Wall clock time and date at job start Mon Mar 30 2020 03:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99973 * 2 1 4 4 H 1.48501 * 109.47264 * 269.99904 * 3 2 1 5 5 H 1.48499 * 109.46932 * 30.00109 * 3 2 1 6 6 H 1.48508 * 109.47389 * 150.00096 * 3 2 1 7 7 C 1.37883 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99702 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00115 * 180.02562 * 7 2 1 10 10 H 1.08991 * 109.50757 * 59.92079 * 9 7 2 11 11 C 1.53124 * 109.50079 * 299.80117 * 9 7 2 12 12 C 1.53121 * 109.15811 * 182.40809 * 11 9 7 13 13 C 1.53031 * 109.28023 * 57.65484 * 12 11 9 14 14 N 1.46849 * 109.52617 * 300.82073 * 13 12 11 15 15 C 1.46899 * 110.99926 * 185.83829 * 14 13 12 16 16 C 1.55885 * 110.82265 * 50.79276 * 15 14 13 17 17 S 1.83083 * 82.48198 * 142.75586 * 16 15 14 18 18 C 1.56011 * 110.86779 * 164.39688 * 15 14 13 19 19 C 1.46847 * 111.19741 * 61.74140 * 14 13 12 20 20 H 0.96997 * 120.00743 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.52210 * 302.31143 * 11 9 7 22 22 H 1.08999 * 109.51936 * 62.44229 * 11 9 7 23 23 H 1.09004 * 109.49985 * 177.60199 * 12 11 9 24 24 H 1.09006 * 109.50157 * 297.67067 * 12 11 9 25 25 H 1.09004 * 109.46139 * 180.80504 * 13 12 11 26 26 H 1.09003 * 109.46524 * 60.83737 * 13 12 11 27 27 H 1.08995 * 110.40078 * 287.61480 * 15 14 13 28 28 H 1.09002 * 114.38293 * 29.34369 * 16 15 14 29 29 H 1.09002 * 114.37878 * 256.16644 * 16 15 14 30 30 H 1.09006 * 114.37363 * 103.87349 * 18 15 14 31 31 H 1.09007 * 114.41471 * 330.67648 * 18 15 14 32 32 H 1.09006 * 109.46403 * 58.27203 * 19 14 13 33 33 H 1.08996 * 109.46572 * 178.24656 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8751 -0.6789 0.8901 11 6 4.0232 -0.4769 -1.2514 12 6 5.5532 -0.5339 -1.2734 13 6 6.0049 -1.9956 -1.2359 14 7 5.4908 -2.6372 -0.0192 15 6 6.0188 -4.0009 0.1202 16 6 7.5705 -4.0122 -0.0283 17 16 7.4454 -5.2905 1.2765 18 6 5.8040 -4.5345 1.5703 19 6 4.0225 -2.6366 0.0016 20 1 -0.4851 0.8400 0.0004 21 1 3.6275 -0.9688 -2.1399 22 1 3.6967 0.5629 -1.2347 23 1 5.9218 -0.0622 -2.1843 24 1 5.9495 -0.0075 -0.4050 25 1 7.0941 -2.0392 -1.2371 26 1 5.6198 -2.5174 -2.1121 27 1 5.5549 -4.6643 -0.6097 28 1 8.0597 -3.0914 0.2894 29 1 7.9279 -4.3833 -0.9889 30 1 4.9894 -5.2520 1.6696 31 1 5.7957 -3.7611 2.3384 32 1 3.6466 -3.1553 -0.8804 33 1 3.6717 -3.1458 0.8992 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260990611.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:41 Heat of formation + Delta-G solvation = 22.521507 kcal Electronic energy + Delta-G solvation = -14346.594066 eV Core-core repulsion = 12112.921242 eV Total energy + Delta-G solvation = -2233.672824 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.90541 -35.36471 -32.66894 -30.59992 -30.44103 -27.13336 -24.76258 -23.76196 -21.36660 -20.09922 -18.99336 -17.08161 -16.60622 -15.89129 -14.92332 -14.51716 -13.86909 -13.76857 -13.20703 -13.16762 -12.94710 -12.64562 -12.31767 -12.11315 -11.81148 -11.46920 -11.12218 -11.09849 -10.58980 -10.15305 -10.05983 -9.73290 -9.60790 -9.09731 -8.97384 -8.54162 -8.00701 -7.78874 -6.09394 -4.08944 1.67437 2.06523 3.26305 3.38000 3.40717 4.08879 4.39380 4.40101 4.61512 5.00359 5.21480 5.31752 5.34489 5.42392 5.47975 5.61832 5.73151 5.85142 5.91848 6.08222 6.21372 6.24068 6.40740 6.54790 6.73523 6.78171 7.14238 7.29760 7.43448 7.59459 7.80851 8.48852 8.93415 9.53188 11.03804 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.046242 B = 0.007397 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.366221 B = 3784.433760 C = 4139.750469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.071 3.929 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.516 4.516 8 H 0.072 0.928 9 C 0.021 3.979 10 H 0.036 0.964 11 C -0.124 4.124 12 C -0.119 4.119 13 C 0.060 3.940 14 N -0.534 5.534 15 C 0.058 3.942 16 C -0.057 4.057 17 S -0.331 6.331 18 C -0.045 4.045 19 C 0.075 3.925 20 H 0.264 0.736 21 H 0.056 0.944 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.028 0.972 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.474 -5.314 -1.261 14.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.554 4.554 8 H 0.090 0.910 9 C 0.002 3.998 10 H 0.054 0.946 11 C -0.161 4.161 12 C -0.157 4.157 13 C -0.068 4.068 14 N -0.260 5.260 15 C -0.053 4.053 16 C -0.205 4.205 17 S -0.107 6.107 18 C -0.194 4.194 19 C -0.052 4.052 20 H 0.073 0.927 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.131 0.869 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.046 0.954 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.220 -5.962 -0.360 15.424 hybrid contribution -0.613 1.338 -1.210 1.905 sum 13.607 -4.624 -1.570 14.457 Atomic orbital electron populations 1.69893 1.06318 1.26982 1.50773 1.24983 0.94661 0.99057 0.94373 0.86829 0.80023 0.83479 0.77844 1.20739 1.22586 1.18808 1.20991 0.88745 0.94494 1.51163 0.90963 1.19151 0.95983 0.90947 0.93724 0.94616 1.22038 0.92597 1.00334 1.01139 1.21650 0.98138 0.94988 1.00923 1.22007 0.98737 0.95604 0.90434 1.62417 1.10790 1.14937 1.37841 1.24162 0.92833 0.92300 0.95975 1.24904 0.97877 0.98643 0.99084 1.88375 1.27639 1.45047 1.49614 1.24916 0.94135 1.00905 0.99403 1.22116 0.83220 0.99916 0.99924 0.92654 0.92539 0.93477 0.92687 0.91764 0.91534 0.95199 0.91244 0.86883 0.87691 0.87442 0.86559 0.95351 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 2 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 3 Si 0.89 21.77 24.36 -169.99 -4.14 17.63 16 4 H -0.28 -6.70 6.89 56.52 0.39 -6.31 16 5 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.26 -6.20 6.53 56.52 0.37 -5.83 16 7 C -0.52 -14.10 9.14 -34.44 -0.31 -14.42 16 8 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 9 C 0.02 0.48 1.85 -91.69 -0.17 0.31 16 10 H 0.04 0.86 7.19 -51.93 -0.37 0.48 16 11 C -0.12 -2.58 4.74 -26.60 -0.13 -2.70 16 12 C -0.12 -1.98 6.09 -26.65 -0.16 -2.15 16 13 C 0.06 0.89 5.19 -3.84 -0.02 0.87 16 14 N -0.53 -8.47 4.56 -264.96 -1.21 -9.68 16 15 C 0.06 0.77 2.54 -64.56 -0.16 0.60 16 16 C -0.06 -0.65 7.08 38.70 0.27 -0.37 16 17 S -0.33 -4.34 24.06 -107.50 -2.59 -6.92 16 18 C -0.05 -0.58 7.89 38.77 0.31 -0.27 16 19 C 0.08 1.43 4.58 -3.83 -0.02 1.41 16 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 21 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 22 H 0.05 1.05 3.37 -51.93 -0.17 0.88 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.07 0.82 6.40 -51.93 -0.33 0.48 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 28 H 0.11 1.27 7.70 -51.93 -0.40 0.87 16 29 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.12 1.54 8.14 -51.92 -0.42 1.11 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.30 7.41 -51.93 -0.38 0.92 16 LS Contribution 263.66 15.07 3.97 3.97 Total: -1.00 -29.15 263.66 -8.75 -37.90 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -5.07 Total: -1.57 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -0.49 Total: -14.80 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.44 Total: -36.21 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.14 Total: 17.63 kcal Atomic # 16 Polarization: -4.34 SS G_CDS: -2.59 Total: -6.92 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.15 -8.75 -37.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990611.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.419 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds