847 8.92342 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.048809 B = 0.006654 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.525953 B = 4206.828274 C = 4555.030250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.048 3.952 10 C -0.011 4.011 11 H 0.072 0.928 12 C 0.075 3.925 13 N -0.527 5.527 14 C 0.004 3.996 15 C -0.214 4.214 16 C -0.158 4.158 17 C 0.058 3.942 18 C -0.077 4.077 19 S -0.304 6.304 20 H 0.263 0.737 21 H -0.002 1.002 22 H 0.013 0.987 23 H 0.036 0.964 24 H 0.085 0.915 25 H 0.122 0.878 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.042 0.958 31 H 0.108 0.892 32 H 0.124 0.876 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.478 -16.795 0.370 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.564 4.564 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.141 4.141 11 H 0.090 0.910 12 C -0.054 4.054 13 N -0.249 5.249 14 C -0.105 4.105 15 C -0.253 4.253 16 C -0.196 4.196 17 C -0.071 4.071 18 C -0.225 4.225 19 S -0.078 6.078 20 H 0.072 0.928 21 H 0.016 0.984 22 H 0.031 0.969 23 H 0.054 0.946 24 H 0.103 0.897 25 H 0.139 0.861 26 H 0.115 0.885 27 H 0.123 0.877 28 H 0.132 0.868 29 H 0.116 0.884 30 H 0.061 0.939 31 H 0.126 0.874 32 H 0.142 0.858 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.752 -15.748 0.881 16.789 hybrid contribution -0.581 0.176 -0.398 0.726 sum 5.171 -15.572 0.484 16.415 Atomic orbital electron populations 1.70075 1.07565 1.27688 1.51947 1.25852 0.95689 1.02968 0.94874 0.85519 0.78647 0.78845 0.78526 1.19553 1.20738 1.19290 1.21486 0.93321 0.91679 1.49907 0.92374 1.18792 0.93175 0.91334 0.95719 1.23165 0.98910 0.97426 0.94561 0.90968 1.22162 0.92917 0.88810 1.01540 1.60996 1.32499 1.04792 1.26613 1.22745 1.01427 0.84560 1.01737 1.23618 1.01992 1.03204 0.96477 1.23168 0.96739 0.98338 1.01330 1.22326 0.96567 0.98849 0.89332 1.23607 0.99730 0.93001 1.06208 1.87445 1.59223 1.29359 1.31763 0.92797 0.98381 0.96906 0.94588 0.89666 0.86054 0.88466 0.87664 0.86814 0.88378 0.93944 0.87371 0.85786 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.96 45.66 29.54 68.60 2.03 47.68 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.53 -30.45 8.55 25.60 0.22 -30.23 16 8 H 0.06 3.35 7.62 -2.91 -0.02 3.33 16 9 C 0.05 2.56 4.46 29.85 0.13 2.69 16 10 C -0.01 -0.49 2.71 30.68 0.08 -0.41 16 11 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 12 C 0.08 2.63 4.72 86.47 0.41 3.04 16 13 N -0.53 -14.96 4.62 -872.27 -4.03 -18.99 16 14 C 0.00 0.09 6.10 44.91 0.27 0.36 16 15 C -0.21 -3.83 9.60 30.62 0.29 -3.54 16 16 C -0.16 -2.68 9.88 30.62 0.30 -2.38 16 17 C 0.06 1.46 4.04 86.47 0.35 1.81 16 18 C -0.08 -2.16 6.68 72.07 0.48 -1.68 16 19 S -0.30 -12.39 21.14 -56.49 -1.19 -13.59 16 20 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 21 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 22 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.04 1.32 7.92 -2.39 -0.02 1.30 16 24 H 0.09 2.88 7.77 -2.39 -0.02 2.86 16 25 H 0.12 2.66 7.85 -2.39 -0.02 2.64 16 26 H 0.10 1.76 6.12 -2.38 -0.01 1.75 16 27 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.10 1.64 7.18 -2.38 -0.02 1.62 16 30 H 0.04 1.14 7.54 -2.39 -0.02 1.12 16 31 H 0.11 2.11 5.61 -2.39 -0.01 2.10 16 32 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -65.07 275.03 1.17 -63.91 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.07 Total: 7.47 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 3.01 Total: -29.65 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -3.74 Total: -75.83 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 16 Polarization: -12.39 SS G_CDS: -1.19 Total: -13.59 kcal Total: -65.07 1.17 -63.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260374874.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.647 kcal (2) G-P(sol) polarization free energy of solvation -65.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds