Wall clock time and date at job start Mon Mar 30 2020 02:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99852 * 2 1 4 4 H 1.48499 * 109.47115 * 270.00217 * 3 2 1 5 5 H 1.48498 * 109.47242 * 30.00480 * 3 2 1 6 6 H 1.48506 * 109.47013 * 150.00658 * 3 2 1 7 7 C 1.37879 * 120.00397 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00118 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99836 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.62868 * 299.61337 * 9 7 2 11 11 C 1.53251 * 109.63324 * 179.01516 * 9 7 2 12 12 N 1.46467 * 109.86018 * 178.29288 * 11 9 7 13 13 C 1.46900 * 110.99873 * 197.76913 * 12 11 9 14 14 C 1.53780 * 113.61480 * 166.97690 * 13 12 11 15 15 C 1.53780 * 87.17134 * 220.05696 * 14 13 12 16 16 C 1.53777 * 87.08175 * 25.39050 * 15 14 13 17 17 C 1.46469 * 112.55809 * 72.65836 * 12 11 9 18 18 C 1.53249 * 109.85865 * 287.34072 * 17 12 11 19 19 S 1.81895 * 108.50675 * 62.00564 * 18 17 12 20 20 H 0.96994 * 119.99978 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.40535 * 58.17478 * 11 9 7 22 22 H 1.08998 * 109.40192 * 298.41239 * 11 9 7 23 23 H 1.09005 * 112.90388 * 298.22059 * 13 12 11 24 24 H 1.09001 * 113.61898 * 105.46301 * 14 13 12 25 25 H 1.09000 * 113.61485 * 334.64435 * 14 13 12 26 26 H 1.09004 * 113.61504 * 139.93651 * 15 14 13 27 27 H 1.08997 * 113.61695 * 270.83914 * 15 14 13 28 28 H 1.08991 * 113.62127 * 89.11619 * 16 15 14 29 29 H 1.09007 * 113.61294 * 219.93663 * 16 15 14 30 30 H 1.08996 * 109.41006 * 47.45836 * 17 12 11 31 31 H 1.09000 * 109.40501 * 167.30296 * 17 12 11 32 32 H 1.09001 * 109.63022 * 181.71161 * 18 17 12 33 33 H 1.09007 * 109.63388 * 302.30150 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.6291 -2.5628 0.8923 11 6 2.2436 -3.6666 -0.0260 12 7 1.5174 -4.9380 0.0149 13 6 2.4054 -6.0389 0.4116 14 6 1.6577 -7.3307 0.7816 15 6 2.6699 -7.4982 1.9271 16 6 2.8534 -5.9721 1.8830 17 6 0.8400 -5.2390 -1.2483 18 6 -0.3765 -4.3227 -1.4180 19 16 0.2032 -2.5998 -1.4839 20 1 -0.4850 0.8400 0.0004 21 1 2.9045 -3.5991 0.8382 22 1 2.8369 -3.6176 -0.9390 23 1 3.2265 -6.1948 -0.2882 24 1 1.7265 -8.1083 0.0208 25 1 0.6363 -7.1616 1.1227 26 1 2.2242 -7.8577 2.8546 27 1 3.5634 -8.0539 1.6425 28 1 2.1593 -5.4300 2.5251 29 1 3.8875 -5.6527 2.0128 30 1 1.5308 -5.0809 -2.0764 31 1 0.5114 -6.2783 -1.2443 32 1 -0.8951 -4.5703 -2.3442 33 1 -1.0516 -4.4497 -0.5717 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260374970.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:01 Heat of formation + Delta-G solvation = 17.104553 kcal Electronic energy + Delta-G solvation = -14184.236006 eV Core-core repulsion = 11950.328285 eV Total energy + Delta-G solvation = -2233.907721 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.11554 -35.70358 -33.27003 -30.45022 -28.92747 -25.75869 -24.80455 -23.49914 -21.56919 -20.20965 -19.12122 -16.93420 -15.79660 -15.24474 -15.03147 -14.65452 -14.27613 -13.23370 -12.95917 -12.82825 -12.34876 -12.23215 -12.19590 -11.69729 -11.50260 -11.06307 -10.98160 -10.87184 -10.56984 -10.34516 -10.18634 -9.96088 -9.71145 -9.26636 -8.53964 -8.20667 -7.77436 -6.27049 -5.84260 -4.19757 3.17817 3.32377 3.34641 3.40023 4.25314 4.33893 4.45594 4.76548 4.87049 5.02799 5.09986 5.34402 5.55028 5.74164 5.76382 5.83223 5.95684 6.00060 6.01304 6.11310 6.18803 6.27428 6.31255 6.43044 6.57388 6.64699 6.79422 7.35052 7.64890 7.67622 7.81142 8.11037 8.74677 9.37642 10.89300 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.036328 B = 0.008302 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.576208 B = 3372.024309 C = 3935.578403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.071 3.929 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.502 4.502 8 H 0.067 0.933 9 C 0.123 3.877 10 H 0.048 0.952 11 C 0.069 3.931 12 N -0.540 5.540 13 C 0.058 3.942 14 C -0.128 4.128 15 C -0.142 4.142 16 C -0.127 4.127 17 C 0.067 3.933 18 C -0.099 4.099 19 S -0.305 6.305 20 H 0.265 0.735 21 H 0.070 0.930 22 H 0.031 0.969 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 -11.489 1.396 12.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.545 4.545 8 H 0.086 0.914 9 C -0.002 4.002 10 H 0.066 0.934 11 C -0.060 4.060 12 N -0.265 5.265 13 C -0.051 4.051 14 C -0.166 4.166 15 C -0.180 4.180 16 C -0.164 4.164 17 C -0.062 4.062 18 C -0.248 4.248 19 S -0.075 6.075 20 H 0.075 0.925 21 H 0.088 0.912 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.625 -10.582 0.941 10.943 hybrid contribution 1.199 -0.053 0.118 1.206 sum 3.824 -10.635 1.059 11.351 Atomic orbital electron populations 1.70065 1.05888 1.26985 1.44168 1.25125 0.94980 0.99650 0.94184 0.86485 0.79889 0.82749 0.78399 1.20330 1.20910 1.19577 1.20834 0.93062 0.89115 1.51523 0.91436 1.20739 0.93490 0.93779 0.92220 0.93401 1.22380 0.95913 0.87806 0.99878 1.61488 1.31078 1.02469 1.31454 1.23080 0.94482 0.91588 0.95952 1.22956 0.99404 0.96360 0.97895 1.22712 0.99327 0.96953 0.99008 1.22973 1.01243 0.95767 0.96465 1.22073 0.95658 0.98250 0.90268 1.23336 0.98975 0.99313 1.03178 1.87632 1.67188 1.09451 1.43252 0.92450 0.91210 0.95049 0.92594 0.92261 0.89362 0.91426 0.90673 0.89080 0.91936 0.94725 0.91853 0.90173 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.08 12.18 55.43 0.68 -23.40 16 2 C 0.07 1.94 5.28 -17.82 -0.09 1.85 16 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.50 -13.67 8.58 -34.44 -0.30 -13.97 16 8 H 0.07 1.78 7.75 -52.49 -0.41 1.38 16 9 C 0.12 3.15 2.67 -27.75 -0.07 3.07 16 10 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 11 C 0.07 1.48 4.59 -3.93 -0.02 1.46 16 12 N -0.54 -10.02 4.35 -225.98 -0.98 -11.00 16 13 C 0.06 0.87 3.19 -66.81 -0.21 0.66 16 14 C -0.13 -1.62 6.78 -25.92 -0.18 -1.80 16 15 C -0.14 -1.60 8.08 -25.92 -0.21 -1.81 16 16 C -0.13 -1.74 6.93 -25.83 -0.18 -1.91 16 17 C 0.07 1.20 5.34 -3.93 -0.02 1.18 16 18 C -0.10 -1.99 6.69 37.29 0.25 -1.74 16 19 S -0.31 -7.74 20.40 -107.50 -2.19 -9.93 16 20 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 21 H 0.07 1.44 7.22 -51.93 -0.37 1.06 16 22 H 0.03 0.69 7.91 -51.93 -0.41 0.28 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.03 0.64 7.91 -51.93 -0.41 0.23 16 31 H 0.06 0.98 7.11 -51.93 -0.37 0.61 16 32 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.07 1.46 8.14 -51.92 -0.42 1.04 16 LS Contribution 273.56 15.07 4.12 4.12 Total: -1.00 -28.69 273.56 -9.76 -38.46 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.34 Total: -1.14 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -1.03 Total: -13.01 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: -0.31 Total: -34.41 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -7.74 SS G_CDS: -2.19 Total: -9.93 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.69 -9.76 -38.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260374970.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.563 kcal (2) G-P(sol) polarization free energy of solvation -28.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds