Wall clock time and date at job start Mon Mar 30 2020 03:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99769 * 2 1 4 4 H 1.48503 * 109.47114 * 269.99934 * 3 2 1 5 5 H 1.48495 * 109.47321 * 30.00339 * 3 2 1 6 6 H 1.48494 * 109.47090 * 150.00464 * 3 2 1 7 7 C 1.37874 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99994 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00321 * 359.97438 * 7 2 1 10 10 H 1.08990 * 109.53700 * 299.90398 * 9 7 2 11 11 C 1.53120 * 109.49959 * 60.00445 * 9 7 2 12 12 C 1.53125 * 109.15991 * 177.59397 * 11 9 7 13 13 C 1.53037 * 109.27909 * 302.34455 * 12 11 9 14 14 N 1.46848 * 109.52255 * 59.17884 * 13 12 11 15 15 C 1.46895 * 111.00096 * 174.16284 * 14 13 12 16 16 C 1.53048 * 113.14888 * 278.86277 * 15 14 13 17 17 S 1.81498 * 89.86184 * 211.86682 * 16 15 14 18 18 C 1.53041 * 113.15626 * 178.43799 * 15 14 13 19 19 C 1.46850 * 111.19792 * 298.25655 * 14 13 12 20 20 H 0.97001 * 120.00293 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.52496 * 57.69232 * 11 9 7 22 22 H 1.08998 * 109.57505 * 297.53137 * 11 9 7 23 23 H 1.08995 * 109.50481 * 182.40024 * 12 11 9 24 24 H 1.09005 * 109.50065 * 62.28283 * 12 11 9 25 25 H 1.08999 * 109.46050 * 179.19104 * 13 12 11 26 26 H 1.08996 * 109.45911 * 299.16354 * 13 12 11 27 27 H 1.09001 * 112.49859 * 48.64378 * 15 14 13 28 28 H 1.08991 * 113.15104 * 327.11404 * 16 15 14 29 29 H 1.09007 * 113.14549 * 96.59206 * 16 15 14 30 30 H 1.09006 * 113.14530 * 263.40668 * 18 15 14 31 31 H 1.09000 * 113.14881 * 32.83814 * 18 15 14 32 32 H 1.08994 * 109.46251 * 301.73090 * 19 14 13 33 33 H 1.09000 * 109.46066 * 181.75635 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6257 -2.5590 0.8901 11 6 0.3701 -2.5808 -1.2503 12 6 -0.3456 -3.9343 -1.2732 13 6 0.6945 -5.0564 -1.2418 14 7 1.5112 -4.9348 -0.0274 15 6 2.4288 -6.0741 0.1062 16 6 1.7610 -7.3185 0.6959 17 16 3.3319 -7.7871 1.4748 18 6 3.3320 -5.9781 1.3379 19 6 2.2449 -3.6629 -0.0061 20 1 -0.4850 0.8400 0.0004 21 1 0.9909 -2.4819 -2.1407 22 1 -0.3678 -1.7788 -1.2299 23 1 -0.9414 -4.0156 -2.1822 24 1 -0.9961 -4.0167 -0.4024 25 1 0.1878 -6.0214 -1.2435 26 1 1.3360 -4.9816 -2.1199 27 1 2.9779 -6.2774 -0.8131 28 1 0.9783 -7.0837 1.4172 29 1 1.4301 -8.0276 -0.0630 30 1 4.3162 -5.5651 1.1165 31 1 2.8529 -5.4838 2.1831 32 1 2.8791 -3.5946 -0.8900 33 1 2.8642 -3.6159 0.8896 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260990610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:38 Heat of formation + Delta-G solvation = -0.937802 kcal Electronic energy + Delta-G solvation = -14263.982832 eV Core-core repulsion = 12029.292736 eV Total energy + Delta-G solvation = -2234.690096 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.18205 -37.02992 -34.68864 -31.91326 -31.69797 -27.57721 -26.56905 -24.90852 -22.96407 -21.58931 -20.37314 -18.51786 -17.78485 -16.74365 -16.60427 -15.76831 -15.59775 -15.03633 -14.51914 -14.43561 -14.10357 -13.80969 -13.47863 -13.20878 -12.97851 -12.83499 -12.61655 -12.49597 -11.81483 -11.79351 -11.62167 -11.45736 -11.30792 -10.76065 -10.61970 -10.34787 -9.21817 -8.85108 -8.06254 -6.19950 0.79332 0.93354 1.42075 1.43486 1.52842 2.43978 3.03572 3.21181 3.31618 3.93246 4.02462 4.20321 4.33077 4.42229 4.48486 4.50000 4.63869 4.67792 4.77552 4.88148 4.95791 5.02779 5.13918 5.21719 5.43269 5.55535 5.66380 5.96555 6.12864 6.22696 6.29407 6.46738 6.93315 7.48089 8.98126 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.040941 B = 0.006945 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.738976 B = 4030.790840 C = 4549.396531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.052 0.948 9 C 0.053 3.947 10 H -0.001 1.001 11 C -0.107 4.107 12 C -0.110 4.110 13 C 0.065 3.935 14 N -0.531 5.531 15 C 0.075 3.925 16 C -0.050 4.050 17 S -0.328 6.328 18 C -0.065 4.065 19 C 0.081 3.919 20 H 0.260 0.740 21 H 0.022 0.978 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.093 0.907 26 H 0.030 0.970 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.017 0.983 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.573 -11.847 -1.414 12.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.574 4.574 8 H 0.070 0.930 9 C 0.034 3.966 10 H 0.017 0.983 11 C -0.145 4.145 12 C -0.148 4.148 13 C -0.062 4.062 14 N -0.256 5.256 15 C -0.035 4.035 16 C -0.198 4.198 17 S -0.103 6.103 18 C -0.214 4.214 19 C -0.046 4.046 20 H 0.069 0.931 21 H 0.041 0.959 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.111 0.889 26 H 0.048 0.952 27 H 0.106 0.894 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.036 0.964 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.905 -12.889 -0.541 13.223 hybrid contribution 0.260 2.140 -0.870 2.325 sum 3.166 -10.748 -1.411 11.293 Atomic orbital electron populations 1.70028 1.07118 1.26991 1.51324 1.25678 0.95605 1.02185 0.94902 0.85675 0.78812 0.79737 0.78145 1.20257 1.21047 1.19314 1.21538 0.93021 0.92215 1.50591 0.93004 1.18587 0.92998 0.91197 0.93845 0.98290 1.21487 0.99152 0.96446 0.97398 1.21579 0.97527 0.94645 1.01044 1.22048 0.95049 0.99390 0.89734 1.62230 1.23168 1.01202 1.39033 1.23078 0.92296 0.90900 0.97211 1.24373 0.95921 0.97516 1.02033 1.88917 1.25942 1.11228 1.84252 1.24410 1.03717 0.91962 1.01293 1.21970 0.95444 0.88329 0.98874 0.93128 0.95933 0.92535 0.91205 0.92927 0.88896 0.95155 0.89395 0.86871 0.87018 0.88359 0.87381 0.96434 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.49 11.35 21.45 0.24 -52.25 16 2 C 0.02 0.83 5.30 84.65 0.45 1.28 16 3 Si 0.95 43.18 29.54 68.60 2.03 45.20 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.54 -28.99 8.56 25.60 0.22 -28.77 16 8 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 9 C 0.05 2.57 2.27 -11.49 -0.03 2.55 16 10 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 11 C -0.11 -4.92 5.02 30.68 0.15 -4.77 16 12 C -0.11 -3.94 6.09 30.65 0.19 -3.75 16 13 C 0.07 1.96 5.42 86.33 0.47 2.42 16 14 N -0.53 -16.97 4.60 -910.72 -4.19 -21.16 16 15 C 0.08 1.92 2.93 44.95 0.13 2.05 16 16 C -0.05 -1.10 7.48 72.00 0.54 -0.56 16 17 S -0.33 -8.28 24.80 -56.49 -1.40 -9.68 16 18 C -0.07 -1.67 6.18 72.00 0.44 -1.23 16 19 C 0.08 3.20 4.49 86.33 0.39 3.58 16 20 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 21 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.06 3.00 6.15 -2.39 -0.01 2.98 16 23 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 25 H 0.09 2.21 7.91 -2.39 -0.02 2.19 16 26 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.09 2.15 8.13 -2.39 -0.02 2.13 16 28 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.11 2.93 8.05 -2.39 -0.02 2.91 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 2.44 6.86 -2.39 -0.02 2.42 16 Total: -1.00 -58.25 271.78 0.70 -57.55 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 1.06 Total: 7.53 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 2.95 Total: -27.20 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -3.94 Total: -73.41 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.40 Total: -9.68 kcal Total: -58.25 0.70 -57.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.616 kcal (2) G-P(sol) polarization free energy of solvation -58.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds