Wall clock time and date at job start Mon Mar 30 2020 02:59:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86797 * 119.99744 * 2 1
4 4 H 1.48503 * 109.47311 * 179.97438 * 3 2 1
5 5 H 1.48507 * 109.47219 * 299.99765 * 3 2 1
6 6 H 1.48502 * 109.47274 * 60.00162 * 3 2 1
7 7 C 1.37875 * 120.00024 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00004 * 172.73796 * 7 2 1
9 9 C 1.50693 * 120.00322 * 352.73039 * 7 2 1
10 10 N 1.46900 * 109.38766 * 54.75227 * 9 7 2
11 11 C 1.46899 * 110.99880 * 54.82749 * 10 9 7
12 12 C 1.53004 * 117.49848 * 133.94969 * 11 10 9
13 13 C 1.52996 * 117.50161 * 202.60996 * 11 10 9
14 14 C 1.52581 * 109.39296 * 294.95546 * 9 7 2
15 15 C 1.52576 * 110.73008 * 169.27004 * 14 9 7
16 16 C 1.53102 * 109.95533 * 70.67858 * 15 14 9
17 17 S 1.81754 * 108.83653 * 296.97510 * 16 15 14
18 18 C 1.53092 * 109.31375 * 174.50732 * 9 7 2
19 19 H 0.96998 * 120.00536 * 5.01463 * 1 2 3
20 20 H 1.00904 * 110.99760 * 178.77480 * 10 9 7
21 21 H 1.09004 * 115.54986 * 348.28507 * 11 10 9
22 22 H 1.09007 * 117.49709 * 214.99823 * 12 11 10
23 23 H 1.08992 * 117.50046 * 0.02562 * 12 11 10
24 24 H 1.09004 * 117.50036 * 359.97438 * 13 11 10
25 25 H 1.08996 * 117.49965 * 144.97113 * 13 11 10
26 26 H 1.09003 * 109.22480 * 289.59750 * 14 9 7
27 27 H 1.09002 * 109.22810 * 48.94804 * 14 9 7
28 28 H 1.09000 * 109.39423 * 190.82324 * 15 14 9
29 29 H 1.09000 * 109.39207 * 310.62586 * 15 14 9
30 30 H 1.08995 * 109.58025 * 56.77982 * 16 15 14
31 31 H 1.08999 * 109.57844 * 177.04058 * 16 15 14
32 32 H 1.09000 * 109.57695 * 302.93473 * 18 9 7
33 33 H 1.09002 * 109.57623 * 63.31992 * 18 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3465 0.0006
5 1 1.8903 2.3965 -1.2126
6 1 1.8903 2.3965 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0781 -1.1977 -0.1188
9 6 1.2602 -2.4939 0.1640
10 7 0.2055 -2.5843 -0.8545
11 6 0.7605 -2.4115 -2.2037
12 6 0.3109 -3.3972 -3.2841
13 6 -0.1949 -1.9526 -3.3071
14 6 0.6292 -2.5442 1.5523
15 6 -0.3443 -3.7141 1.6611
16 6 0.4275 -5.0362 1.6778
17 16 1.3091 -5.2211 0.0992
18 6 2.2355 -3.6613 -0.0092
19 1 -0.4851 0.8368 -0.0734
20 1 -0.2963 -3.4564 -0.7790
21 1 1.7887 -2.0522 -2.2466
22 1 1.0433 -3.6863 -4.0379
23 1 -0.3969 -4.1736 -2.9939
24 1 -1.2353 -1.7793 -3.0321
25 1 0.2046 -1.2911 -4.0757
26 1 1.4144 -2.6599 2.2995
27 1 0.0934 -1.6131 1.7370
28 1 -0.9214 -3.6204 2.5810
29 1 -1.0209 -3.7025 0.8066
30 1 1.1451 -5.0299 2.4982
31 1 -0.2692 -5.8642 1.8084
32 1 2.7198 -3.5911 -0.9831
33 1 2.9883 -3.6281 0.7784
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260417559.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:59:44
Heat of formation + Delta-G solvation = 16.699323 kcal
Electronic energy + Delta-G solvation = -14855.064804 eV
Core-core repulsion = 12621.139511 eV
Total energy + Delta-G solvation = -2233.925293 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 227.104 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.55842 -36.97516 -34.38727 -32.82685 -29.59089 -27.84845 -26.95474 -23.13693
-22.92993 -21.75033 -20.64215 -18.25319 -17.15042 -16.72738 -16.39037 -15.88488
-15.54630 -14.76623 -14.65255 -14.16015 -13.87189 -13.70404 -13.35659 -12.88999
-12.69846 -12.47056 -12.21058 -12.10741 -12.06250 -11.93542 -11.66847 -11.34302
-10.79134 -10.67345 -10.37034 -10.31285 -8.53001 -8.32971 -7.78792 -6.04243
1.01882 1.41220 1.47566 1.53260 1.74090 2.52171 3.27211 3.39794
3.79062 4.06277 4.16864 4.29114 4.37428 4.39590 4.50076 4.55537
4.78431 4.81317 4.86973 4.91746 4.95349 5.02209 5.15402 5.39998
5.46840 5.48150 5.66012 5.81175 5.95726 6.33755 6.73708 7.06768
7.45194 7.63759 9.13024
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.025432 B = 0.012921 C = 0.010243
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1100.701838 B = 2166.548213 C = 2732.932334
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.844 5.844
2 C 0.057 3.943
3 Si 0.922 3.078
4 H -0.276 1.276
5 H -0.289 1.289
6 H -0.286 1.286
7 C -0.542 4.542
8 H 0.041 0.959
9 C 0.247 3.753
10 N -0.613 5.613
11 C 0.064 3.936
12 C -0.204 4.204
13 C -0.183 4.183
14 C -0.098 4.098
15 C -0.117 4.117
16 C -0.066 4.066
17 S -0.305 6.305
18 C -0.085 4.085
19 H 0.250 0.750
20 H 0.317 0.683
21 H 0.084 0.916
22 H 0.093 0.907
23 H 0.089 0.911
24 H 0.076 0.924
25 H 0.083 0.917
26 H 0.035 0.965
27 H 0.059 0.941
28 H 0.076 0.924
29 H 0.066 0.934
30 H 0.084 0.916
31 H 0.119 0.881
32 H 0.080 0.920
33 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.200 -7.269 0.507 7.290
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.478 5.478
2 C -0.149 4.149
3 Si 0.750 3.250
4 H -0.201 1.201
5 H -0.215 1.215
6 H -0.212 1.212
7 C -0.582 4.582
8 H 0.059 0.941
9 C 0.155 3.845
10 N -0.243 5.243
11 C -0.048 4.048
12 C -0.243 4.243
13 C -0.221 4.221
14 C -0.137 4.137
15 C -0.156 4.156
16 C -0.214 4.214
17 S -0.078 6.078
18 C -0.235 4.235
19 H 0.059 0.941
20 H 0.140 0.860
21 H 0.102 0.898
22 H 0.112 0.888
23 H 0.108 0.892
24 H 0.095 0.905
25 H 0.102 0.898
26 H 0.054 0.946
27 H 0.077 0.923
28 H 0.094 0.906
29 H 0.084 0.916
30 H 0.103 0.897
31 H 0.137 0.863
32 H 0.098 0.902
33 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -0.600 -7.401 -0.039 7.426
hybrid contribution 1.059 1.486 0.525 1.898
sum 0.459 -5.916 0.486 5.953
Atomic orbital electron populations
1.70241 1.05998 1.25398 1.46207 1.25300 0.95135 1.00057 0.94384
0.86103 0.79419 0.82417 0.77063 1.20066 1.21534 1.21209 1.20960
0.92408 0.91005 1.53865 0.94058 1.18488 0.86482 0.90098 0.89469
1.60412 1.26457 1.37281 1.00148 1.21910 0.96244 1.00492 0.86184
1.23414 1.04291 0.92521 1.04053 1.22884 0.99972 0.96743 1.02542
1.21342 0.97256 0.98213 0.96878 1.21699 0.98386 0.92987 1.02504
1.23463 1.01232 1.01604 0.95088 1.86348 1.60233 1.28536 1.32722
1.24429 1.01075 0.94266 1.03748 0.94081 0.86041 0.89791 0.88834
0.89238 0.90522 0.89806 0.94584 0.92276 0.90598 0.91572 0.89740
0.86294 0.90153 0.91548
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.84 -45.17 11.12 21.45 0.24 -44.94 16
2 C 0.06 2.97 5.04 84.65 0.43 3.40 16
3 Si 0.92 42.07 29.55 68.60 2.03 44.10 16
4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16
5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16
6 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16
7 C -0.54 -27.54 6.39 25.60 0.16 -27.38 16
8 H 0.04 2.15 7.75 -2.91 -0.02 2.13 16
9 C 0.25 10.97 0.28 2.67 0.00 10.97 16
10 N -0.61 -27.02 4.85 -452.51 -2.20 -29.22 16
11 C 0.06 2.70 4.83 44.92 0.22 2.91 16
12 C -0.20 -7.13 10.23 30.62 0.31 -6.81 16
13 C -0.18 -7.10 10.46 30.62 0.32 -6.78 16
14 C -0.10 -4.18 4.62 30.31 0.14 -4.04 16
15 C -0.12 -3.99 5.58 30.49 0.17 -3.82 16
16 C -0.07 -1.94 6.46 72.02 0.46 -1.47 16
17 S -0.31 -10.44 20.95 -56.49 -1.18 -11.63 16
18 C -0.08 -3.38 4.98 72.01 0.36 -3.02 16
19 H 0.25 13.11 8.32 -92.71 -0.77 12.34 16
20 H 0.32 13.26 5.02 -89.69 -0.45 12.81 16
21 H 0.08 3.92 6.48 -2.39 -0.02 3.90 16
22 H 0.09 2.94 8.14 -2.38 -0.02 2.92 16
23 H 0.09 3.03 8.07 -2.39 -0.02 3.01 16
24 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16
25 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16
26 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16
27 H 0.06 2.91 6.55 -2.39 -0.02 2.90 16
28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16
29 H 0.07 2.44 6.12 -2.39 -0.01 2.42 16
30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16
31 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16
32 H 0.08 3.32 7.16 -2.39 -0.02 3.30 16
33 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16
Total: -1.00 -53.08 267.19 2.10 -50.98
By element:
Atomic # 1 Polarization: 26.10 SS G_CDS: 0.64 Total: 26.74 kcal
Atomic # 6 Polarization: -38.62 SS G_CDS: 2.58 Total: -36.04 kcal
Atomic # 7 Polarization: -72.20 SS G_CDS: -1.96 Total: -74.16 kcal
Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal
Atomic # 16 Polarization: -10.44 SS G_CDS: -1.18 Total: -11.63 kcal
Total: -53.08 2.10 -50.98 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260417559.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.678 kcal
(2) G-P(sol) polarization free energy of solvation -53.079 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.599 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.979 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.699 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds