Wall clock time and date at job start Mon Mar 30 2020 02:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00069 * 2 1 4 4 H 1.48497 * 109.47410 * 269.72635 * 3 2 1 5 5 H 1.48495 * 109.47383 * 29.72963 * 3 2 1 6 6 H 1.48499 * 109.47043 * 149.72649 * 3 2 1 7 7 C 1.37875 * 119.99891 * 179.72812 * 2 1 3 8 8 H 1.08001 * 119.99852 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00289 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.39806 * 54.45994 * 9 7 2 11 11 C 1.53244 * 109.40367 * 294.70096 * 9 7 2 12 12 S 1.81904 * 108.50343 * 177.87614 * 11 9 7 13 13 C 1.81900 * 101.91339 * 51.30368 * 12 11 9 14 14 C 1.53246 * 108.50438 * 308.69573 * 13 12 11 15 15 N 1.46466 * 109.40574 * 174.30160 * 9 7 2 16 16 C 1.46899 * 111.00375 * 317.88611 * 15 9 7 17 17 C 1.53775 * 113.61421 * 272.46716 * 16 15 9 18 18 C 1.53950 * 87.02065 * 220.04576 * 17 16 15 19 19 C 1.53781 * 113.61531 * 174.85403 * 16 15 9 20 20 H 0.97007 * 119.99513 * 0.26624 * 1 2 3 21 21 H 1.08995 * 109.63384 * 297.57668 * 11 9 7 22 22 H 1.09004 * 109.63338 * 58.17147 * 11 9 7 23 23 H 1.09002 * 109.62871 * 188.99259 * 13 12 11 24 24 H 1.08994 * 109.79251 * 68.49963 * 13 12 11 25 25 H 1.08999 * 109.40653 * 301.88402 * 14 13 12 26 26 H 1.09004 * 109.40331 * 182.12519 * 14 13 12 27 27 H 1.09002 * 112.84688 * 43.65844 * 16 15 9 28 28 H 1.08999 * 113.61697 * 334.56581 * 17 16 15 29 29 H 1.08997 * 113.61847 * 105.46737 * 17 16 15 30 30 H 1.08999 * 113.54157 * 270.80982 * 18 17 16 31 31 H 1.08999 * 113.74879 * 139.94264 * 18 17 16 32 32 H 1.08994 * 113.61851 * 254.53162 * 19 16 15 33 33 H 1.09003 * 113.61133 * 25.44038 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5025 2.0431 -1.4000 5 1 1.4439 2.6543 0.6943 6 1 3.5438 1.4418 0.7058 7 6 2.0045 -1.1940 0.0057 8 1 1.4645 -2.1293 0.0097 9 6 3.5116 -1.1941 0.0051 10 1 3.8740 -0.5924 0.8385 11 6 4.0202 -0.5967 -1.3112 12 16 5.8379 -0.5503 -1.2599 13 6 6.2441 -2.2597 -0.7891 14 6 5.4292 -2.6281 0.4554 15 7 3.9982 -2.5681 0.1489 16 6 3.2139 -3.3023 1.1508 17 6 3.7418 -3.1401 2.5860 18 6 3.4332 -4.6354 2.7828 19 6 3.5921 -4.7888 1.2608 20 1 -0.4850 0.8401 -0.0039 21 1 3.6933 -1.2172 -2.1456 22 1 3.6312 0.4147 -1.4289 23 1 7.3082 -2.3349 -0.5654 24 1 5.9926 -2.9369 -1.6052 25 1 5.6573 -1.9272 1.2583 26 1 5.6895 -3.6379 0.7729 27 1 2.1416 -3.1302 1.0580 28 1 4.8046 -2.9034 2.6362 29 1 3.1311 -2.4822 3.2042 30 1 2.4207 -4.8280 3.1376 31 1 4.1912 -5.1683 3.3568 32 1 2.8607 -5.4599 0.8108 33 1 4.6140 -5.0036 0.9481 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260959922.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:56 Heat of formation + Delta-G solvation = 19.026227 kcal Electronic energy + Delta-G solvation = -14707.771234 eV Core-core repulsion = 12473.946843 eV Total energy + Delta-G solvation = -2233.824391 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.78643 -37.11911 -34.83164 -32.61691 -30.41133 -27.34158 -26.47430 -24.92548 -24.13591 -21.67167 -19.88430 -18.74218 -17.98616 -17.07722 -16.48527 -16.29327 -15.65467 -15.10117 -15.03616 -14.46871 -14.12280 -13.99172 -13.42296 -13.36830 -13.02587 -12.86959 -12.62309 -12.47691 -12.21489 -11.81833 -11.61147 -11.45801 -11.26925 -10.90960 -10.75568 -10.46703 -9.02554 -8.68423 -8.36616 -6.39979 0.90030 1.20847 1.29125 1.37135 1.61091 2.22418 2.95628 3.05139 3.82677 3.87012 3.96081 4.06083 4.20392 4.27408 4.29453 4.38396 4.50876 4.53832 4.66265 4.83799 4.92987 4.96637 5.06470 5.11801 5.14832 5.24286 5.32347 5.42685 5.63831 5.97369 6.30030 6.65724 6.68539 7.24629 8.77599 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.014351 C = 0.009552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.845087 B = 1950.623392 C = 2930.466680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.030 3.970 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.253 1.253 7 C -0.507 4.507 8 H 0.061 0.939 9 C 0.201 3.799 10 H -0.002 1.002 11 C -0.057 4.057 12 S -0.337 6.337 13 C -0.053 4.053 14 C 0.051 3.949 15 N -0.537 5.537 16 C 0.063 3.937 17 C -0.177 4.177 18 C -0.123 4.123 19 C -0.125 4.125 20 H 0.268 0.732 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.132 0.868 24 H 0.094 0.906 25 H 0.034 0.966 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.760 -7.192 2.755 14.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.170 4.170 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.177 1.177 7 C -0.546 4.546 8 H 0.079 0.921 9 C 0.091 3.909 10 H 0.015 0.985 11 C -0.206 4.206 12 S -0.111 6.111 13 C -0.201 4.201 14 C -0.078 4.078 15 N -0.260 5.260 16 C -0.046 4.046 17 C -0.217 4.217 18 C -0.161 4.161 19 C -0.163 4.163 20 H 0.077 0.923 21 H 0.099 0.901 22 H 0.091 0.909 23 H 0.150 0.850 24 H 0.112 0.888 25 H 0.052 0.948 26 H 0.128 0.872 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.277 -6.425 2.068 14.010 hybrid contribution -1.106 0.759 0.718 1.522 sum 11.171 -5.666 2.786 12.832 Atomic orbital electron populations 1.69981 1.07588 1.28019 1.51724 1.25561 0.95266 1.01801 0.94325 0.86281 0.79752 0.80642 0.79043 1.19215 1.21407 1.17678 1.21250 0.89730 0.93697 1.49964 0.92107 1.19438 0.93955 0.86721 0.90772 0.98463 1.24002 0.90223 1.02952 1.03398 1.86506 1.10613 1.21511 1.92420 1.23546 1.03667 0.92000 1.00916 1.22358 0.87675 1.02594 0.95193 1.60985 1.02593 1.14544 1.47897 1.23295 0.98611 0.94270 0.88383 1.23646 1.01345 0.98103 0.98571 1.22643 1.02247 0.94842 0.96328 1.23119 1.02345 0.94733 0.96123 0.92260 0.90112 0.90901 0.84975 0.88775 0.94801 0.87158 0.89423 0.89352 0.93784 0.90494 0.89248 0.91561 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.96 21.45 0.30 -56.12 16 2 C 0.03 1.70 5.45 84.65 0.46 2.17 16 3 Si 0.92 44.35 24.68 68.60 1.69 46.05 16 4 H -0.27 -12.46 6.86 99.48 0.68 -11.78 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.25 -11.94 6.38 99.48 0.63 -11.30 16 7 C -0.51 -27.66 8.16 25.60 0.21 -27.45 16 8 H 0.06 3.63 6.05 -2.91 -0.02 3.61 16 9 C 0.20 9.29 1.47 44.33 0.07 9.35 16 10 H 0.00 -0.10 6.57 -2.39 -0.02 -0.12 16 11 C -0.06 -2.52 5.54 72.06 0.40 -2.12 16 12 S -0.34 -12.41 22.40 -56.49 -1.27 -13.67 16 13 C -0.05 -1.49 6.69 72.06 0.48 -1.01 16 14 C 0.05 1.53 3.96 86.47 0.34 1.87 16 15 N -0.54 -20.71 4.43 -848.46 -3.76 -24.46 16 16 C 0.06 2.31 3.44 45.44 0.16 2.46 16 17 C -0.18 -5.60 7.37 31.18 0.23 -5.37 16 18 C -0.12 -3.06 8.09 31.18 0.25 -2.81 16 19 C -0.13 -3.41 7.52 31.12 0.23 -3.18 16 20 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 21 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 22 H 0.07 3.40 4.01 -2.39 -0.01 3.39 16 23 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 24 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.03 1.09 6.92 -2.39 -0.02 1.08 16 26 H 0.11 2.64 5.65 -2.38 -0.01 2.62 16 27 H 0.09 3.98 5.35 -2.39 -0.01 3.97 16 28 H 0.09 2.54 5.86 -2.39 -0.01 2.53 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.10 2.24 6.21 -2.39 -0.01 2.23 16 Total: -1.00 -61.60 255.40 0.80 -60.79 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 1.00 Total: 13.51 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 2.83 Total: -26.09 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -3.46 Total: -80.58 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.69 Total: 46.05 kcal Atomic # 16 Polarization: -12.41 SS G_CDS: -1.27 Total: -13.67 kcal Total: -61.60 0.80 -60.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260959922.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.819 kcal (2) G-P(sol) polarization free energy of solvation -61.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds