Wall clock time and date at job start Mon Mar 30 2020 03:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.45501 * 111.15512 * 2 1 4 4 C 1.52713 * 110.38804 * 186.35755 * 3 2 1 5 5 H 1.08999 * 108.88504 * 184.31104 * 4 3 2 6 6 C 1.52976 * 109.34311 * 65.45412 * 4 3 2 7 7 S 1.81743 * 108.90672 * 300.83400 * 6 4 3 8 8 C 1.81743 * 102.14382 * 306.42372 * 7 6 4 9 9 C 1.52975 * 108.89384 * 53.58345 * 8 7 6 10 10 H 1.09005 * 108.88642 * 177.99513 * 9 8 7 11 11 C 1.46885 * 111.00536 * 124.06087 * 2 1 3 12 12 C 1.52413 * 110.43801 * 303.82145 * 4 3 2 13 13 C 1.50704 * 109.08336 * 291.30217 * 12 4 3 14 14 H 1.07997 * 120.00570 * 6.42988 * 13 12 4 15 15 C 1.37878 * 119.99834 * 186.43267 * 13 12 4 16 16 N 1.31520 * 120.00126 * 9.56929 * 15 13 12 17 17 Si 1.86806 * 120.00104 * 189.57047 * 15 13 12 18 18 H 1.48497 * 109.46960 * 94.98979 * 17 15 13 19 19 H 1.48497 * 109.46834 * 214.99441 * 17 15 13 20 20 H 1.48499 * 109.46535 * 334.99297 * 17 15 13 21 21 H 1.08997 * 109.47051 * 295.93850 * 1 2 3 22 22 H 1.08991 * 109.47173 * 55.94126 * 1 2 3 23 23 H 1.09003 * 109.46600 * 175.94112 * 1 2 3 24 24 H 1.09000 * 108.41723 * 66.48276 * 3 2 1 25 25 H 1.08999 * 109.69933 * 307.04663 * 3 2 1 26 26 H 1.08999 * 109.55969 * 60.65679 * 6 4 3 27 27 H 1.08993 * 109.56762 * 181.00390 * 6 4 3 28 28 H 1.09000 * 109.56818 * 173.40732 * 8 7 6 29 29 H 1.08996 * 109.56868 * 293.64067 * 8 7 6 30 30 H 1.09001 * 109.44372 * 53.21905 * 11 2 1 31 31 H 1.09005 * 109.44033 * 293.33748 * 11 2 1 32 32 H 1.08998 * 109.08909 * 172.24493 * 12 4 3 33 33 H 0.97001 * 119.99863 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9941 1.3570 0.0000 4 6 3.5129 1.3397 -0.1585 5 1 3.8876 2.3601 -0.0784 6 6 3.8720 0.7873 -1.5391 7 16 3.1966 -0.8927 -1.6951 8 6 3.8725 -1.7148 -0.2219 9 6 3.5130 -0.8892 1.0148 10 1 3.8875 -1.4007 1.9016 11 6 1.9955 -0.7680 1.1360 12 6 4.1525 0.4920 0.9348 13 6 3.9843 1.1889 2.2604 14 1 3.3844 2.0844 2.3275 15 6 4.5962 0.6831 3.3877 16 7 5.4739 -0.2904 3.2788 17 14 4.1788 1.3804 5.0696 18 1 3.1228 0.5495 5.7018 19 1 5.3932 1.3721 5.9242 20 1 3.6885 2.7741 4.9197 21 1 -0.3633 0.4495 0.9241 22 1 -0.3633 0.5755 -0.8513 23 1 -0.3632 -1.0251 -0.0727 24 1 1.7335 1.8270 0.9483 25 1 1.5501 1.9227 -0.8191 26 1 3.4427 1.4264 -2.3108 27 1 4.9559 0.7567 -1.6494 28 1 3.4437 -2.7129 -0.1317 29 1 4.9562 -1.7898 -0.3105 30 1 1.5510 -1.7633 1.1383 31 1 1.7454 -0.2575 2.0661 32 1 5.2159 0.3807 0.7233 33 1 5.9041 -0.6464 4.0719 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260576797.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:57 Heat of formation + Delta-G solvation = -8.184853 kcal Electronic energy + Delta-G solvation = -15094.550727 eV Core-core repulsion = 12859.546375 eV Total energy + Delta-G solvation = -2235.004352 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.60814 -35.83551 -34.15354 -33.60112 -29.31056 -27.81768 -27.31292 -25.19317 -23.25130 -22.55050 -19.52328 -18.10632 -17.61429 -16.64459 -15.97868 -15.61370 -15.25480 -15.10294 -15.02037 -14.09862 -14.02476 -13.85187 -13.45125 -13.38537 -12.87165 -12.76340 -12.47598 -12.34418 -12.18353 -11.93847 -11.80707 -11.16788 -11.14014 -10.58938 -10.48787 -10.14996 -9.41648 -8.16296 -7.29802 -6.22192 1.28503 1.34839 1.38139 1.46015 1.95269 2.39134 3.14322 3.31999 3.99537 4.16024 4.19961 4.26348 4.45140 4.57534 4.60223 4.70624 4.74286 4.78907 4.88702 4.91878 5.00899 5.13034 5.15620 5.19875 5.26836 5.50087 5.57936 5.81401 5.94924 6.32213 6.42793 6.54708 6.86944 7.43359 8.92123 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.033331 B = 0.011592 C = 0.010515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.854203 B = 2414.920745 C = 2662.281930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.508 5.508 3 C 0.081 3.919 4 C -0.081 4.081 5 H 0.064 0.936 6 C -0.066 4.066 7 S -0.223 6.223 8 C -0.065 4.065 9 C -0.072 4.072 10 H 0.057 0.943 11 C 0.083 3.917 12 C 0.053 3.947 13 C -0.518 4.518 14 H 0.048 0.952 15 C 0.021 3.979 16 N -0.914 5.914 17 Si 0.939 3.061 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.270 1.270 21 H 0.009 0.991 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.010 0.990 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.011 0.989 32 H -0.006 1.006 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.916 0.114 -6.998 9.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.232 5.232 3 C -0.048 4.048 4 C -0.101 4.101 5 H 0.082 0.918 6 C -0.215 4.215 7 S 0.005 5.995 8 C -0.213 4.213 9 C -0.093 4.093 10 H 0.075 0.925 11 C -0.045 4.045 12 C 0.035 3.965 13 C -0.556 4.556 14 H 0.066 0.934 15 C -0.178 4.178 16 N -0.553 5.553 17 Si 0.765 3.235 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.195 1.195 21 H 0.027 0.973 22 H 0.096 0.904 23 H 0.089 0.911 24 H 0.028 0.972 25 H 0.100 0.900 26 H 0.130 0.870 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.029 0.971 32 H 0.012 0.988 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.283 -0.653 -8.151 10.950 hybrid contribution 0.821 1.148 3.150 3.452 sum -6.462 0.495 -5.000 8.186 Atomic orbital electron populations 1.22372 0.87634 1.02235 0.99804 1.62668 1.06882 1.12727 1.40910 1.21551 0.94184 0.90052 0.99016 1.21131 0.95901 0.99374 0.93670 0.91798 1.23380 1.01980 0.96109 1.00011 1.85659 1.72739 1.10024 1.31078 1.23326 1.01281 1.00837 0.95895 1.20940 0.94842 0.97611 0.95867 0.92515 1.21749 0.94684 0.97139 0.90933 1.18392 0.93451 0.91732 0.92972 1.21368 1.29917 1.10473 0.93851 0.93362 1.25579 0.94475 0.95761 1.02014 1.70065 1.26932 1.28518 1.29816 0.85832 0.77697 0.78950 0.80982 1.20411 1.21127 1.19486 0.97278 0.90439 0.91086 0.97172 0.89993 0.87031 0.91615 0.88701 0.92474 0.91592 0.97110 0.98772 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.58 127.69 1.22 2.03 16 2 N -0.51 -17.83 2.21 -927.42 -2.05 -19.88 16 3 C 0.08 2.92 4.52 86.47 0.39 3.31 16 4 C -0.08 -3.19 2.40 -11.09 -0.03 -3.21 16 5 H 0.06 2.55 8.09 -2.39 -0.02 2.53 16 6 C -0.07 -2.28 5.98 71.97 0.43 -1.85 16 7 S -0.22 -7.81 19.55 -56.49 -1.10 -8.92 16 8 C -0.06 -2.54 5.99 71.97 0.43 -2.11 16 9 C -0.07 -3.22 2.34 -11.09 -0.03 -3.24 16 10 H 0.06 2.95 6.54 -2.38 -0.02 2.93 16 11 C 0.08 3.35 4.63 86.21 0.40 3.75 16 12 C 0.05 2.56 1.44 -11.93 -0.02 2.54 16 13 C -0.52 -27.47 7.14 25.60 0.18 -27.28 16 14 H 0.05 2.57 7.10 -2.91 -0.02 2.55 16 15 C 0.02 1.13 5.08 84.65 0.43 1.56 16 16 N -0.91 -51.93 12.06 21.45 0.26 -51.68 16 17 Si 0.94 43.11 29.55 68.60 2.03 45.14 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 22 H 0.08 1.90 8.08 -2.39 -0.02 1.88 16 23 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.01 0.41 7.16 -2.39 -0.02 0.39 16 25 H 0.08 2.52 8.06 -2.39 -0.02 2.50 16 26 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 27 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.07 2.42 8.11 -2.39 -0.02 2.40 16 31 H 0.01 0.48 7.58 -2.38 -0.02 0.47 16 32 H -0.01 -0.33 8.04 -2.39 -0.02 -0.34 16 33 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -57.09 259.75 3.61 -53.48 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 1.07 Total: 6.36 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 3.42 Total: -24.50 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -1.79 Total: -71.56 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -7.81 SS G_CDS: -1.10 Total: -8.92 kcal Total: -57.09 3.61 -53.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260576797.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.291 kcal (2) G-P(sol) polarization free energy of solvation -57.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds