Wall clock time and date at job start Mon Mar 30 2020 02:51:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86797 * 120.00069 * 2 1
4 4 H 1.48497 * 109.47410 * 269.72635 * 3 2 1
5 5 H 1.48495 * 109.47383 * 29.72963 * 3 2 1
6 6 H 1.48499 * 109.47043 * 149.72649 * 3 2 1
7 7 C 1.37875 * 119.99891 * 179.72812 * 2 1 3
8 8 H 1.08001 * 119.99852 * 0.02562 * 7 2 1
9 9 C 1.50702 * 120.00289 * 179.97438 * 7 2 1
10 10 H 1.08999 * 109.39806 * 54.45994 * 9 7 2
11 11 C 1.53244 * 109.40367 * 294.70096 * 9 7 2
12 12 S 1.81904 * 108.50343 * 177.87614 * 11 9 7
13 13 C 1.81900 * 101.91339 * 51.30368 * 12 11 9
14 14 C 1.53246 * 108.50438 * 308.69573 * 13 12 11
15 15 N 1.46466 * 109.40574 * 174.30160 * 9 7 2
16 16 C 1.46899 * 111.00375 * 317.88611 * 15 9 7
17 17 C 1.53775 * 113.61421 * 272.46716 * 16 15 9
18 18 C 1.53950 * 87.02065 * 220.04576 * 17 16 15
19 19 C 1.53781 * 113.61531 * 174.85403 * 16 15 9
20 20 H 0.97007 * 119.99513 * 0.26624 * 1 2 3
21 21 H 1.08995 * 109.63384 * 297.57668 * 11 9 7
22 22 H 1.09004 * 109.63338 * 58.17147 * 11 9 7
23 23 H 1.09002 * 109.62871 * 188.99259 * 13 12 11
24 24 H 1.08994 * 109.79251 * 68.49963 * 13 12 11
25 25 H 1.08999 * 109.40653 * 301.88402 * 14 13 12
26 26 H 1.09004 * 109.40331 * 182.12519 * 14 13 12
27 27 H 1.09002 * 112.84688 * 43.65844 * 16 15 9
28 28 H 1.08999 * 113.61697 * 334.56581 * 17 16 15
29 29 H 1.08997 * 113.61847 * 105.46737 * 17 16 15
30 30 H 1.08999 * 113.54157 * 270.80982 * 18 17 16
31 31 H 1.08999 * 113.74879 * 139.94264 * 18 17 16
32 32 H 1.08994 * 113.61851 * 254.53162 * 19 16 15
33 33 H 1.09003 * 113.61133 * 25.44038 * 19 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.5025 2.0431 -1.4000
5 1 1.4439 2.6543 0.6943
6 1 3.5438 1.4418 0.7058
7 6 2.0045 -1.1940 0.0057
8 1 1.4645 -2.1293 0.0097
9 6 3.5116 -1.1941 0.0051
10 1 3.8740 -0.5924 0.8385
11 6 4.0202 -0.5967 -1.3112
12 16 5.8379 -0.5503 -1.2599
13 6 6.2441 -2.2597 -0.7891
14 6 5.4292 -2.6281 0.4554
15 7 3.9982 -2.5681 0.1489
16 6 3.2139 -3.3023 1.1508
17 6 3.7418 -3.1401 2.5860
18 6 3.4332 -4.6354 2.7828
19 6 3.5921 -4.7888 1.2608
20 1 -0.4850 0.8401 -0.0039
21 1 3.6933 -1.2172 -2.1456
22 1 3.6312 0.4147 -1.4289
23 1 7.3082 -2.3349 -0.5654
24 1 5.9926 -2.9369 -1.6052
25 1 5.6573 -1.9272 1.2583
26 1 5.6895 -3.6379 0.7729
27 1 2.1416 -3.1302 1.0580
28 1 4.8046 -2.9034 2.6362
29 1 3.1311 -2.4822 3.2042
30 1 2.4207 -4.8280 3.1376
31 1 4.1912 -5.1683 3.3568
32 1 2.8607 -5.4599 0.8108
33 1 4.6140 -5.0036 0.9481
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260959922.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:51:56
Heat of formation + Delta-G solvation = 36.935655 kcal
Electronic energy + Delta-G solvation = -14706.994623 eV
Core-core repulsion = 12473.946843 eV
Total energy + Delta-G solvation = -2233.047780 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 227.104 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-39.35823 -35.57778 -32.95104 -30.87190 -28.90494 -25.39387 -25.19374 -23.55556
-22.62006 -20.01326 -18.36312 -16.90584 -16.40049 -15.59533 -15.00928 -14.52728
-13.95351 -13.62310 -13.25484 -12.94391 -12.70089 -12.34862 -12.07765 -11.65740
-11.50237 -11.33454 -11.11679 -10.63472 -10.53124 -10.36408 -10.06654 -9.94999
-9.65894 -9.28185 -8.88155 -8.64519 -7.46811 -7.13308 -6.23171 -4.24421
2.41010 3.14755 3.19159 3.29830 3.34470 4.26804 4.51839 5.06838
5.11481 5.12770 5.27656 5.34640 5.53094 5.60796 5.71070 5.87331
6.02343 6.06946 6.12300 6.16872 6.22612 6.30302 6.34692 6.43822
6.49134 6.62478 7.02735 7.09523 7.31374 7.83791 7.94320 8.47447
8.80487 9.36826 10.87648
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.021636 B = 0.014351 C = 0.009552
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1293.845087 B = 1950.623392 C = 2930.466680
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.889 5.889
2 C 0.079 3.921
3 Si 0.863 3.137
4 H -0.274 1.274
5 H -0.288 1.288
6 H -0.257 1.257
7 C -0.513 4.513
8 H 0.091 0.909
9 C 0.191 3.809
10 H 0.017 0.983
11 C -0.054 4.054
12 S -0.335 6.335
13 C -0.062 4.062
14 C 0.052 3.948
15 N -0.530 5.530
16 C 0.083 3.917
17 C -0.178 4.178
18 C -0.139 4.139
19 C -0.141 4.141
20 H 0.267 0.733
21 H 0.087 0.913
22 H 0.088 0.912
23 H 0.094 0.906
24 H 0.085 0.915
25 H 0.040 0.960
26 H 0.077 0.923
27 H 0.131 0.869
28 H 0.075 0.925
29 H 0.065 0.935
30 H 0.077 0.923
31 H 0.058 0.942
32 H 0.064 0.936
33 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.880 -5.969 2.379 10.961
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.525 5.525
2 C -0.125 4.125
3 Si 0.691 3.309
4 H -0.200 1.200
5 H -0.215 1.215
6 H -0.181 1.181
7 C -0.553 4.553
8 H 0.109 0.891
9 C 0.082 3.918
10 H 0.035 0.965
11 C -0.202 4.202
12 S -0.108 6.108
13 C -0.211 4.211
14 C -0.078 4.078
15 N -0.253 5.253
16 C -0.025 4.025
17 C -0.218 4.218
18 C -0.177 4.177
19 C -0.179 4.179
20 H 0.077 0.923
21 H 0.106 0.894
22 H 0.106 0.894
23 H 0.112 0.888
24 H 0.103 0.897
25 H 0.058 0.942
26 H 0.095 0.905
27 H 0.149 0.851
28 H 0.093 0.907
29 H 0.084 0.916
30 H 0.096 0.904
31 H 0.077 0.923
32 H 0.083 0.917
33 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 9.382 -5.186 1.689 10.852
hybrid contribution -0.247 0.491 0.821 0.987
sum 9.135 -4.696 2.509 10.573
Atomic orbital electron populations
1.69862 1.06087 1.27271 1.49327 1.24908 0.94728 0.98744 0.94139
0.87152 0.80894 0.84127 0.78744 1.20018 1.21483 1.18096 1.21031
0.87540 0.94957 1.51744 0.89146 1.19732 0.96324 0.84745 0.90967
0.96535 1.24356 0.87255 1.04098 1.04529 1.86532 1.14159 1.17953
1.92146 1.23348 1.01704 0.94885 1.01127 1.22233 0.89863 1.00798
0.94919 1.60957 1.00593 1.16829 1.46885 1.23311 1.00748 0.91353
0.87103 1.23647 1.01156 0.96327 1.00623 1.22702 1.01250 0.97020
0.96707 1.23183 1.01300 0.98050 0.95366 0.92281 0.89431 0.89365
0.88773 0.89653 0.94166 0.90500 0.85112 0.90700 0.91607 0.90424
0.92298 0.91744 0.90631
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.80 13.96 55.43 0.77 -25.02 16
2 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16
3 Si 0.86 21.01 24.68 -169.99 -4.19 16.81 16
4 H -0.27 -6.55 6.86 56.52 0.39 -6.17 16
5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
6 H -0.26 -6.19 6.38 56.52 0.36 -5.83 16
7 C -0.51 -13.47 8.16 -34.44 -0.28 -13.75 16
8 H 0.09 2.54 6.05 -52.49 -0.32 2.22 16
9 C 0.19 4.40 1.47 -68.97 -0.10 4.30 16
10 H 0.02 0.42 6.57 -51.93 -0.34 0.08 16
11 C -0.05 -1.21 5.54 37.28 0.21 -1.00 16
12 S -0.33 -6.55 22.40 -107.50 -2.41 -8.96 16
13 C -0.06 -0.99 6.69 37.28 0.25 -0.74 16
14 C 0.05 0.87 3.96 -3.93 -0.02 0.85 16
15 N -0.53 -10.50 4.43 -219.53 -0.97 -11.47 16
16 C 0.08 1.55 3.44 -66.90 -0.23 1.32 16
17 C -0.18 -2.94 7.37 -25.83 -0.19 -3.13 16
18 C -0.14 -1.93 8.09 -25.83 -0.21 -2.14 16
19 C -0.14 -2.11 7.52 -25.92 -0.19 -2.31 16
20 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16
21 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16
22 H 0.09 2.06 4.01 -51.93 -0.21 1.86 16
23 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16
24 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16
25 H 0.04 0.72 6.92 -51.93 -0.36 0.36 16
26 H 0.08 1.12 5.65 -51.93 -0.29 0.83 16
27 H 0.13 2.82 5.35 -51.93 -0.28 2.54 16
28 H 0.07 1.19 5.86 -51.93 -0.30 0.88 16
29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16
31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
33 H 0.08 1.06 6.21 -51.93 -0.32 0.74 16
LS Contribution 255.40 15.07 3.85 3.85
Total: -1.00 -27.63 255.40 -8.39 -36.02
By element:
Atomic # 1 Polarization: 7.91 SS G_CDS: -4.57 Total: 3.33 kcal
Atomic # 6 Polarization: -13.69 SS G_CDS: -0.86 Total: -14.55 kcal
Atomic # 7 Polarization: -36.30 SS G_CDS: -0.20 Total: -36.50 kcal
Atomic # 14 Polarization: 21.01 SS G_CDS: -4.19 Total: 16.81 kcal
Atomic # 16 Polarization: -6.55 SS G_CDS: -2.41 Total: -8.96 kcal
Total LS contribution 3.85 Total: 3.85 kcal
Total: -27.63 -8.39 -36.02 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260959922.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.952 kcal
(2) G-P(sol) polarization free energy of solvation -27.627 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.324 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.016 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.936 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds