Wall clock time and date at job start Mon Mar 30 2020 02:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09001 * 110.31368 * 57.52105 * 9 7 2 11 11 C 1.54436 * 110.35090 * 295.20364 * 9 7 2 12 12 C 1.54384 * 101.80947 * 266.80845 * 11 9 7 13 13 C 1.51675 * 105.02870 * 334.28886 * 12 11 9 14 14 N 1.37515 * 140.31241 * 196.95170 * 13 12 11 15 15 H 0.97003 * 124.97162 * 0.03990 * 14 13 12 16 16 C 1.37511 * 110.05385 * 180.02562 * 14 13 12 17 17 C 1.39176 * 133.56434 * 180.02562 * 16 14 13 18 18 C 1.37740 * 119.75554 * 180.02562 * 17 16 14 19 19 C 1.38831 * 120.69187 * 359.96727 * 18 17 16 20 20 C 1.36635 * 120.51321 * 0.04728 * 19 18 17 21 21 C 1.39614 * 119.71912 * 359.96739 * 20 19 18 22 22 C 1.34073 * 110.14954 * 16.98135 * 13 12 11 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09001 * 110.95934 * 24.93893 * 11 9 7 25 25 H 1.09002 * 110.95809 * 148.67942 * 11 9 7 26 26 H 1.08999 * 110.33419 * 215.40425 * 12 11 9 27 27 H 1.09000 * 110.41659 * 93.21930 * 12 11 9 28 28 H 1.08000 * 120.12263 * 359.95775 * 17 16 14 29 29 H 1.07998 * 119.65470 * 179.97438 * 18 17 16 30 30 H 1.08001 * 119.74305 * 180.02562 * 19 18 17 31 31 H 1.08003 * 120.14292 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.5900 -2.5507 -0.8706 11 6 0.4428 -2.6586 1.3010 12 6 1.4284 -3.4497 2.1877 13 6 2.3183 -4.1992 1.2146 14 7 3.1997 -5.2542 1.1839 15 1 3.4394 -5.8010 1.9485 16 6 3.6915 -5.4209 -0.0894 17 6 4.5907 -6.3165 -0.6608 18 6 4.8881 -6.2242 -2.0025 19 6 4.2996 -5.2465 -2.7932 20 6 3.4144 -4.3570 -2.2526 21 6 3.0992 -4.4328 -0.8946 22 6 2.2163 -3.6643 -0.0105 23 1 -0.4850 0.8401 -0.0004 24 1 0.2163 -1.6872 1.7404 25 1 -0.4699 -3.2289 1.1277 26 1 0.8873 -4.1509 2.8230 27 1 2.0226 -2.7686 2.7968 28 1 5.0543 -7.0803 -0.0541 29 1 5.5864 -6.9197 -2.4441 30 1 4.5436 -5.1883 -3.8437 31 1 2.9604 -3.5986 -2.8732 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260757566.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:55 Heat of formation + Delta-G solvation = 42.786168 kcal Electronic energy + Delta-G solvation = -15027.059580 eV Core-core repulsion = 12658.821546 eV Total energy + Delta-G solvation = -2368.238034 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.26902 -38.59450 -36.62462 -34.14032 -32.19978 -30.54160 -28.92859 -28.26602 -25.71268 -23.62228 -22.61054 -21.20346 -19.88437 -18.60983 -17.91142 -17.22119 -16.51882 -16.00115 -15.81021 -14.94475 -14.77623 -14.64388 -14.17340 -13.84396 -13.13660 -12.93228 -12.86976 -12.66864 -12.31961 -12.16596 -12.04129 -11.85055 -11.71866 -11.34711 -11.19429 -10.44305 -10.24392 -8.95152 -8.39345 -8.01539 -6.21541 0.30892 0.79985 1.38711 1.40624 1.52438 1.92597 2.08152 2.45429 3.09129 3.17363 3.87231 3.95998 4.13371 4.31720 4.35088 4.47070 4.57877 4.61906 4.71316 4.89714 5.09425 5.15321 5.26439 5.30026 5.35272 5.56771 5.66972 5.78110 5.82063 5.87534 6.05400 6.11952 6.37674 6.43366 6.83998 6.90382 7.45387 8.96688 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.030307 B = 0.008703 C = 0.007449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.653875 B = 3216.667981 C = 3757.974536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.017 3.983 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.037 0.963 9 C 0.105 3.895 10 H -0.012 1.012 11 C -0.091 4.091 12 C -0.022 4.022 13 C 0.024 3.976 14 N -0.573 5.573 15 H 0.424 0.576 16 C 0.091 3.909 17 C -0.133 4.133 18 C -0.100 4.100 19 C -0.152 4.152 20 C -0.096 4.096 21 C -0.128 4.128 22 C -0.190 4.190 23 H 0.263 0.737 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.152 0.848 29 H 0.162 0.838 30 H 0.144 0.856 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.511 -11.796 1.522 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.182 4.182 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.055 0.945 9 C 0.086 3.914 10 H 0.006 0.994 11 C -0.130 4.130 12 C -0.060 4.060 13 C -0.082 4.082 14 N -0.177 5.177 15 H 0.262 0.738 16 C -0.017 4.017 17 C -0.153 4.153 18 C -0.119 4.119 19 C -0.172 4.172 20 C -0.115 4.115 21 C -0.133 4.133 22 C -0.197 4.197 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.109 0.891 27 H 0.096 0.904 28 H 0.169 0.831 29 H 0.180 0.820 30 H 0.162 0.838 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.365 -11.725 1.662 13.946 hybrid contribution 0.127 1.111 0.078 1.121 sum 7.492 -10.614 1.741 13.108 Atomic orbital electron populations 1.70072 1.06927 1.27304 1.51242 1.25664 0.95678 1.01919 0.94916 0.85610 0.78763 0.79964 0.77965 1.19998 1.20537 1.19813 1.21231 0.92160 0.91244 1.50365 0.94471 1.17708 0.90699 0.89398 0.93587 0.99423 1.22102 0.95572 0.98717 0.96605 1.20693 0.94295 0.96131 0.94910 1.21421 0.96950 0.91394 0.98469 1.40931 1.39086 1.28931 1.08782 0.73763 1.18439 0.99856 0.99007 0.84381 1.20369 0.99126 0.99648 0.96182 1.21174 0.99831 0.98517 0.92402 1.20891 0.98616 0.96515 1.01129 1.20514 0.98581 0.99351 0.93011 1.19196 1.01033 0.98383 0.94699 1.21910 1.03523 1.00040 0.94191 0.92787 0.91401 0.93597 0.89083 0.90417 0.83053 0.82008 0.83847 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.58 12.12 21.45 0.26 -53.32 16 2 C 0.02 0.96 5.12 84.66 0.43 1.40 16 3 Si 0.95 44.85 29.54 68.60 2.03 46.88 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.51 -29.84 8.52 25.60 0.22 -29.62 16 8 H 0.04 2.24 7.76 -2.91 -0.02 2.22 16 9 C 0.11 5.73 2.76 -11.60 -0.03 5.70 16 10 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 11 C -0.09 -4.33 6.26 31.55 0.20 -4.13 16 12 C -0.02 -0.85 6.78 30.63 0.21 -0.64 16 13 C 0.02 1.00 7.98 41.03 0.33 1.32 16 14 N -0.57 -19.06 6.08 -174.78 -1.06 -20.13 16 15 H 0.42 10.20 8.96 -92.71 -0.83 9.36 16 16 C 0.09 3.23 7.28 39.04 0.28 3.51 16 17 C -0.13 -3.58 10.08 22.38 0.23 -3.36 16 18 C -0.10 -2.50 10.01 22.29 0.22 -2.28 16 19 C -0.15 -4.53 9.97 22.04 0.22 -4.31 16 20 C -0.10 -3.79 10.05 22.23 0.22 -3.56 16 21 C -0.13 -5.62 6.37 -20.17 -0.13 -5.75 16 22 C -0.19 -9.27 6.40 -18.41 -0.12 -9.39 16 23 H 0.26 14.49 8.31 -92.70 -0.77 13.71 16 24 H 0.07 3.50 6.74 -2.39 -0.02 3.48 16 25 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 28 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 29 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 30 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 31 H 0.10 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -68.86 263.23 3.81 -65.04 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.31 Total: 12.64 kcal Atomic # 6 Polarization: -53.40 SS G_CDS: 2.28 Total: -51.12 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -0.80 Total: -73.45 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -68.86 3.81 -65.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260757566.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.828 kcal (2) G-P(sol) polarization free energy of solvation -68.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds