Wall clock time and date at job start Mon Mar 30 2020 02:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00069 * 2 1 4 4 H 1.48497 * 109.47410 * 269.72635 * 3 2 1 5 5 H 1.48495 * 109.47383 * 29.72963 * 3 2 1 6 6 H 1.48499 * 109.47043 * 149.72649 * 3 2 1 7 7 C 1.37875 * 119.99891 * 179.72812 * 2 1 3 8 8 H 1.08001 * 119.99852 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00289 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.39806 * 54.45994 * 9 7 2 11 11 C 1.53244 * 109.40367 * 294.70096 * 9 7 2 12 12 S 1.81904 * 108.50343 * 177.87614 * 11 9 7 13 13 C 1.81900 * 101.91339 * 51.30368 * 12 11 9 14 14 C 1.53246 * 108.50438 * 308.69573 * 13 12 11 15 15 N 1.46466 * 109.40574 * 174.30160 * 9 7 2 16 16 C 1.46899 * 111.00375 * 317.88611 * 15 9 7 17 17 C 1.53775 * 113.61421 * 272.46716 * 16 15 9 18 18 C 1.53950 * 87.02065 * 220.04576 * 17 16 15 19 19 C 1.53781 * 113.61531 * 174.85403 * 16 15 9 20 20 H 0.97007 * 119.99513 * 0.26624 * 1 2 3 21 21 H 1.08995 * 109.63384 * 297.57668 * 11 9 7 22 22 H 1.09004 * 109.63338 * 58.17147 * 11 9 7 23 23 H 1.09002 * 109.62871 * 188.99259 * 13 12 11 24 24 H 1.08994 * 109.79251 * 68.49963 * 13 12 11 25 25 H 1.08999 * 109.40653 * 301.88402 * 14 13 12 26 26 H 1.09004 * 109.40331 * 182.12519 * 14 13 12 27 27 H 1.09002 * 112.84688 * 43.65844 * 16 15 9 28 28 H 1.08999 * 113.61697 * 334.56581 * 17 16 15 29 29 H 1.08997 * 113.61847 * 105.46737 * 17 16 15 30 30 H 1.08999 * 113.54157 * 270.80982 * 18 17 16 31 31 H 1.08999 * 113.74879 * 139.94264 * 18 17 16 32 32 H 1.08994 * 113.61851 * 254.53162 * 19 16 15 33 33 H 1.09003 * 113.61133 * 25.44038 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5025 2.0431 -1.4000 5 1 1.4439 2.6543 0.6943 6 1 3.5438 1.4418 0.7058 7 6 2.0045 -1.1940 0.0057 8 1 1.4645 -2.1293 0.0097 9 6 3.5116 -1.1941 0.0051 10 1 3.8740 -0.5924 0.8385 11 6 4.0202 -0.5967 -1.3112 12 16 5.8379 -0.5503 -1.2599 13 6 6.2441 -2.2597 -0.7891 14 6 5.4292 -2.6281 0.4554 15 7 3.9982 -2.5681 0.1489 16 6 3.2139 -3.3023 1.1508 17 6 3.7418 -3.1401 2.5860 18 6 3.4332 -4.6354 2.7828 19 6 3.5921 -4.7888 1.2608 20 1 -0.4850 0.8401 -0.0039 21 1 3.6933 -1.2172 -2.1456 22 1 3.6312 0.4147 -1.4289 23 1 7.3082 -2.3349 -0.5654 24 1 5.9926 -2.9369 -1.6052 25 1 5.6573 -1.9272 1.2583 26 1 5.6895 -3.6379 0.7729 27 1 2.1416 -3.1302 1.0580 28 1 4.8046 -2.9034 2.6362 29 1 3.1311 -2.4822 3.2042 30 1 2.4207 -4.8280 3.1376 31 1 4.1912 -5.1683 3.3568 32 1 2.8607 -5.4599 0.8108 33 1 4.6140 -5.0036 0.9481 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260959922.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:56 Heat of formation + Delta-G solvation = 36.935655 kcal Electronic energy + Delta-G solvation = -14706.994623 eV Core-core repulsion = 12473.946843 eV Total energy + Delta-G solvation = -2233.047780 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.35823 -35.57778 -32.95104 -30.87190 -28.90494 -25.39387 -25.19374 -23.55556 -22.62006 -20.01326 -18.36312 -16.90584 -16.40049 -15.59533 -15.00928 -14.52728 -13.95351 -13.62310 -13.25484 -12.94391 -12.70089 -12.34862 -12.07765 -11.65740 -11.50237 -11.33454 -11.11679 -10.63472 -10.53124 -10.36408 -10.06654 -9.94999 -9.65894 -9.28185 -8.88155 -8.64519 -7.46811 -7.13308 -6.23171 -4.24421 2.41010 3.14755 3.19159 3.29830 3.34470 4.26804 4.51839 5.06838 5.11481 5.12770 5.27656 5.34640 5.53094 5.60796 5.71070 5.87331 6.02343 6.06946 6.12300 6.16872 6.22612 6.30302 6.34692 6.43822 6.49134 6.62478 7.02735 7.09523 7.31374 7.83791 7.94320 8.47447 8.80487 9.36826 10.87648 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.014351 C = 0.009552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.845087 B = 1950.623392 C = 2930.466680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.079 3.921 3 Si 0.863 3.137 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.257 1.257 7 C -0.513 4.513 8 H 0.091 0.909 9 C 0.191 3.809 10 H 0.017 0.983 11 C -0.054 4.054 12 S -0.335 6.335 13 C -0.062 4.062 14 C 0.052 3.948 15 N -0.530 5.530 16 C 0.083 3.917 17 C -0.178 4.178 18 C -0.139 4.139 19 C -0.141 4.141 20 H 0.267 0.733 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.077 0.923 27 H 0.131 0.869 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.880 -5.969 2.379 10.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.691 3.309 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.181 1.181 7 C -0.553 4.553 8 H 0.109 0.891 9 C 0.082 3.918 10 H 0.035 0.965 11 C -0.202 4.202 12 S -0.108 6.108 13 C -0.211 4.211 14 C -0.078 4.078 15 N -0.253 5.253 16 C -0.025 4.025 17 C -0.218 4.218 18 C -0.177 4.177 19 C -0.179 4.179 20 H 0.077 0.923 21 H 0.106 0.894 22 H 0.106 0.894 23 H 0.112 0.888 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.095 0.905 27 H 0.149 0.851 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.382 -5.186 1.689 10.852 hybrid contribution -0.247 0.491 0.821 0.987 sum 9.135 -4.696 2.509 10.573 Atomic orbital electron populations 1.69862 1.06087 1.27271 1.49327 1.24908 0.94728 0.98744 0.94139 0.87152 0.80894 0.84127 0.78744 1.20018 1.21483 1.18096 1.21031 0.87540 0.94957 1.51744 0.89146 1.19732 0.96324 0.84745 0.90967 0.96535 1.24356 0.87255 1.04098 1.04529 1.86532 1.14159 1.17953 1.92146 1.23348 1.01704 0.94885 1.01127 1.22233 0.89863 1.00798 0.94919 1.60957 1.00593 1.16829 1.46885 1.23311 1.00748 0.91353 0.87103 1.23647 1.01156 0.96327 1.00623 1.22702 1.01250 0.97020 0.96707 1.23183 1.01300 0.98050 0.95366 0.92281 0.89431 0.89365 0.88773 0.89653 0.94166 0.90500 0.85112 0.90700 0.91607 0.90424 0.92298 0.91744 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.96 55.43 0.77 -25.02 16 2 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 3 Si 0.86 21.01 24.68 -169.99 -4.19 16.81 16 4 H -0.27 -6.55 6.86 56.52 0.39 -6.17 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.19 6.38 56.52 0.36 -5.83 16 7 C -0.51 -13.47 8.16 -34.44 -0.28 -13.75 16 8 H 0.09 2.54 6.05 -52.49 -0.32 2.22 16 9 C 0.19 4.40 1.47 -68.97 -0.10 4.30 16 10 H 0.02 0.42 6.57 -51.93 -0.34 0.08 16 11 C -0.05 -1.21 5.54 37.28 0.21 -1.00 16 12 S -0.33 -6.55 22.40 -107.50 -2.41 -8.96 16 13 C -0.06 -0.99 6.69 37.28 0.25 -0.74 16 14 C 0.05 0.87 3.96 -3.93 -0.02 0.85 16 15 N -0.53 -10.50 4.43 -219.53 -0.97 -11.47 16 16 C 0.08 1.55 3.44 -66.90 -0.23 1.32 16 17 C -0.18 -2.94 7.37 -25.83 -0.19 -3.13 16 18 C -0.14 -1.93 8.09 -25.83 -0.21 -2.14 16 19 C -0.14 -2.11 7.52 -25.92 -0.19 -2.31 16 20 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 21 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 22 H 0.09 2.06 4.01 -51.93 -0.21 1.86 16 23 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.04 0.72 6.92 -51.93 -0.36 0.36 16 26 H 0.08 1.12 5.65 -51.93 -0.29 0.83 16 27 H 0.13 2.82 5.35 -51.93 -0.28 2.54 16 28 H 0.07 1.19 5.86 -51.93 -0.30 0.88 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.06 6.21 -51.93 -0.32 0.74 16 LS Contribution 255.40 15.07 3.85 3.85 Total: -1.00 -27.63 255.40 -8.39 -36.02 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.57 Total: 3.33 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -0.86 Total: -14.55 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.20 Total: -36.50 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.19 Total: 16.81 kcal Atomic # 16 Polarization: -6.55 SS G_CDS: -2.41 Total: -8.96 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.63 -8.39 -36.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260959922.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.952 kcal (2) G-P(sol) polarization free energy of solvation -27.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds