Wall clock time and date at job start Mon Mar 30 2020 02:51:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86797 * 120.00069 * 2 1
4 4 H 1.48497 * 109.47410 * 269.72635 * 3 2 1
5 5 H 1.48495 * 109.47383 * 29.72963 * 3 2 1
6 6 H 1.48499 * 109.47043 * 149.72649 * 3 2 1
7 7 C 1.37875 * 119.99891 * 179.72812 * 2 1 3
8 8 H 1.08001 * 119.99852 * 0.02562 * 7 2 1
9 9 C 1.50702 * 120.00289 * 179.97438 * 7 2 1
10 10 H 1.08999 * 109.39806 * 54.45994 * 9 7 2
11 11 C 1.53244 * 109.40367 * 294.70096 * 9 7 2
12 12 S 1.81904 * 108.50343 * 177.87614 * 11 9 7
13 13 C 1.81900 * 101.91339 * 51.30368 * 12 11 9
14 14 C 1.53246 * 108.50438 * 308.69573 * 13 12 11
15 15 N 1.46466 * 109.40574 * 174.30160 * 9 7 2
16 16 C 1.46899 * 111.00375 * 317.88611 * 15 9 7
17 17 C 1.53775 * 113.61421 * 272.46716 * 16 15 9
18 18 C 1.53950 * 87.02065 * 220.04576 * 17 16 15
19 19 C 1.53781 * 113.61531 * 174.85403 * 16 15 9
20 20 H 0.97007 * 119.99513 * 0.26624 * 1 2 3
21 21 H 1.08995 * 109.63384 * 297.57668 * 11 9 7
22 22 H 1.09004 * 109.63338 * 58.17147 * 11 9 7
23 23 H 1.09002 * 109.62871 * 188.99259 * 13 12 11
24 24 H 1.08994 * 109.79251 * 68.49963 * 13 12 11
25 25 H 1.08999 * 109.40653 * 301.88402 * 14 13 12
26 26 H 1.09004 * 109.40331 * 182.12519 * 14 13 12
27 27 H 1.09002 * 112.84688 * 43.65844 * 16 15 9
28 28 H 1.08999 * 113.61697 * 334.56581 * 17 16 15
29 29 H 1.08997 * 113.61847 * 105.46737 * 17 16 15
30 30 H 1.08999 * 113.54157 * 270.80982 * 18 17 16
31 31 H 1.08999 * 113.74879 * 139.94264 * 18 17 16
32 32 H 1.08994 * 113.61851 * 254.53162 * 19 16 15
33 33 H 1.09003 * 113.61133 * 25.44038 * 19 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.5025 2.0431 -1.4000
5 1 1.4439 2.6543 0.6943
6 1 3.5438 1.4418 0.7058
7 6 2.0045 -1.1940 0.0057
8 1 1.4645 -2.1293 0.0097
9 6 3.5116 -1.1941 0.0051
10 1 3.8740 -0.5924 0.8385
11 6 4.0202 -0.5967 -1.3112
12 16 5.8379 -0.5503 -1.2599
13 6 6.2441 -2.2597 -0.7891
14 6 5.4292 -2.6281 0.4554
15 7 3.9982 -2.5681 0.1489
16 6 3.2139 -3.3023 1.1508
17 6 3.7418 -3.1401 2.5860
18 6 3.4332 -4.6354 2.7828
19 6 3.5921 -4.7888 1.2608
20 1 -0.4850 0.8401 -0.0039
21 1 3.6933 -1.2172 -2.1456
22 1 3.6312 0.4147 -1.4289
23 1 7.3082 -2.3349 -0.5654
24 1 5.9926 -2.9369 -1.6052
25 1 5.6573 -1.9272 1.2583
26 1 5.6895 -3.6379 0.7729
27 1 2.1416 -3.1302 1.0580
28 1 4.8046 -2.9034 2.6362
29 1 3.1311 -2.4822 3.2042
30 1 2.4207 -4.8280 3.1376
31 1 4.1912 -5.1683 3.3568
32 1 2.8607 -5.4599 0.8108
33 1 4.6140 -5.0036 0.9481
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260959922.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:51:56
Heat of formation + Delta-G solvation = 19.026227 kcal
Electronic energy + Delta-G solvation = -14707.771234 eV
Core-core repulsion = 12473.946843 eV
Total energy + Delta-G solvation = -2233.824391 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 227.104 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.78643 -37.11911 -34.83164 -32.61691 -30.41133 -27.34158 -26.47430 -24.92548
-24.13591 -21.67167 -19.88430 -18.74218 -17.98616 -17.07722 -16.48527 -16.29327
-15.65467 -15.10117 -15.03616 -14.46871 -14.12280 -13.99172 -13.42296 -13.36830
-13.02587 -12.86959 -12.62309 -12.47691 -12.21489 -11.81833 -11.61147 -11.45801
-11.26925 -10.90960 -10.75568 -10.46703 -9.02554 -8.68423 -8.36616 -6.39979
0.90030 1.20847 1.29125 1.37135 1.61091 2.22418 2.95628 3.05139
3.82677 3.87012 3.96081 4.06083 4.20392 4.27408 4.29453 4.38396
4.50876 4.53832 4.66265 4.83799 4.92987 4.96637 5.06470 5.11801
5.14832 5.24286 5.32347 5.42685 5.63831 5.97369 6.30030 6.65724
6.68539 7.24629 8.77599
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.021636 B = 0.014351 C = 0.009552
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1293.845087 B = 1950.623392 C = 2930.466680
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C 0.030 3.970
3 Si 0.916 3.084
4 H -0.266 1.266
5 H -0.287 1.287
6 H -0.253 1.253
7 C -0.507 4.507
8 H 0.061 0.939
9 C 0.201 3.799
10 H -0.002 1.002
11 C -0.057 4.057
12 S -0.337 6.337
13 C -0.053 4.053
14 C 0.051 3.949
15 N -0.537 5.537
16 C 0.063 3.937
17 C -0.177 4.177
18 C -0.123 4.123
19 C -0.125 4.125
20 H 0.268 0.732
21 H 0.080 0.920
22 H 0.073 0.927
23 H 0.132 0.868
24 H 0.094 0.906
25 H 0.034 0.966
26 H 0.111 0.889
27 H 0.088 0.912
28 H 0.088 0.912
29 H 0.043 0.957
30 H 0.076 0.924
31 H 0.089 0.911
32 H 0.066 0.934
33 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.760 -7.192 2.755 14.058
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.573 5.573
2 C -0.170 4.170
3 Si 0.743 3.257
4 H -0.192 1.192
5 H -0.214 1.214
6 H -0.177 1.177
7 C -0.546 4.546
8 H 0.079 0.921
9 C 0.091 3.909
10 H 0.015 0.985
11 C -0.206 4.206
12 S -0.111 6.111
13 C -0.201 4.201
14 C -0.078 4.078
15 N -0.260 5.260
16 C -0.046 4.046
17 C -0.217 4.217
18 C -0.161 4.161
19 C -0.163 4.163
20 H 0.077 0.923
21 H 0.099 0.901
22 H 0.091 0.909
23 H 0.150 0.850
24 H 0.112 0.888
25 H 0.052 0.948
26 H 0.128 0.872
27 H 0.106 0.894
28 H 0.106 0.894
29 H 0.062 0.938
30 H 0.095 0.905
31 H 0.108 0.892
32 H 0.084 0.916
33 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges 12.277 -6.425 2.068 14.010
hybrid contribution -1.106 0.759 0.718 1.522
sum 11.171 -5.666 2.786 12.832
Atomic orbital electron populations
1.69981 1.07588 1.28019 1.51724 1.25561 0.95266 1.01801 0.94325
0.86281 0.79752 0.80642 0.79043 1.19215 1.21407 1.17678 1.21250
0.89730 0.93697 1.49964 0.92107 1.19438 0.93955 0.86721 0.90772
0.98463 1.24002 0.90223 1.02952 1.03398 1.86506 1.10613 1.21511
1.92420 1.23546 1.03667 0.92000 1.00916 1.22358 0.87675 1.02594
0.95193 1.60985 1.02593 1.14544 1.47897 1.23295 0.98611 0.94270
0.88383 1.23646 1.01345 0.98103 0.98571 1.22643 1.02247 0.94842
0.96328 1.23119 1.02345 0.94733 0.96123 0.92260 0.90112 0.90901
0.84975 0.88775 0.94801 0.87158 0.89423 0.89352 0.93784 0.90494
0.89248 0.91561 0.88578
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.42 13.96 21.45 0.30 -56.12 16
2 C 0.03 1.70 5.45 84.65 0.46 2.17 16
3 Si 0.92 44.35 24.68 68.60 1.69 46.05 16
4 H -0.27 -12.46 6.86 99.48 0.68 -11.78 16
5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16
6 H -0.25 -11.94 6.38 99.48 0.63 -11.30 16
7 C -0.51 -27.66 8.16 25.60 0.21 -27.45 16
8 H 0.06 3.63 6.05 -2.91 -0.02 3.61 16
9 C 0.20 9.29 1.47 44.33 0.07 9.35 16
10 H 0.00 -0.10 6.57 -2.39 -0.02 -0.12 16
11 C -0.06 -2.52 5.54 72.06 0.40 -2.12 16
12 S -0.34 -12.41 22.40 -56.49 -1.27 -13.67 16
13 C -0.05 -1.49 6.69 72.06 0.48 -1.01 16
14 C 0.05 1.53 3.96 86.47 0.34 1.87 16
15 N -0.54 -20.71 4.43 -848.46 -3.76 -24.46 16
16 C 0.06 2.31 3.44 45.44 0.16 2.46 16
17 C -0.18 -5.60 7.37 31.18 0.23 -5.37 16
18 C -0.12 -3.06 8.09 31.18 0.25 -2.81 16
19 C -0.13 -3.41 7.52 31.12 0.23 -3.18 16
20 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16
21 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16
22 H 0.07 3.40 4.01 -2.39 -0.01 3.39 16
23 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16
24 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16
25 H 0.03 1.09 6.92 -2.39 -0.02 1.08 16
26 H 0.11 2.64 5.65 -2.38 -0.01 2.62 16
27 H 0.09 3.98 5.35 -2.39 -0.01 3.97 16
28 H 0.09 2.54 5.86 -2.39 -0.01 2.53 16
29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16
30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16
31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16
32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
33 H 0.10 2.24 6.21 -2.39 -0.01 2.23 16
Total: -1.00 -61.60 255.40 0.80 -60.79
By element:
Atomic # 1 Polarization: 12.51 SS G_CDS: 1.00 Total: 13.51 kcal
Atomic # 6 Polarization: -28.92 SS G_CDS: 2.83 Total: -26.09 kcal
Atomic # 7 Polarization: -77.12 SS G_CDS: -3.46 Total: -80.58 kcal
Atomic # 14 Polarization: 44.35 SS G_CDS: 1.69 Total: 46.05 kcal
Atomic # 16 Polarization: -12.41 SS G_CDS: -1.27 Total: -13.67 kcal
Total: -61.60 0.80 -60.79 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260959922.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.819 kcal
(2) G-P(sol) polarization free energy of solvation -61.596 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.223 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.793 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.026 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds