Wall clock time and date at job start Mon Mar 30 2020 02:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99744 * 2 1 4 4 H 1.48503 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47219 * 299.99765 * 3 2 1 6 6 H 1.48502 * 109.47274 * 60.00162 * 3 2 1 7 7 C 1.37875 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00004 * 172.73796 * 7 2 1 9 9 C 1.50693 * 120.00322 * 352.73039 * 7 2 1 10 10 N 1.46900 * 109.38766 * 54.75227 * 9 7 2 11 11 C 1.46899 * 110.99880 * 54.82749 * 10 9 7 12 12 C 1.53004 * 117.49848 * 133.94969 * 11 10 9 13 13 C 1.52996 * 117.50161 * 202.60996 * 11 10 9 14 14 C 1.52581 * 109.39296 * 294.95546 * 9 7 2 15 15 C 1.52576 * 110.73008 * 169.27004 * 14 9 7 16 16 C 1.53102 * 109.95533 * 70.67858 * 15 14 9 17 17 S 1.81754 * 108.83653 * 296.97510 * 16 15 14 18 18 C 1.53092 * 109.31375 * 174.50732 * 9 7 2 19 19 H 0.96998 * 120.00536 * 5.01463 * 1 2 3 20 20 H 1.00904 * 110.99760 * 178.77480 * 10 9 7 21 21 H 1.09004 * 115.54986 * 348.28507 * 11 10 9 22 22 H 1.09007 * 117.49709 * 214.99823 * 12 11 10 23 23 H 1.08992 * 117.50046 * 0.02562 * 12 11 10 24 24 H 1.09004 * 117.50036 * 359.97438 * 13 11 10 25 25 H 1.08996 * 117.49965 * 144.97113 * 13 11 10 26 26 H 1.09003 * 109.22480 * 289.59750 * 14 9 7 27 27 H 1.09002 * 109.22810 * 48.94804 * 14 9 7 28 28 H 1.09000 * 109.39423 * 190.82324 * 15 14 9 29 29 H 1.09000 * 109.39207 * 310.62586 * 15 14 9 30 30 H 1.08995 * 109.58025 * 56.77982 * 16 15 14 31 31 H 1.08999 * 109.57844 * 177.04058 * 16 15 14 32 32 H 1.09000 * 109.57695 * 302.93473 * 18 9 7 33 33 H 1.09002 * 109.57623 * 63.31992 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0781 -1.1977 -0.1188 9 6 1.2602 -2.4939 0.1640 10 7 0.2055 -2.5843 -0.8545 11 6 0.7605 -2.4115 -2.2037 12 6 0.3109 -3.3972 -3.2841 13 6 -0.1949 -1.9526 -3.3071 14 6 0.6292 -2.5442 1.5523 15 6 -0.3443 -3.7141 1.6611 16 6 0.4275 -5.0362 1.6778 17 16 1.3091 -5.2211 0.0992 18 6 2.2355 -3.6613 -0.0092 19 1 -0.4851 0.8368 -0.0734 20 1 -0.2963 -3.4564 -0.7790 21 1 1.7887 -2.0522 -2.2466 22 1 1.0433 -3.6863 -4.0379 23 1 -0.3969 -4.1736 -2.9939 24 1 -1.2353 -1.7793 -3.0321 25 1 0.2046 -1.2911 -4.0757 26 1 1.4144 -2.6599 2.2995 27 1 0.0934 -1.6131 1.7370 28 1 -0.9214 -3.6204 2.5810 29 1 -1.0209 -3.7025 0.8066 30 1 1.1451 -5.0299 2.4982 31 1 -0.2692 -5.8642 1.8084 32 1 2.7198 -3.5911 -0.9831 33 1 2.9883 -3.6281 0.7784 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260417559.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:44 Heat of formation + Delta-G solvation = 16.699323 kcal Electronic energy + Delta-G solvation = -14855.064804 eV Core-core repulsion = 12621.139511 eV Total energy + Delta-G solvation = -2233.925293 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.55842 -36.97516 -34.38727 -32.82685 -29.59089 -27.84845 -26.95474 -23.13693 -22.92993 -21.75033 -20.64215 -18.25319 -17.15042 -16.72738 -16.39037 -15.88488 -15.54630 -14.76623 -14.65255 -14.16015 -13.87189 -13.70404 -13.35659 -12.88999 -12.69846 -12.47056 -12.21058 -12.10741 -12.06250 -11.93542 -11.66847 -11.34302 -10.79134 -10.67345 -10.37034 -10.31285 -8.53001 -8.32971 -7.78792 -6.04243 1.01882 1.41220 1.47566 1.53260 1.74090 2.52171 3.27211 3.39794 3.79062 4.06277 4.16864 4.29114 4.37428 4.39590 4.50076 4.55537 4.78431 4.81317 4.86973 4.91746 4.95349 5.02209 5.15402 5.39998 5.46840 5.48150 5.66012 5.81175 5.95726 6.33755 6.73708 7.06768 7.45194 7.63759 9.13024 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.025432 B = 0.012921 C = 0.010243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.701838 B = 2166.548213 C = 2732.932334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.057 3.943 3 Si 0.922 3.078 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.542 4.542 8 H 0.041 0.959 9 C 0.247 3.753 10 N -0.613 5.613 11 C 0.064 3.936 12 C -0.204 4.204 13 C -0.183 4.183 14 C -0.098 4.098 15 C -0.117 4.117 16 C -0.066 4.066 17 S -0.305 6.305 18 C -0.085 4.085 19 H 0.250 0.750 20 H 0.317 0.683 21 H 0.084 0.916 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.035 0.965 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.200 -7.269 0.507 7.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.149 4.149 3 Si 0.750 3.250 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.582 4.582 8 H 0.059 0.941 9 C 0.155 3.845 10 N -0.243 5.243 11 C -0.048 4.048 12 C -0.243 4.243 13 C -0.221 4.221 14 C -0.137 4.137 15 C -0.156 4.156 16 C -0.214 4.214 17 S -0.078 6.078 18 C -0.235 4.235 19 H 0.059 0.941 20 H 0.140 0.860 21 H 0.102 0.898 22 H 0.112 0.888 23 H 0.108 0.892 24 H 0.095 0.905 25 H 0.102 0.898 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.137 0.863 32 H 0.098 0.902 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.600 -7.401 -0.039 7.426 hybrid contribution 1.059 1.486 0.525 1.898 sum 0.459 -5.916 0.486 5.953 Atomic orbital electron populations 1.70241 1.05998 1.25398 1.46207 1.25300 0.95135 1.00057 0.94384 0.86103 0.79419 0.82417 0.77063 1.20066 1.21534 1.21209 1.20960 0.92408 0.91005 1.53865 0.94058 1.18488 0.86482 0.90098 0.89469 1.60412 1.26457 1.37281 1.00148 1.21910 0.96244 1.00492 0.86184 1.23414 1.04291 0.92521 1.04053 1.22884 0.99972 0.96743 1.02542 1.21342 0.97256 0.98213 0.96878 1.21699 0.98386 0.92987 1.02504 1.23463 1.01232 1.01604 0.95088 1.86348 1.60233 1.28536 1.32722 1.24429 1.01075 0.94266 1.03748 0.94081 0.86041 0.89791 0.88834 0.89238 0.90522 0.89806 0.94584 0.92276 0.90598 0.91572 0.89740 0.86294 0.90153 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.17 11.12 21.45 0.24 -44.94 16 2 C 0.06 2.97 5.04 84.65 0.43 3.40 16 3 Si 0.92 42.07 29.55 68.60 2.03 44.10 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 7 C -0.54 -27.54 6.39 25.60 0.16 -27.38 16 8 H 0.04 2.15 7.75 -2.91 -0.02 2.13 16 9 C 0.25 10.97 0.28 2.67 0.00 10.97 16 10 N -0.61 -27.02 4.85 -452.51 -2.20 -29.22 16 11 C 0.06 2.70 4.83 44.92 0.22 2.91 16 12 C -0.20 -7.13 10.23 30.62 0.31 -6.81 16 13 C -0.18 -7.10 10.46 30.62 0.32 -6.78 16 14 C -0.10 -4.18 4.62 30.31 0.14 -4.04 16 15 C -0.12 -3.99 5.58 30.49 0.17 -3.82 16 16 C -0.07 -1.94 6.46 72.02 0.46 -1.47 16 17 S -0.31 -10.44 20.95 -56.49 -1.18 -11.63 16 18 C -0.08 -3.38 4.98 72.01 0.36 -3.02 16 19 H 0.25 13.11 8.32 -92.71 -0.77 12.34 16 20 H 0.32 13.26 5.02 -89.69 -0.45 12.81 16 21 H 0.08 3.92 6.48 -2.39 -0.02 3.90 16 22 H 0.09 2.94 8.14 -2.38 -0.02 2.92 16 23 H 0.09 3.03 8.07 -2.39 -0.02 3.01 16 24 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 25 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 26 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16 27 H 0.06 2.91 6.55 -2.39 -0.02 2.90 16 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.07 2.44 6.12 -2.39 -0.01 2.42 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.08 3.32 7.16 -2.39 -0.02 3.30 16 33 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -53.08 267.19 2.10 -50.98 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.64 Total: 26.74 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: 2.58 Total: -36.04 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -1.96 Total: -74.16 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: -10.44 SS G_CDS: -1.18 Total: -11.63 kcal Total: -53.08 2.10 -50.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260417559.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.678 kcal (2) G-P(sol) polarization free energy of solvation -53.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds