Wall clock time and date at job start Mon Mar 30 2020 03:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99973 * 2 1 4 4 H 1.48501 * 109.47264 * 269.99904 * 3 2 1 5 5 H 1.48499 * 109.46932 * 30.00109 * 3 2 1 6 6 H 1.48508 * 109.47389 * 150.00096 * 3 2 1 7 7 C 1.37883 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99702 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00115 * 180.02562 * 7 2 1 10 10 H 1.08991 * 109.50757 * 59.92079 * 9 7 2 11 11 C 1.53124 * 109.50079 * 299.80117 * 9 7 2 12 12 C 1.53121 * 109.15811 * 182.40809 * 11 9 7 13 13 C 1.53031 * 109.28023 * 57.65484 * 12 11 9 14 14 N 1.46849 * 109.52617 * 300.82073 * 13 12 11 15 15 C 1.46899 * 110.99926 * 185.83829 * 14 13 12 16 16 C 1.55885 * 110.82265 * 50.79276 * 15 14 13 17 17 S 1.83083 * 82.48198 * 142.75586 * 16 15 14 18 18 C 1.56011 * 110.86779 * 164.39688 * 15 14 13 19 19 C 1.46847 * 111.19741 * 61.74140 * 14 13 12 20 20 H 0.96997 * 120.00743 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.52210 * 302.31143 * 11 9 7 22 22 H 1.08999 * 109.51936 * 62.44229 * 11 9 7 23 23 H 1.09004 * 109.49985 * 177.60199 * 12 11 9 24 24 H 1.09006 * 109.50157 * 297.67067 * 12 11 9 25 25 H 1.09004 * 109.46139 * 180.80504 * 13 12 11 26 26 H 1.09003 * 109.46524 * 60.83737 * 13 12 11 27 27 H 1.08995 * 110.40078 * 287.61480 * 15 14 13 28 28 H 1.09002 * 114.38293 * 29.34369 * 16 15 14 29 29 H 1.09002 * 114.37878 * 256.16644 * 16 15 14 30 30 H 1.09006 * 114.37363 * 103.87349 * 18 15 14 31 31 H 1.09007 * 114.41471 * 330.67648 * 18 15 14 32 32 H 1.09006 * 109.46403 * 58.27203 * 19 14 13 33 33 H 1.08996 * 109.46572 * 178.24656 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8751 -0.6789 0.8901 11 6 4.0232 -0.4769 -1.2514 12 6 5.5532 -0.5339 -1.2734 13 6 6.0049 -1.9956 -1.2359 14 7 5.4908 -2.6372 -0.0192 15 6 6.0188 -4.0009 0.1202 16 6 7.5705 -4.0122 -0.0283 17 16 7.4454 -5.2905 1.2765 18 6 5.8040 -4.5345 1.5703 19 6 4.0225 -2.6366 0.0016 20 1 -0.4851 0.8400 0.0004 21 1 3.6275 -0.9688 -2.1399 22 1 3.6967 0.5629 -1.2347 23 1 5.9218 -0.0622 -2.1843 24 1 5.9495 -0.0075 -0.4050 25 1 7.0941 -2.0392 -1.2371 26 1 5.6198 -2.5174 -2.1121 27 1 5.5549 -4.6643 -0.6097 28 1 8.0597 -3.0914 0.2894 29 1 7.9279 -4.3833 -0.9889 30 1 4.9894 -5.2520 1.6696 31 1 5.7957 -3.7611 2.3384 32 1 3.6466 -3.1553 -0.8804 33 1 3.6717 -3.1458 0.8992 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260990611.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:41 Heat of formation + Delta-G solvation = 2.903025 kcal Electronic energy + Delta-G solvation = -14347.444787 eV Core-core repulsion = 12112.921242 eV Total energy + Delta-G solvation = -2234.523546 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.24005 -36.76522 -34.56615 -32.12460 -31.91314 -28.23053 -26.55493 -25.17175 -22.87693 -21.33251 -20.52722 -18.83628 -18.01991 -17.00764 -16.63416 -15.84398 -15.49649 -15.09229 -14.78633 -14.59135 -14.29520 -13.97016 -13.74019 -13.35178 -12.97195 -12.88735 -12.75616 -12.46347 -12.23765 -11.90898 -11.73540 -11.39976 -11.07253 -10.85548 -10.65585 -10.45555 -9.27282 -8.80513 -8.29684 -6.33183 0.69840 1.10002 1.30734 1.37383 1.48164 2.33476 2.89559 3.06569 3.38243 3.57002 3.99752 4.03729 4.17206 4.29806 4.41866 4.48402 4.53735 4.63239 4.65536 4.73530 4.83579 4.85996 5.00333 5.05359 5.17236 5.25902 5.46460 5.63823 5.74439 6.10642 6.17985 6.34258 6.74673 7.32721 8.87157 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.046242 B = 0.007397 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.366221 B = 3784.433760 C = 4139.750469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.012 3.988 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.302 1.302 6 H -0.246 1.246 7 C -0.519 4.519 8 H 0.032 0.968 9 C 0.021 3.979 10 H 0.026 0.974 11 C -0.124 4.124 12 C -0.114 4.114 13 C 0.058 3.942 14 N -0.536 5.536 15 C 0.057 3.943 16 C -0.037 4.037 17 S -0.356 6.356 18 C -0.045 4.045 19 C 0.087 3.913 20 H 0.265 0.735 21 H 0.047 0.953 22 H 0.033 0.967 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.032 0.968 27 H 0.070 0.930 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.017 0.983 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.529 -4.847 -1.991 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.230 1.230 6 H -0.170 1.170 7 C -0.558 4.558 8 H 0.051 0.949 9 C 0.002 3.998 10 H 0.044 0.956 11 C -0.162 4.162 12 C -0.152 4.152 13 C -0.069 4.069 14 N -0.261 5.261 15 C -0.053 4.053 16 C -0.185 4.185 17 S -0.132 6.132 18 C -0.193 4.193 19 C -0.040 4.040 20 H 0.074 0.926 21 H 0.066 0.934 22 H 0.051 0.949 23 H 0.102 0.898 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.141 0.859 29 H 0.148 0.852 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.036 0.964 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.309 -5.515 -1.095 18.200 hybrid contribution -1.605 1.088 -0.972 2.170 sum 15.704 -4.426 -2.067 16.446 Atomic orbital electron populations 1.70046 1.08238 1.27976 1.52927 1.25850 0.95369 1.02999 0.94250 0.85798 0.79151 0.78635 0.78560 1.19396 1.22961 1.16967 1.21357 0.91614 0.92912 1.49868 0.94918 1.19062 0.92739 0.93616 0.94430 0.95576 1.21941 0.96171 0.98792 0.99307 1.21626 0.94368 0.96710 1.02448 1.22124 1.00787 0.94165 0.89855 1.62367 1.08178 1.16790 1.38797 1.24316 0.94311 0.90659 0.96045 1.25015 0.95769 0.98281 0.99464 1.88516 1.27807 1.46081 1.50758 1.24922 0.94312 1.00868 0.99245 1.21778 0.85826 0.97221 0.99208 0.92625 0.93382 0.94853 0.89835 0.91690 0.87881 0.94945 0.91208 0.85897 0.85245 0.86996 0.87044 0.96433 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 2 C 0.01 0.70 5.45 84.66 0.46 1.17 16 3 Si 0.95 45.02 24.36 68.60 1.67 46.69 16 4 H -0.27 -12.04 6.89 99.48 0.69 -11.36 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.25 -10.82 6.53 99.48 0.65 -10.17 16 7 C -0.52 -29.24 9.14 25.60 0.23 -29.01 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 9 C 0.02 0.93 1.85 -11.49 -0.02 0.91 16 10 H 0.03 1.23 7.19 -2.39 -0.02 1.21 16 11 C -0.12 -4.97 4.74 30.68 0.15 -4.82 16 12 C -0.11 -3.35 6.09 30.64 0.19 -3.16 16 13 C 0.06 1.48 5.19 86.32 0.45 1.93 16 14 N -0.54 -15.58 4.56 -992.18 -4.53 -20.11 16 15 C 0.06 1.36 2.54 46.96 0.12 1.48 16 16 C -0.04 -0.70 7.08 72.98 0.52 -0.19 16 17 S -0.36 -8.50 24.06 -56.49 -1.36 -9.86 16 18 C -0.04 -1.09 7.89 73.03 0.58 -0.51 16 19 C 0.09 3.28 4.58 86.33 0.40 3.68 16 20 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 21 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.03 1.41 3.37 -2.39 -0.01 1.40 16 23 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 25 H 0.10 1.93 6.40 -2.39 -0.02 1.92 16 26 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 1.71 8.12 -2.39 -0.02 1.69 16 28 H 0.12 2.15 7.70 -2.39 -0.02 2.13 16 29 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 31 H 0.11 2.80 8.14 -2.38 -0.02 2.78 16 32 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.06 2.38 7.41 -2.39 -0.02 2.37 16 Total: -1.00 -64.36 263.66 0.14 -64.21 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.00 Total: 6.85 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 3.06 Total: -28.53 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -4.23 Total: -79.37 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.67 Total: 46.69 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.36 Total: -9.86 kcal Total: -64.36 0.14 -64.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990611.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.116 kcal (2) G-P(sol) polarization free energy of solvation -64.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds