Wall clock time and date at job start Mon Mar 30 2020 03:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99769 * 2 1 4 4 H 1.48503 * 109.47114 * 269.99934 * 3 2 1 5 5 H 1.48495 * 109.47321 * 30.00339 * 3 2 1 6 6 H 1.48494 * 109.47090 * 150.00464 * 3 2 1 7 7 C 1.37874 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99994 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00321 * 359.97438 * 7 2 1 10 10 H 1.08990 * 109.53700 * 299.90398 * 9 7 2 11 11 C 1.53120 * 109.49959 * 60.00445 * 9 7 2 12 12 C 1.53125 * 109.15991 * 177.59397 * 11 9 7 13 13 C 1.53037 * 109.27909 * 302.34455 * 12 11 9 14 14 N 1.46848 * 109.52255 * 59.17884 * 13 12 11 15 15 C 1.46895 * 111.00096 * 174.16284 * 14 13 12 16 16 C 1.53048 * 113.14888 * 278.86277 * 15 14 13 17 17 S 1.81498 * 89.86184 * 211.86682 * 16 15 14 18 18 C 1.53041 * 113.15626 * 178.43799 * 15 14 13 19 19 C 1.46850 * 111.19792 * 298.25655 * 14 13 12 20 20 H 0.97001 * 120.00293 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.52496 * 57.69232 * 11 9 7 22 22 H 1.08998 * 109.57505 * 297.53137 * 11 9 7 23 23 H 1.08995 * 109.50481 * 182.40024 * 12 11 9 24 24 H 1.09005 * 109.50065 * 62.28283 * 12 11 9 25 25 H 1.08999 * 109.46050 * 179.19104 * 13 12 11 26 26 H 1.08996 * 109.45911 * 299.16354 * 13 12 11 27 27 H 1.09001 * 112.49859 * 48.64378 * 15 14 13 28 28 H 1.08991 * 113.15104 * 327.11404 * 16 15 14 29 29 H 1.09007 * 113.14549 * 96.59206 * 16 15 14 30 30 H 1.09006 * 113.14530 * 263.40668 * 18 15 14 31 31 H 1.09000 * 113.14881 * 32.83814 * 18 15 14 32 32 H 1.08994 * 109.46251 * 301.73090 * 19 14 13 33 33 H 1.09000 * 109.46066 * 181.75635 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6257 -2.5590 0.8901 11 6 0.3701 -2.5808 -1.2503 12 6 -0.3456 -3.9343 -1.2732 13 6 0.6945 -5.0564 -1.2418 14 7 1.5112 -4.9348 -0.0274 15 6 2.4288 -6.0741 0.1062 16 6 1.7610 -7.3185 0.6959 17 16 3.3319 -7.7871 1.4748 18 6 3.3320 -5.9781 1.3379 19 6 2.2449 -3.6629 -0.0061 20 1 -0.4850 0.8400 0.0004 21 1 0.9909 -2.4819 -2.1407 22 1 -0.3678 -1.7788 -1.2299 23 1 -0.9414 -4.0156 -2.1822 24 1 -0.9961 -4.0167 -0.4024 25 1 0.1878 -6.0214 -1.2435 26 1 1.3360 -4.9816 -2.1199 27 1 2.9779 -6.2774 -0.8131 28 1 0.9783 -7.0837 1.4172 29 1 1.4301 -8.0276 -0.0630 30 1 4.3162 -5.5651 1.1165 31 1 2.8529 -5.4838 2.1831 32 1 2.8791 -3.5946 -0.8900 33 1 2.8642 -3.6159 0.8896 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260990610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:39 Heat of formation + Delta-G solvation = 14.523523 kcal Electronic energy + Delta-G solvation = -14263.312379 eV Core-core repulsion = 12029.292736 eV Total energy + Delta-G solvation = -2234.019643 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.78647 -35.57735 -32.86198 -30.43202 -29.93981 -26.33836 -24.79759 -23.40963 -21.33577 -20.32006 -18.71074 -16.96349 -16.16650 -15.60515 -14.79293 -14.37746 -14.10166 -13.58471 -12.97487 -12.85331 -12.63460 -12.49755 -12.06211 -11.75297 -11.72220 -10.97701 -10.86801 -10.70389 -10.56377 -10.25703 -10.13657 -9.87609 -9.51078 -9.06878 -8.74741 -8.33744 -7.85805 -7.76247 -6.00263 -4.06744 1.84996 1.99457 3.29079 3.36295 3.38955 4.27746 4.41855 4.47334 4.99391 5.15350 5.30024 5.44193 5.48810 5.60409 5.71120 5.72634 5.97176 6.01300 6.18619 6.34744 6.44112 6.65293 6.69968 6.89763 7.15858 7.32954 7.53329 7.67185 7.74144 8.03693 8.13699 8.43978 8.97193 9.57952 11.05649 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.040941 B = 0.006945 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.738976 B = 4030.790840 C = 4549.396531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.035 0.965 11 C -0.112 4.112 12 C -0.117 4.117 13 C 0.063 3.937 14 N -0.525 5.525 15 C 0.074 3.926 16 C -0.063 4.063 17 S -0.317 6.317 18 C -0.066 4.066 19 C 0.066 3.934 20 H 0.260 0.740 21 H 0.030 0.970 22 H 0.091 0.909 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.026 0.974 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.021 0.979 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 -10.558 -0.885 10.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.053 0.947 11 C -0.150 4.150 12 C -0.155 4.155 13 C -0.065 4.065 14 N -0.250 5.250 15 C -0.037 4.037 16 C -0.212 4.212 17 S -0.092 6.092 18 C -0.214 4.214 19 C -0.061 4.061 20 H 0.070 0.930 21 H 0.049 0.951 22 H 0.110 0.890 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.131 0.869 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.133 0.867 32 H 0.040 0.960 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.351 -11.581 -0.013 11.818 hybrid contribution 0.442 1.755 -1.054 2.095 sum 2.794 -9.826 -1.067 10.271 Atomic orbital electron populations 1.69885 1.05843 1.26376 1.50564 1.24924 0.94821 0.98953 0.95072 0.86633 0.79903 0.83642 0.78045 1.20772 1.21223 1.19966 1.21133 0.92826 0.90638 1.50866 0.92833 1.18664 0.92558 0.90188 0.94923 0.94695 1.21673 1.00091 0.94760 0.98485 1.21676 0.97114 0.96346 1.00351 1.22034 0.95620 0.98949 0.89942 1.62327 1.22685 1.01628 1.38398 1.22997 0.92404 0.91568 0.96688 1.24433 0.96725 0.98183 1.01811 1.88814 1.24904 1.11514 1.83970 1.24439 1.03488 0.91835 1.01629 1.22341 0.96662 0.88052 0.99026 0.93021 0.95126 0.89029 0.93390 0.92000 0.92291 0.95601 0.90389 0.86910 0.89234 0.88842 0.86682 0.96044 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.83 11.35 55.43 0.63 -24.20 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.52 -13.74 8.56 -34.44 -0.29 -14.03 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.06 1.33 2.27 -91.69 -0.21 1.12 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.11 -2.55 5.02 -26.60 -0.13 -2.68 16 12 C -0.12 -2.16 6.09 -26.65 -0.16 -2.33 16 13 C 0.06 1.02 5.42 -3.83 -0.02 1.00 16 14 N -0.52 -8.88 4.60 -239.21 -1.10 -9.98 16 15 C 0.07 1.04 2.93 -67.67 -0.20 0.85 16 16 C -0.06 -0.79 7.48 37.18 0.28 -0.51 16 17 S -0.32 -4.36 24.80 -107.50 -2.67 -7.02 16 18 C -0.07 -0.90 6.18 37.18 0.23 -0.67 16 19 C 0.07 1.31 4.49 -3.83 -0.02 1.29 16 20 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 21 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.09 2.35 6.15 -51.93 -0.32 2.04 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.06 0.83 7.91 -51.93 -0.41 0.42 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 28 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 29 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.11 1.62 8.05 -51.93 -0.42 1.21 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 1.21 6.86 -51.93 -0.36 0.86 16 LS Contribution 271.78 15.07 4.10 4.10 Total: -1.00 -26.95 271.78 -9.96 -36.91 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -5.27 Total: -1.33 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -0.62 Total: -14.33 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: -0.47 Total: -34.18 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -4.36 SS G_CDS: -2.67 Total: -7.02 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -26.95 -9.96 -36.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.429 kcal (2) G-P(sol) polarization free energy of solvation -26.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds