Wall clock time and date at job start Mon Mar 30 2020 03:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99734 * 2 1 4 4 H 1.48497 * 109.47533 * 270.00186 * 3 2 1 5 5 H 1.48503 * 109.47295 * 30.00272 * 3 2 1 6 6 H 1.48503 * 109.47111 * 150.00374 * 3 2 1 7 7 C 1.37869 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00214 * 359.97438 * 7 2 1 9 9 C 1.50709 * 120.00335 * 179.97438 * 7 2 1 10 10 H 1.09000 * 112.78316 * 49.18727 * 9 7 2 11 11 C 1.53512 * 113.47644 * 278.38113 * 9 7 2 12 12 C 1.53507 * 83.57509 * 219.20640 * 11 9 7 13 13 N 1.47473 * 113.47779 * 179.97438 * 9 7 2 14 14 C 1.46901 * 111.00313 * 253.46870 * 13 9 7 15 15 C 1.53006 * 109.46961 * 79.29355 * 14 13 9 16 16 C 1.52996 * 109.47087 * 174.94351 * 15 14 13 17 17 C 1.53047 * 113.15187 * 275.55181 * 16 15 14 18 18 S 1.81499 * 89.86158 * 211.86897 * 17 16 15 19 19 C 1.53038 * 113.15063 * 175.12238 * 16 15 14 20 20 H 0.97000 * 120.00078 * 359.97438 * 1 2 3 21 21 H 1.08998 * 114.16892 * 105.55571 * 11 9 7 22 22 H 1.09002 * 114.34136 * 332.86914 * 11 9 7 23 23 H 1.08997 * 113.47826 * 271.25850 * 12 11 9 24 24 H 1.09001 * 113.52990 * 140.79783 * 12 11 9 25 25 H 1.08998 * 109.46709 * 319.30010 * 14 13 9 26 26 H 1.08999 * 109.47360 * 199.29305 * 14 13 9 27 27 H 1.08995 * 109.46931 * 294.94897 * 15 14 13 28 28 H 1.08999 * 109.46642 * 54.94333 * 15 14 13 29 29 H 1.09004 * 112.49863 * 45.33429 * 16 15 14 30 30 H 1.09001 * 113.14668 * 327.10711 * 17 16 15 31 31 H 1.08998 * 113.15232 * 96.59469 * 17 16 15 32 32 H 1.09007 * 113.14763 * 263.40369 * 19 16 15 33 33 H 1.08999 * 113.15482 * 32.88717 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.9340 -0.5373 0.7595 11 6 4.1226 -0.9884 -1.3943 12 6 5.1385 -2.0341 -0.9138 13 7 4.0991 -2.5466 -0.0010 14 6 4.6673 -2.8738 1.3135 15 6 3.5438 -3.2882 2.2659 16 6 4.1457 -3.7493 3.5947 17 6 4.5783 -5.2173 3.5822 18 16 4.1795 -5.3453 5.3483 19 6 3.0894 -4.0720 4.6540 20 1 -0.4850 0.8400 0.0004 21 1 4.5449 0.0036 -1.5545 22 1 3.4906 -1.3249 -2.2162 23 1 5.9951 -1.6017 -0.3967 24 1 5.4281 -2.7466 -1.6862 25 1 5.1802 -1.9999 1.7153 26 1 5.3762 -3.6951 1.2088 27 1 2.8841 -2.4385 2.4411 28 1 2.9742 -4.1048 1.8222 29 1 4.9235 -3.0764 3.9561 30 1 3.9464 -5.8449 2.9538 31 1 5.6395 -5.3496 3.3715 32 1 2.9044 -3.2457 5.3404 33 1 2.1700 -4.4785 4.2325 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261010731.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:11 Heat of formation + Delta-G solvation = 49.780913 kcal Electronic energy + Delta-G solvation = -13962.807734 eV Core-core repulsion = 11730.316967 eV Total energy + Delta-G solvation = -2232.490768 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.25198 -37.10524 -32.50436 -31.30312 -27.54103 -26.28554 -26.24519 -22.52899 -21.97435 -20.16637 -18.77000 -16.96084 -16.37497 -15.63442 -15.26888 -14.85812 -13.99268 -13.70614 -13.20165 -13.01018 -12.90145 -12.43868 -12.23363 -11.92029 -11.56414 -11.15523 -10.99370 -10.80747 -10.65747 -10.39688 -10.18286 -10.09007 -9.69416 -9.52710 -9.13995 -8.57230 -7.93733 -7.80583 -6.09130 -4.06985 1.82655 1.97243 3.25086 3.32104 3.33557 4.37274 4.38273 4.66161 4.93922 5.03396 5.18055 5.35045 5.40461 5.42825 5.57790 5.61521 5.64427 5.73756 5.89185 6.04447 6.09387 6.17686 6.38809 6.50902 6.57139 6.63944 6.77969 7.06033 7.13681 7.67733 8.01056 8.58332 9.00896 9.53509 11.03654 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.031382 B = 0.007081 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.019117 B = 3953.407005 C = 4495.000306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.870 3.130 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.490 4.490 8 H 0.082 0.918 9 C 0.136 3.864 10 H 0.037 0.963 11 C -0.157 4.157 12 C -0.008 4.008 13 N -0.463 5.463 14 C 0.029 3.971 15 C -0.098 4.098 16 C -0.089 4.089 17 C -0.069 4.069 18 S -0.330 6.330 19 C -0.069 4.069 20 H 0.264 0.736 21 H 0.049 0.951 22 H 0.089 0.911 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.030 0.970 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.612 -5.276 4.852 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.129 4.129 3 Si 0.697 3.303 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.528 4.528 8 H 0.100 0.900 9 C 0.028 3.972 10 H 0.054 0.946 11 C -0.196 4.196 12 C -0.137 4.137 13 N -0.185 5.185 14 C -0.100 4.100 15 C -0.138 4.138 16 C -0.109 4.109 17 C -0.218 4.218 18 S -0.103 6.103 19 C -0.217 4.217 20 H 0.074 0.926 21 H 0.068 0.932 22 H 0.108 0.892 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.394 -6.491 5.972 12.886 hybrid contribution 0.702 2.086 -0.546 2.268 sum 10.097 -4.405 5.426 12.279 Atomic orbital electron populations 1.69887 1.06111 1.26836 1.50885 1.24872 0.94604 0.98699 0.94741 0.86956 0.80271 0.84311 0.78733 1.20054 1.21409 1.19247 1.20786 0.87748 0.94608 1.49649 0.90016 1.21411 0.97490 0.86041 0.92265 0.94562 1.23488 0.97833 0.96574 1.01694 1.23683 0.94719 0.97715 0.97624 1.68975 1.15905 1.27056 1.06593 1.22492 0.96348 0.99125 0.92047 1.21472 0.98101 1.03046 0.91225 1.22531 0.97006 0.94934 0.96468 1.24473 1.05648 0.99678 0.91958 1.88863 1.50354 1.56403 1.14713 1.24400 1.00498 0.98176 0.98660 0.92642 0.93230 0.89248 0.93110 0.91156 0.95211 0.92234 0.89487 0.90676 0.87722 0.87611 0.88938 0.88630 0.87432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.96 55.43 0.77 -25.87 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 20.72 26.93 -169.99 -4.58 16.14 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.09 6.27 56.52 0.35 -5.73 16 7 C -0.49 -13.18 9.52 -34.44 -0.33 -13.50 16 8 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 9 C 0.14 3.07 1.74 -72.59 -0.13 2.95 16 10 H 0.04 0.84 6.09 -51.93 -0.32 0.53 16 11 C -0.16 -3.20 7.20 -26.20 -0.19 -3.39 16 12 C -0.01 -0.14 7.71 -7.53 -0.06 -0.20 16 13 N -0.46 -9.16 6.16 -237.87 -1.46 -10.63 16 14 C 0.03 0.48 4.75 -3.82 -0.02 0.46 16 15 C -0.10 -1.53 5.11 -26.73 -0.14 -1.67 16 16 C -0.09 -1.11 3.31 -90.58 -0.30 -1.41 16 17 C -0.07 -0.81 7.49 37.18 0.28 -0.53 16 18 S -0.33 -4.40 24.80 -107.50 -2.67 -7.07 16 19 C -0.07 -0.86 7.50 37.18 0.28 -0.58 16 20 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 21 H 0.05 0.95 7.91 -51.93 -0.41 0.54 16 22 H 0.09 1.89 8.12 -51.93 -0.42 1.47 16 23 H 0.05 0.81 7.85 -51.93 -0.41 0.40 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.03 0.48 7.55 -51.93 -0.39 0.09 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.09 1.60 7.88 -51.93 -0.41 1.19 16 28 H 0.07 1.21 7.89 -51.93 -0.41 0.80 16 29 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 30 H 0.11 1.19 7.95 -51.93 -0.41 0.78 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.11 1.31 8.12 -51.93 -0.42 0.89 16 LS Contribution 278.54 15.07 4.20 4.20 Total: -1.00 -28.74 278.54 -9.75 -38.49 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.32 Total: 0.69 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -0.70 Total: -15.95 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.69 Total: -36.50 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.58 Total: 16.14 kcal Atomic # 16 Polarization: -4.40 SS G_CDS: -2.67 Total: -7.07 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.74 -9.75 -38.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261010731.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.271 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds