Wall clock time and date at job start Mon Mar 30 2020 03:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00211 * 2 1 4 4 H 1.48496 * 109.47169 * 269.99959 * 3 2 1 5 5 H 1.48501 * 109.47263 * 29.99820 * 3 2 1 6 6 H 1.48506 * 109.47182 * 149.99829 * 3 2 1 7 7 C 1.37885 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99760 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99903 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.87178 * 62.39027 * 9 7 2 11 11 C 1.55133 * 110.98976 * 298.54632 * 9 7 2 12 12 C 1.54324 * 103.01757 * 206.21684 * 11 9 7 13 13 N 1.47438 * 107.22992 * 22.28426 * 12 11 9 14 14 C 1.46904 * 110.99771 * 123.26068 * 13 12 11 15 15 C 1.53001 * 109.47317 * 69.87122 * 14 13 12 16 16 C 1.53046 * 113.19169 * 84.49005 * 15 14 13 17 17 S 1.81418 * 89.88880 * 148.15565 * 16 15 14 18 18 C 1.53040 * 113.15085 * 184.88225 * 15 14 13 19 19 C 1.47835 * 108.57135 * 0.98961 * 13 12 11 20 20 H 0.96998 * 119.99914 * 0.02562 * 1 2 3 21 21 H 1.08996 * 110.71023 * 87.83719 * 11 9 7 22 22 H 1.09000 * 110.70630 * 324.59919 * 11 9 7 23 23 H 1.09005 * 109.88886 * 262.87701 * 12 11 9 24 24 H 1.08999 * 109.88587 * 141.69352 * 12 11 9 25 25 H 1.08997 * 109.47181 * 309.87024 * 14 13 12 26 26 H 1.09003 * 109.46935 * 189.87229 * 14 13 12 27 27 H 1.09002 * 112.49682 * 314.66591 * 15 14 13 28 28 H 1.09000 * 113.14295 * 263.41146 * 16 15 14 29 29 H 1.08994 * 113.15086 * 32.89193 * 16 15 14 30 30 H 1.09001 * 113.14802 * 327.06778 * 18 15 14 31 31 H 1.09002 * 113.14878 * 96.50904 * 18 15 14 32 32 H 1.09003 * 110.37465 * 94.73658 * 19 13 12 33 33 H 1.08999 * 110.37465 * 217.07608 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6484 -2.5997 -0.9022 11 6 0.3732 -2.6341 1.2725 12 6 0.2522 -4.1622 1.4509 13 7 1.3905 -4.7761 0.7429 14 6 2.1837 -5.6160 1.6503 15 6 1.3800 -6.8632 2.0241 16 6 1.5013 -7.9893 0.9948 17 16 1.3262 -9.2152 2.3206 18 6 2.0811 -7.7418 3.0626 19 6 2.2178 -3.6991 0.1588 20 1 -0.4850 0.8400 -0.0004 21 1 -0.6074 -2.1858 1.1134 22 1 0.8691 -2.1838 2.1325 23 1 -0.6855 -4.5127 1.0196 24 1 0.2935 -4.4163 2.5101 25 1 2.4208 -5.0526 2.5528 26 1 3.1076 -5.9142 1.1548 27 1 0.3477 -6.6311 2.2859 28 1 0.6771 -8.0085 0.2818 29 1 2.4757 -8.0213 0.5075 30 1 3.1674 -7.7262 2.9740 31 1 1.7432 -7.5535 4.0817 32 1 3.0356 -3.4414 0.8319 33 1 2.6066 -4.0039 -0.8128 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260992963.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:45 Heat of formation + Delta-G solvation = -0.112808 kcal Electronic energy + Delta-G solvation = -13893.318668 eV Core-core repulsion = 11658.664346 eV Total energy + Delta-G solvation = -2234.654322 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.99890 -37.55022 -34.85490 -31.93577 -29.95543 -27.41427 -27.14227 -25.55423 -22.33601 -21.44588 -20.62343 -18.49979 -17.40478 -16.85394 -16.78948 -16.32858 -15.68604 -14.79660 -14.47472 -14.27759 -13.91063 -13.80070 -13.46872 -13.22739 -12.98451 -12.79938 -12.63696 -12.40117 -12.07992 -11.90523 -11.62055 -11.44558 -11.18297 -10.86743 -10.83601 -10.48113 -9.10547 -8.82000 -8.12587 -6.23200 0.89369 0.99746 1.42359 1.43312 1.52973 2.43241 3.07623 3.19262 3.58705 3.81811 4.02944 4.16172 4.34037 4.41648 4.46729 4.53206 4.56963 4.67525 4.73046 4.77802 4.86513 4.92261 5.09128 5.22967 5.29015 5.38637 5.62071 5.85547 5.94569 6.08534 6.37297 6.39092 6.87029 7.45079 8.96333 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.077756 B = 0.005132 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.013792 B = 5454.646638 C = 5555.073423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.533 4.533 8 H 0.056 0.944 9 C 0.036 3.964 10 H 0.001 0.999 11 C -0.110 4.110 12 C 0.049 3.951 13 N -0.532 5.532 14 C 0.065 3.935 15 C -0.078 4.078 16 C -0.049 4.049 17 S -0.369 6.369 18 C -0.056 4.056 19 C 0.060 3.940 20 H 0.260 0.740 21 H 0.044 0.956 22 H 0.033 0.967 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.043 0.957 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.105 0.895 32 H 0.038 0.962 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.368 -12.249 5.169 13.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.572 4.572 8 H 0.074 0.926 9 C 0.017 3.983 10 H 0.020 0.980 11 C -0.149 4.149 12 C -0.079 4.079 13 N -0.256 5.256 14 C -0.066 4.066 15 C -0.098 4.098 16 C -0.197 4.197 17 S -0.142 6.142 18 C -0.205 4.205 19 C -0.067 4.067 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.051 0.949 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.107 0.893 27 H 0.121 0.879 28 H 0.111 0.889 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.124 0.876 32 H 0.056 0.944 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.571 -13.860 5.078 15.187 hybrid contribution 0.683 2.563 0.242 2.663 sum 4.254 -11.297 5.319 13.191 Atomic orbital electron populations 1.70091 1.07304 1.27230 1.51124 1.25748 0.95620 1.02429 0.94687 0.85614 0.78775 0.79385 0.78236 1.20175 1.21105 1.19078 1.21425 0.93042 0.91742 1.50974 0.92575 1.19697 0.93025 0.92310 0.93288 0.98038 1.22475 1.00029 0.93977 0.98437 1.22812 0.94728 0.93440 0.96904 1.63569 1.09115 1.20596 1.32354 1.22291 0.96192 0.92917 0.95180 1.22420 1.00924 0.93513 0.92955 1.24364 1.06612 0.90261 0.98501 1.89146 1.81569 1.27851 1.15684 1.24365 1.03799 0.89119 1.03204 1.22916 0.95201 0.90285 0.98304 0.93090 0.93694 0.94860 0.91557 0.92065 0.93865 0.89338 0.87903 0.88862 0.86609 0.86003 0.87612 0.94361 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.92 12.12 21.45 0.26 -52.66 16 2 C 0.01 0.78 5.34 84.66 0.45 1.23 16 3 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.53 -28.83 8.55 25.60 0.22 -28.61 16 8 H 0.06 2.95 7.79 -2.91 -0.02 2.93 16 9 C 0.04 1.77 2.96 -10.16 -0.03 1.74 16 10 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 11 C -0.11 -5.05 5.64 31.77 0.18 -4.87 16 12 C 0.05 1.73 6.06 86.65 0.53 2.25 16 13 N -0.53 -17.54 5.16 -885.55 -4.57 -22.11 16 14 C 0.06 1.58 4.31 86.30 0.37 1.95 16 15 C -0.08 -1.62 3.33 -10.76 -0.04 -1.65 16 16 C -0.05 -1.02 7.49 72.00 0.54 -0.48 16 17 S -0.37 -8.55 24.79 -56.49 -1.40 -9.95 16 18 C -0.06 -1.00 7.49 72.00 0.54 -0.46 16 19 C 0.06 2.36 6.13 86.77 0.53 2.89 16 20 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 21 H 0.04 2.28 7.53 -2.39 -0.02 2.26 16 22 H 0.03 1.57 8.03 -2.39 -0.02 1.55 16 23 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 24 H 0.06 1.87 7.10 -2.39 -0.02 1.86 16 25 H 0.04 1.07 7.96 -2.39 -0.02 1.05 16 26 H 0.09 1.92 7.83 -2.39 -0.02 1.90 16 27 H 0.10 2.35 7.21 -2.39 -0.02 2.34 16 28 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.12 2.10 7.95 -2.39 -0.02 2.08 16 30 H 0.12 1.75 8.12 -2.39 -0.02 1.73 16 31 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.48 7.70 -2.39 -0.02 1.46 16 33 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -59.48 276.47 0.68 -58.80 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.06 Total: 7.01 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: 3.29 Total: -26.01 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -4.31 Total: -74.77 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.40 Total: -9.95 kcal Total: -59.48 0.68 -58.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992963.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.692 kcal (2) G-P(sol) polarization free energy of solvation -59.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds