Wall clock time and date at job start Mon Mar 30 2020 03:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00211 * 2 1 4 4 H 1.48496 * 109.47169 * 269.99959 * 3 2 1 5 5 H 1.48501 * 109.47263 * 29.99820 * 3 2 1 6 6 H 1.48506 * 109.47182 * 149.99829 * 3 2 1 7 7 C 1.37885 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99760 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99903 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.87178 * 62.39027 * 9 7 2 11 11 C 1.55133 * 110.98976 * 298.54632 * 9 7 2 12 12 C 1.54324 * 103.01757 * 206.21684 * 11 9 7 13 13 N 1.47438 * 107.22992 * 22.28426 * 12 11 9 14 14 C 1.46904 * 110.99771 * 123.26068 * 13 12 11 15 15 C 1.53001 * 109.47317 * 69.87122 * 14 13 12 16 16 C 1.53046 * 113.19169 * 84.49005 * 15 14 13 17 17 S 1.81418 * 89.88880 * 148.15565 * 16 15 14 18 18 C 1.53040 * 113.15085 * 184.88225 * 15 14 13 19 19 C 1.47835 * 108.57135 * 0.98961 * 13 12 11 20 20 H 0.96998 * 119.99914 * 0.02562 * 1 2 3 21 21 H 1.08996 * 110.71023 * 87.83719 * 11 9 7 22 22 H 1.09000 * 110.70630 * 324.59919 * 11 9 7 23 23 H 1.09005 * 109.88886 * 262.87701 * 12 11 9 24 24 H 1.08999 * 109.88587 * 141.69352 * 12 11 9 25 25 H 1.08997 * 109.47181 * 309.87024 * 14 13 12 26 26 H 1.09003 * 109.46935 * 189.87229 * 14 13 12 27 27 H 1.09002 * 112.49682 * 314.66591 * 15 14 13 28 28 H 1.09000 * 113.14295 * 263.41146 * 16 15 14 29 29 H 1.08994 * 113.15086 * 32.89193 * 16 15 14 30 30 H 1.09001 * 113.14802 * 327.06778 * 18 15 14 31 31 H 1.09002 * 113.14878 * 96.50904 * 18 15 14 32 32 H 1.09003 * 110.37465 * 94.73658 * 19 13 12 33 33 H 1.08999 * 110.37465 * 217.07608 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6484 -2.5997 -0.9022 11 6 0.3732 -2.6341 1.2725 12 6 0.2522 -4.1622 1.4509 13 7 1.3905 -4.7761 0.7429 14 6 2.1837 -5.6160 1.6503 15 6 1.3800 -6.8632 2.0241 16 6 1.5013 -7.9893 0.9948 17 16 1.3262 -9.2152 2.3206 18 6 2.0811 -7.7418 3.0626 19 6 2.2178 -3.6991 0.1588 20 1 -0.4850 0.8400 -0.0004 21 1 -0.6074 -2.1858 1.1134 22 1 0.8691 -2.1838 2.1325 23 1 -0.6855 -4.5127 1.0196 24 1 0.2935 -4.4163 2.5101 25 1 2.4208 -5.0526 2.5528 26 1 3.1076 -5.9142 1.1548 27 1 0.3477 -6.6311 2.2859 28 1 0.6771 -8.0085 0.2818 29 1 2.4757 -8.0213 0.5075 30 1 3.1674 -7.7262 2.9740 31 1 1.7432 -7.5535 4.0817 32 1 3.0356 -3.4414 0.8319 33 1 2.6066 -4.0039 -0.8128 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260992963.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:45 Heat of formation + Delta-G solvation = 16.028794 kcal Electronic energy + Delta-G solvation = -13892.618715 eV Core-core repulsion = 11658.664346 eV Total energy + Delta-G solvation = -2233.954370 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.59930 -36.33850 -32.95355 -30.26664 -28.26642 -26.30440 -25.83757 -23.83922 -21.03406 -19.75418 -19.22575 -16.75149 -16.23981 -15.69619 -15.19908 -14.50385 -14.29957 -13.59464 -13.20902 -12.98674 -12.56939 -12.28250 -12.08005 -11.92551 -11.35312 -11.04883 -10.93533 -10.86554 -10.65414 -10.51962 -10.32702 -9.88791 -9.62303 -9.25430 -8.87264 -8.42392 -7.86631 -7.66206 -6.05326 -4.09031 1.75758 1.91937 3.27899 3.34939 3.37423 4.19530 4.40393 4.62338 4.86826 5.03417 5.25056 5.28389 5.35293 5.39756 5.62373 5.65055 5.75147 5.89684 6.07948 6.20511 6.24271 6.45910 6.50374 6.80422 7.10419 7.15163 7.62067 7.63988 7.71551 7.84471 7.98886 8.38694 8.93053 9.55597 11.04217 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.077756 B = 0.005132 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.013792 B = 5454.646638 C = 5555.073423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.049 3.951 10 H 0.036 0.964 11 C -0.117 4.117 12 C 0.036 3.964 13 N -0.532 5.532 14 C 0.064 3.936 15 C -0.083 4.083 16 C -0.058 4.058 17 S -0.324 6.324 18 C -0.075 4.075 19 C 0.046 3.954 20 H 0.260 0.740 21 H 0.073 0.927 22 H 0.047 0.953 23 H 0.063 0.937 24 H 0.037 0.963 25 H 0.039 0.961 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.036 0.964 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 -11.634 4.418 12.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.029 3.971 10 H 0.054 0.946 11 C -0.156 4.156 12 C -0.091 4.091 13 N -0.256 5.256 14 C -0.067 4.067 15 C -0.103 4.103 16 C -0.206 4.206 17 S -0.098 6.098 18 C -0.224 4.224 19 C -0.081 4.081 20 H 0.070 0.930 21 H 0.092 0.908 22 H 0.066 0.934 23 H 0.081 0.919 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.128 0.872 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.054 0.946 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.180 -13.226 4.324 14.084 hybrid contribution 1.119 2.385 0.494 2.680 sum 3.299 -10.841 4.818 12.314 Atomic orbital electron populations 1.69959 1.05904 1.26531 1.50199 1.24961 0.94833 0.99035 0.94934 0.86619 0.79845 0.83536 0.78148 1.20625 1.21255 1.19967 1.21044 0.92778 0.90356 1.51321 0.92618 1.19725 0.92156 0.91080 0.94092 0.94560 1.22683 1.02224 0.90820 0.99881 1.22953 0.94013 0.96886 0.95262 1.63592 1.09226 1.21676 1.31153 1.22196 0.95824 0.93065 0.95662 1.22529 1.01396 0.94269 0.92126 1.24340 1.06053 0.91264 0.98986 1.88903 1.80901 1.26186 1.13823 1.24364 1.03020 0.91756 1.03243 1.23170 0.96063 0.91257 0.97572 0.93008 0.90831 0.93446 0.91892 0.94478 0.94238 0.90984 0.87157 0.88343 0.87948 0.87889 0.88756 0.94572 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.04 12.12 55.43 0.67 -24.37 16 2 C 0.06 1.75 5.34 -17.82 -0.10 1.66 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.85 8.55 -34.44 -0.29 -14.14 16 8 H 0.06 1.47 7.79 -52.48 -0.41 1.06 16 9 C 0.05 1.18 2.96 -89.64 -0.26 0.92 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.12 -2.65 5.64 -24.91 -0.14 -2.80 16 12 C 0.04 0.67 6.06 -2.84 -0.02 0.65 16 13 N -0.53 -9.31 5.16 -231.25 -1.19 -10.50 16 14 C 0.06 0.88 4.31 -3.82 -0.02 0.86 16 15 C -0.08 -0.99 3.33 -90.57 -0.30 -1.29 16 16 C -0.06 -0.68 7.49 37.18 0.28 -0.40 16 17 S -0.32 -4.08 24.79 -107.50 -2.67 -6.74 16 18 C -0.07 -0.79 7.49 37.18 0.28 -0.51 16 19 C 0.05 0.93 6.13 -2.30 -0.01 0.92 16 20 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 21 H 0.07 1.81 7.53 -51.93 -0.39 1.42 16 22 H 0.05 1.12 8.03 -51.93 -0.42 0.70 16 23 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.04 0.61 7.10 -51.93 -0.37 0.24 16 25 H 0.04 0.56 7.96 -51.93 -0.41 0.15 16 26 H 0.07 0.92 7.83 -51.93 -0.41 0.52 16 27 H 0.11 1.41 7.21 -51.93 -0.37 1.04 16 28 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.10 1.09 7.95 -51.93 -0.41 0.68 16 30 H 0.10 0.95 8.12 -51.93 -0.42 0.53 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.04 0.73 7.70 -51.93 -0.40 0.33 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 276.47 15.07 4.17 4.17 Total: -1.00 -27.58 276.47 -9.89 -37.47 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -5.26 Total: -1.76 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -0.59 Total: -14.12 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.52 Total: -34.87 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -4.08 SS G_CDS: -2.67 Total: -6.74 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.58 -9.89 -37.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992963.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.500 kcal (2) G-P(sol) polarization free energy of solvation -27.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds