Wall clock time and date at job start Mon Mar 30 2020 02:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99852 * 2 1 4 4 H 1.48499 * 109.47115 * 270.00217 * 3 2 1 5 5 H 1.48498 * 109.47242 * 30.00480 * 3 2 1 6 6 H 1.48506 * 109.47013 * 150.00658 * 3 2 1 7 7 C 1.37879 * 120.00397 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00118 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99836 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.62868 * 299.61337 * 9 7 2 11 11 C 1.53251 * 109.63324 * 179.01516 * 9 7 2 12 12 N 1.46467 * 109.86018 * 178.29288 * 11 9 7 13 13 C 1.46900 * 110.99873 * 197.76913 * 12 11 9 14 14 C 1.53780 * 113.61480 * 166.97690 * 13 12 11 15 15 C 1.53780 * 87.17134 * 220.05696 * 14 13 12 16 16 C 1.53777 * 87.08175 * 25.39050 * 15 14 13 17 17 C 1.46469 * 112.55809 * 72.65836 * 12 11 9 18 18 C 1.53249 * 109.85865 * 287.34072 * 17 12 11 19 19 S 1.81895 * 108.50675 * 62.00564 * 18 17 12 20 20 H 0.96994 * 119.99978 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.40535 * 58.17478 * 11 9 7 22 22 H 1.08998 * 109.40192 * 298.41239 * 11 9 7 23 23 H 1.09005 * 112.90388 * 298.22059 * 13 12 11 24 24 H 1.09001 * 113.61898 * 105.46301 * 14 13 12 25 25 H 1.09000 * 113.61485 * 334.64435 * 14 13 12 26 26 H 1.09004 * 113.61504 * 139.93651 * 15 14 13 27 27 H 1.08997 * 113.61695 * 270.83914 * 15 14 13 28 28 H 1.08991 * 113.62127 * 89.11619 * 16 15 14 29 29 H 1.09007 * 113.61294 * 219.93663 * 16 15 14 30 30 H 1.08996 * 109.41006 * 47.45836 * 17 12 11 31 31 H 1.09000 * 109.40501 * 167.30296 * 17 12 11 32 32 H 1.09001 * 109.63022 * 181.71161 * 18 17 12 33 33 H 1.09007 * 109.63388 * 302.30150 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.6291 -2.5628 0.8923 11 6 2.2436 -3.6666 -0.0260 12 7 1.5174 -4.9380 0.0149 13 6 2.4054 -6.0389 0.4116 14 6 1.6577 -7.3307 0.7816 15 6 2.6699 -7.4982 1.9271 16 6 2.8534 -5.9721 1.8830 17 6 0.8400 -5.2390 -1.2483 18 6 -0.3765 -4.3227 -1.4180 19 16 0.2032 -2.5998 -1.4839 20 1 -0.4850 0.8400 0.0004 21 1 2.9045 -3.5991 0.8382 22 1 2.8369 -3.6176 -0.9390 23 1 3.2265 -6.1948 -0.2882 24 1 1.7265 -8.1083 0.0208 25 1 0.6363 -7.1616 1.1227 26 1 2.2242 -7.8577 2.8546 27 1 3.5634 -8.0539 1.6425 28 1 2.1593 -5.4300 2.5251 29 1 3.8875 -5.6527 2.0128 30 1 1.5308 -5.0809 -2.0764 31 1 0.5114 -6.2783 -1.2443 32 1 -0.8951 -4.5703 -2.3442 33 1 -1.0516 -4.4497 -0.5717 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260374970.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:01 Heat of formation + Delta-G solvation = 0.092812 kcal Electronic energy + Delta-G solvation = -14184.973690 eV Core-core repulsion = 11950.328285 eV Total energy + Delta-G solvation = -2234.645406 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.33970 -37.12759 -35.25700 -32.24937 -30.57230 -27.20384 -26.26030 -24.78834 -23.29405 -21.85261 -20.22821 -18.83684 -17.47494 -16.67731 -16.61076 -16.20834 -15.92093 -14.79249 -14.58378 -14.48339 -14.10937 -13.87524 -13.26475 -13.15663 -12.97665 -12.81944 -12.72443 -12.41040 -11.99194 -11.90465 -11.57194 -11.35858 -11.25735 -10.99090 -10.55987 -10.12873 -9.25809 -8.33771 -7.88403 -6.35618 1.32290 1.40990 1.52299 1.57112 2.33756 2.44436 2.98316 3.24993 3.67168 3.83579 3.99390 4.04628 4.10524 4.26570 4.46145 4.51070 4.54977 4.68457 4.75488 4.87922 4.96034 4.96604 5.00539 5.07617 5.11640 5.32171 5.37293 5.55106 5.61303 5.93575 6.22736 6.31465 6.64688 7.26597 8.81877 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.036328 B = 0.008302 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.576208 B = 3372.024309 C = 3935.578403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.022 3.978 3 Si 0.966 3.034 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.526 4.526 8 H 0.070 0.930 9 C 0.131 3.869 10 H 0.008 0.992 11 C 0.086 3.914 12 N -0.550 5.550 13 C 0.046 3.954 14 C -0.121 4.121 15 C -0.125 4.125 16 C -0.133 4.133 17 C 0.072 3.928 18 C -0.080 4.080 19 S -0.369 6.369 20 H 0.265 0.735 21 H 0.073 0.927 22 H 0.022 0.978 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.030 0.970 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.416 -13.282 1.346 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.184 4.184 3 Si 0.789 3.211 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.183 1.183 7 C -0.568 4.568 8 H 0.088 0.912 9 C 0.005 3.995 10 H 0.026 0.974 11 C -0.043 4.043 12 N -0.275 5.275 13 C -0.062 4.062 14 C -0.158 4.158 15 C -0.163 4.163 16 C -0.171 4.171 17 C -0.058 4.058 18 C -0.228 4.228 19 S -0.140 6.140 20 H 0.074 0.926 21 H 0.091 0.909 22 H 0.040 0.960 23 H 0.081 0.919 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.603 -12.390 0.905 12.935 hybrid contribution 0.841 0.404 0.131 0.942 sum 4.444 -11.986 1.036 12.825 Atomic orbital electron populations 1.70207 1.07454 1.27718 1.45411 1.25952 0.95752 1.03138 0.93594 0.85438 0.78956 0.78334 0.78326 1.20282 1.20380 1.18338 1.21186 0.93400 0.90340 1.51916 0.91222 1.20539 0.93423 0.95330 0.90207 0.97420 1.22027 0.94694 0.88166 0.99445 1.61453 1.31803 1.02402 1.31822 1.23337 0.94794 0.91491 0.96582 1.22918 0.98963 0.95119 0.98841 1.22673 0.99667 0.94834 0.99083 1.22990 1.00951 0.97934 0.95253 1.22048 0.94448 0.99393 0.89875 1.23381 0.99972 0.95239 1.04253 1.87591 1.68141 1.15253 1.43032 0.92554 0.90887 0.95978 0.91940 0.90222 0.90265 0.90240 0.88681 0.91062 0.91492 0.95126 0.88208 0.87657 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.70 12.18 21.45 0.26 -51.44 16 2 C 0.02 1.24 5.28 84.66 0.45 1.69 16 3 Si 0.97 43.51 29.54 68.60 2.03 45.53 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.53 -29.37 8.58 25.60 0.22 -29.16 16 8 H 0.07 3.74 7.75 -2.91 -0.02 3.72 16 9 C 0.13 6.89 2.67 29.93 0.08 6.97 16 10 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 11 C 0.09 3.72 4.59 86.47 0.40 4.12 16 12 N -0.55 -19.82 4.35 -868.86 -3.78 -23.60 16 13 C 0.05 1.27 3.19 45.50 0.15 1.42 16 14 C -0.12 -2.63 6.78 31.12 0.21 -2.42 16 15 C -0.12 -2.38 8.08 31.12 0.25 -2.13 16 16 C -0.13 -3.42 6.93 31.18 0.22 -3.20 16 17 C 0.07 2.42 5.34 86.47 0.46 2.88 16 18 C -0.08 -3.11 6.69 72.07 0.48 -2.63 16 19 S -0.37 -19.08 20.40 -56.49 -1.15 -20.23 16 20 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 21 H 0.07 3.04 7.22 -2.39 -0.02 3.02 16 22 H 0.02 0.98 7.91 -2.39 -0.02 0.96 16 23 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 24 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 25 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 27 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 28 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.03 1.08 7.91 -2.39 -0.02 1.06 16 31 H 0.10 2.70 7.11 -2.39 -0.02 2.68 16 32 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 33 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 Total: -1.00 -63.44 273.56 1.33 -62.10 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.06 Total: 10.09 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 2.91 Total: -22.46 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -3.51 Total: -75.03 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -19.08 SS G_CDS: -1.15 Total: -20.23 kcal Total: -63.44 1.33 -62.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260374970.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.197 kcal (2) G-P(sol) polarization free energy of solvation -63.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds