Wall clock time and date at job start Mon Mar 30 2020 03:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.45501 * 111.15512 * 2 1 4 4 C 1.52713 * 110.38804 * 186.35755 * 3 2 1 5 5 H 1.08999 * 108.88504 * 184.31104 * 4 3 2 6 6 C 1.52976 * 109.34311 * 65.45412 * 4 3 2 7 7 S 1.81743 * 108.90672 * 300.83400 * 6 4 3 8 8 C 1.81743 * 102.14382 * 306.42372 * 7 6 4 9 9 C 1.52975 * 108.89384 * 53.58345 * 8 7 6 10 10 H 1.09005 * 108.88642 * 177.99513 * 9 8 7 11 11 C 1.46885 * 111.00536 * 124.06087 * 2 1 3 12 12 C 1.52413 * 110.43801 * 303.82145 * 4 3 2 13 13 C 1.50704 * 109.08336 * 291.30217 * 12 4 3 14 14 H 1.07997 * 120.00570 * 6.42988 * 13 12 4 15 15 C 1.37878 * 119.99834 * 186.43267 * 13 12 4 16 16 N 1.31520 * 120.00126 * 9.56929 * 15 13 12 17 17 Si 1.86806 * 120.00104 * 189.57047 * 15 13 12 18 18 H 1.48497 * 109.46960 * 94.98979 * 17 15 13 19 19 H 1.48497 * 109.46834 * 214.99441 * 17 15 13 20 20 H 1.48499 * 109.46535 * 334.99297 * 17 15 13 21 21 H 1.08997 * 109.47051 * 295.93850 * 1 2 3 22 22 H 1.08991 * 109.47173 * 55.94126 * 1 2 3 23 23 H 1.09003 * 109.46600 * 175.94112 * 1 2 3 24 24 H 1.09000 * 108.41723 * 66.48276 * 3 2 1 25 25 H 1.08999 * 109.69933 * 307.04663 * 3 2 1 26 26 H 1.08999 * 109.55969 * 60.65679 * 6 4 3 27 27 H 1.08993 * 109.56762 * 181.00390 * 6 4 3 28 28 H 1.09000 * 109.56818 * 173.40732 * 8 7 6 29 29 H 1.08996 * 109.56868 * 293.64067 * 8 7 6 30 30 H 1.09001 * 109.44372 * 53.21905 * 11 2 1 31 31 H 1.09005 * 109.44033 * 293.33748 * 11 2 1 32 32 H 1.08998 * 109.08909 * 172.24493 * 12 4 3 33 33 H 0.97001 * 119.99863 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9941 1.3570 0.0000 4 6 3.5129 1.3397 -0.1585 5 1 3.8876 2.3601 -0.0784 6 6 3.8720 0.7873 -1.5391 7 16 3.1966 -0.8927 -1.6951 8 6 3.8725 -1.7148 -0.2219 9 6 3.5130 -0.8892 1.0148 10 1 3.8875 -1.4007 1.9016 11 6 1.9955 -0.7680 1.1360 12 6 4.1525 0.4920 0.9348 13 6 3.9843 1.1889 2.2604 14 1 3.3844 2.0844 2.3275 15 6 4.5962 0.6831 3.3877 16 7 5.4739 -0.2904 3.2788 17 14 4.1788 1.3804 5.0696 18 1 3.1228 0.5495 5.7018 19 1 5.3932 1.3721 5.9242 20 1 3.6885 2.7741 4.9197 21 1 -0.3633 0.4495 0.9241 22 1 -0.3633 0.5755 -0.8513 23 1 -0.3632 -1.0251 -0.0727 24 1 1.7335 1.8270 0.9483 25 1 1.5501 1.9227 -0.8191 26 1 3.4427 1.4264 -2.3108 27 1 4.9559 0.7567 -1.6494 28 1 3.4437 -2.7129 -0.1317 29 1 4.9562 -1.7898 -0.3105 30 1 1.5510 -1.7633 1.1383 31 1 1.7454 -0.2575 2.0661 32 1 5.2159 0.3807 0.7233 33 1 5.9041 -0.6464 4.0719 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260576797.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:57 Heat of formation + Delta-G solvation = 5.635361 kcal Electronic energy + Delta-G solvation = -15093.951438 eV Core-core repulsion = 12859.546375 eV Total energy + Delta-G solvation = -2234.405063 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.96145 -34.16009 -32.40007 -31.81845 -27.48376 -26.36797 -25.74557 -23.33410 -21.66964 -20.90409 -17.75538 -16.36301 -15.82454 -14.82446 -14.35750 -14.11649 -13.69090 -13.44143 -13.27122 -12.58015 -12.41035 -12.10294 -11.95100 -11.65106 -11.17073 -11.05019 -10.86966 -10.67497 -10.56400 -10.23643 -10.04820 -9.40744 -9.29415 -8.84734 -8.62674 -8.34995 -7.87586 -6.12034 -5.78143 -4.12267 2.80663 3.23587 3.32022 3.34357 3.50716 4.36317 4.81366 5.20645 5.54539 5.71605 5.74290 5.89959 5.94012 6.04828 6.06707 6.10111 6.28489 6.33518 6.35911 6.45479 6.55017 6.64206 6.73675 6.86415 6.95631 7.28242 7.54587 7.69141 7.86356 8.00527 8.05587 8.32719 8.89966 9.50847 10.97475 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.033331 B = 0.011592 C = 0.010515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.854203 B = 2414.920745 C = 2662.281930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.507 5.507 3 C 0.076 3.924 4 C -0.080 4.080 5 H 0.067 0.933 6 C -0.067 4.067 7 S -0.248 6.248 8 C -0.064 4.064 9 C -0.075 4.075 10 H 0.094 0.906 11 C 0.075 3.925 12 C 0.052 3.948 13 C -0.510 4.510 14 H 0.055 0.945 15 C 0.065 3.935 16 N -0.886 5.886 17 Si 0.883 3.117 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.275 1.275 21 H 0.010 0.990 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.031 0.969 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.314 -0.213 -5.835 7.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.231 5.231 3 C -0.053 4.053 4 C -0.100 4.100 5 H 0.086 0.914 6 C -0.216 4.216 7 S -0.020 6.020 8 C -0.212 4.212 9 C -0.096 4.096 10 H 0.112 0.888 11 C -0.053 4.053 12 C 0.033 3.967 13 C -0.548 4.548 14 H 0.073 0.927 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.711 3.289 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.028 0.972 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.667 -0.986 -6.980 9.045 hybrid contribution 0.318 1.228 2.815 3.088 sum -5.349 0.242 -4.165 6.784 Atomic orbital electron populations 1.22287 0.89929 1.00920 0.98948 1.62678 1.04839 1.13250 1.42381 1.21582 0.95143 0.89629 0.98943 1.21209 0.94997 1.00234 0.93594 0.91433 1.23365 1.01745 0.95813 1.00673 1.85793 1.73139 1.10236 1.32864 1.23431 1.01660 1.00129 0.95994 1.21127 0.93696 0.98607 0.96168 0.88849 1.21914 0.95888 0.96277 0.91268 1.18475 0.95301 0.90269 0.92631 1.21102 1.30574 1.10685 0.92475 0.92718 1.24929 0.94458 0.95308 0.98947 1.69951 1.25981 1.27307 1.29198 0.86709 0.78018 0.79478 0.84658 1.20726 1.21242 1.19936 0.97199 0.92534 0.92363 0.95129 0.92869 0.89964 0.91372 0.90237 0.91307 0.93117 0.94491 0.94784 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.58 60.06 0.58 1.03 16 2 N -0.51 -9.51 2.21 -244.49 -0.54 -10.05 16 3 C 0.08 1.45 4.52 -4.73 -0.02 1.43 16 4 C -0.08 -1.62 2.40 -91.08 -0.22 -1.84 16 5 H 0.07 1.37 8.09 -51.93 -0.42 0.95 16 6 C -0.07 -1.23 5.98 37.15 0.22 -1.01 16 7 S -0.25 -4.66 19.55 -107.50 -2.10 -6.76 16 8 C -0.06 -1.26 5.99 37.14 0.22 -1.04 16 9 C -0.08 -1.67 2.34 -91.08 -0.21 -1.88 16 10 H 0.09 2.34 6.54 -51.93 -0.34 2.00 16 11 C 0.07 1.53 4.63 -3.98 -0.02 1.51 16 12 C 0.05 1.22 1.44 -92.37 -0.13 1.09 16 13 C -0.51 -13.24 7.14 -34.44 -0.25 -13.49 16 14 H 0.05 1.43 7.10 -52.49 -0.37 1.06 16 15 C 0.07 1.74 5.08 -17.82 -0.09 1.65 16 16 N -0.89 -24.42 12.06 55.43 0.67 -23.75 16 17 Si 0.88 20.72 29.55 -169.99 -5.02 15.70 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 21 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 22 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.03 0.63 7.16 -51.93 -0.37 0.26 16 25 H 0.05 0.92 8.06 -51.93 -0.42 0.50 16 26 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.05 0.97 8.11 -51.93 -0.42 0.55 16 31 H 0.04 0.83 7.58 -51.93 -0.39 0.44 16 32 H 0.03 0.90 8.04 -51.93 -0.42 0.49 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 259.75 15.07 3.91 3.91 Total: -1.00 -26.65 259.75 -8.25 -34.90 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -5.25 Total: -1.40 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.13 Total: -33.80 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -4.66 SS G_CDS: -2.10 Total: -6.76 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -26.65 -8.25 -34.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260576797.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.539 kcal (2) G-P(sol) polarization free energy of solvation -26.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds