Wall clock time and date at job start Mon Mar 30 2020 03:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99734 * 2 1 4 4 H 1.48497 * 109.47533 * 270.00186 * 3 2 1 5 5 H 1.48503 * 109.47295 * 30.00272 * 3 2 1 6 6 H 1.48503 * 109.47111 * 150.00374 * 3 2 1 7 7 C 1.37869 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00214 * 359.97438 * 7 2 1 9 9 C 1.50709 * 120.00335 * 179.97438 * 7 2 1 10 10 H 1.09000 * 112.78316 * 49.18727 * 9 7 2 11 11 C 1.53512 * 113.47644 * 278.38113 * 9 7 2 12 12 C 1.53507 * 83.57509 * 219.20640 * 11 9 7 13 13 N 1.47473 * 113.47779 * 179.97438 * 9 7 2 14 14 C 1.46901 * 111.00313 * 253.46870 * 13 9 7 15 15 C 1.53006 * 109.46961 * 79.29355 * 14 13 9 16 16 C 1.52996 * 109.47087 * 174.94351 * 15 14 13 17 17 C 1.53047 * 113.15187 * 275.55181 * 16 15 14 18 18 S 1.81499 * 89.86158 * 211.86897 * 17 16 15 19 19 C 1.53038 * 113.15063 * 175.12238 * 16 15 14 20 20 H 0.97000 * 120.00078 * 359.97438 * 1 2 3 21 21 H 1.08998 * 114.16892 * 105.55571 * 11 9 7 22 22 H 1.09002 * 114.34136 * 332.86914 * 11 9 7 23 23 H 1.08997 * 113.47826 * 271.25850 * 12 11 9 24 24 H 1.09001 * 113.52990 * 140.79783 * 12 11 9 25 25 H 1.08998 * 109.46709 * 319.30010 * 14 13 9 26 26 H 1.08999 * 109.47360 * 199.29305 * 14 13 9 27 27 H 1.08995 * 109.46931 * 294.94897 * 15 14 13 28 28 H 1.08999 * 109.46642 * 54.94333 * 15 14 13 29 29 H 1.09004 * 112.49863 * 45.33429 * 16 15 14 30 30 H 1.09001 * 113.14668 * 327.10711 * 17 16 15 31 31 H 1.08998 * 113.15232 * 96.59469 * 17 16 15 32 32 H 1.09007 * 113.14763 * 263.40369 * 19 16 15 33 33 H 1.08999 * 113.15482 * 32.88717 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.9340 -0.5373 0.7595 11 6 4.1226 -0.9884 -1.3943 12 6 5.1385 -2.0341 -0.9138 13 7 4.0991 -2.5466 -0.0010 14 6 4.6673 -2.8738 1.3135 15 6 3.5438 -3.2882 2.2659 16 6 4.1457 -3.7493 3.5947 17 6 4.5783 -5.2173 3.5822 18 16 4.1795 -5.3453 5.3483 19 6 3.0894 -4.0720 4.6540 20 1 -0.4850 0.8400 0.0004 21 1 4.5449 0.0036 -1.5545 22 1 3.4906 -1.3249 -2.2162 23 1 5.9951 -1.6017 -0.3967 24 1 5.4281 -2.7466 -1.6862 25 1 5.1802 -1.9999 1.7153 26 1 5.3762 -3.6951 1.2088 27 1 2.8841 -2.4385 2.4411 28 1 2.9742 -4.1048 1.8222 29 1 4.9235 -3.0764 3.9561 30 1 3.9464 -5.8449 2.9538 31 1 5.6395 -5.3496 3.3715 32 1 2.9044 -3.2457 5.3404 33 1 2.1700 -4.4785 4.2325 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261010731.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:11 Heat of formation + Delta-G solvation = 30.846578 kcal Electronic energy + Delta-G solvation = -13963.628789 eV Core-core repulsion = 11730.316967 eV Total energy + Delta-G solvation = -2233.311822 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.77639 -38.21687 -34.57382 -32.65760 -29.39561 -27.74403 -27.22755 -24.29327 -23.30253 -21.28459 -20.39535 -18.97635 -17.44185 -16.95666 -16.59631 -16.52515 -15.40661 -15.16436 -14.86331 -14.26187 -14.17358 -13.86506 -13.64738 -13.28788 -13.09975 -12.72227 -12.43020 -12.20791 -12.01951 -11.98925 -11.59405 -11.52460 -11.38437 -10.95360 -10.83124 -10.60985 -9.46778 -8.86385 -8.22361 -6.24209 0.82921 0.95801 1.37867 1.38295 1.47169 2.38314 3.08114 3.28353 3.42703 3.78390 3.99057 3.99526 4.23146 4.27703 4.40741 4.47236 4.48976 4.58109 4.65304 4.74617 4.77598 4.82980 4.96539 5.04506 5.10231 5.21456 5.34880 5.49681 5.63873 5.71411 6.37969 6.63371 6.80814 7.39999 8.94401 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.031382 B = 0.007081 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.019117 B = 3953.407005 C = 4495.000306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.013 3.987 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.244 1.244 7 C -0.487 4.487 8 H 0.033 0.967 9 C 0.131 3.869 10 H 0.038 0.962 11 C -0.160 4.160 12 C 0.007 3.993 13 N -0.487 5.487 14 C 0.028 3.972 15 C -0.089 4.089 16 C -0.078 4.078 17 C -0.056 4.056 18 S -0.358 6.358 19 C -0.068 4.068 20 H 0.264 0.736 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.038 0.962 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.574 -4.935 4.864 14.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.184 4.184 3 Si 0.759 3.241 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.168 1.168 7 C -0.525 4.525 8 H 0.051 0.949 9 C 0.022 3.978 10 H 0.056 0.944 11 C -0.198 4.198 12 C -0.121 4.121 13 N -0.209 5.209 14 C -0.100 4.100 15 C -0.129 4.129 16 C -0.098 4.098 17 C -0.204 4.204 18 S -0.132 6.132 19 C -0.216 4.216 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.090 0.910 23 H 0.096 0.904 24 H 0.108 0.892 25 H 0.056 0.944 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.135 0.865 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.119 0.881 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.387 -6.171 5.983 15.077 hybrid contribution -0.275 1.861 -0.551 1.960 sum 12.112 -4.310 5.432 13.957 Atomic orbital electron populations 1.70054 1.08174 1.27792 1.53251 1.25724 0.95311 1.02733 0.94640 0.85900 0.79646 0.79183 0.79341 1.19008 1.21672 1.16806 1.20972 0.90468 0.92653 1.48424 0.94891 1.21302 0.94427 0.88210 0.93880 0.94409 1.23389 0.98504 0.98579 0.99338 1.23678 0.94181 0.96928 0.97332 1.68882 1.17679 1.25402 1.08979 1.22583 0.96660 1.00401 0.90401 1.21305 0.97598 1.01123 0.92860 1.22437 0.97043 0.95782 0.94527 1.24456 1.06927 0.98625 0.90388 1.89010 1.50849 1.56862 1.16461 1.24418 1.00400 0.98066 0.98697 0.92721 0.91641 0.90976 0.90446 0.89165 0.94418 0.89362 0.93079 0.91996 0.86523 0.87239 0.86999 0.88119 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.52 13.96 21.44 0.30 -58.23 16 2 C 0.01 0.73 5.47 84.65 0.46 1.19 16 3 Si 0.93 42.41 26.93 68.60 1.85 44.26 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.24 -10.08 6.27 99.48 0.62 -9.46 16 7 C -0.49 -26.89 9.52 25.60 0.24 -26.65 16 8 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 9 C 0.13 5.74 1.74 41.44 0.07 5.81 16 10 H 0.04 1.67 6.09 -2.39 -0.01 1.65 16 11 C -0.16 -6.12 7.20 30.94 0.22 -5.89 16 12 C 0.01 0.23 7.71 83.56 0.64 0.88 16 13 N -0.49 -18.36 6.16 -906.48 -5.58 -23.94 16 14 C 0.03 0.85 4.75 86.31 0.41 1.26 16 15 C -0.09 -2.69 5.11 30.59 0.16 -2.53 16 16 C -0.08 -1.79 3.31 -10.77 -0.04 -1.83 16 17 C -0.06 -1.17 7.49 72.00 0.54 -0.63 16 18 S -0.36 -9.03 24.80 -56.49 -1.40 -10.43 16 19 C -0.07 -1.62 7.50 71.99 0.54 -1.08 16 20 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 21 H 0.07 2.28 7.91 -2.39 -0.02 2.26 16 22 H 0.07 2.99 8.12 -2.39 -0.02 2.97 16 23 H 0.08 2.05 7.85 -2.39 -0.02 2.03 16 24 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.04 1.09 7.55 -2.39 -0.02 1.07 16 26 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.05 1.91 7.88 -2.39 -0.02 1.89 16 28 H 0.06 2.01 7.89 -2.39 -0.02 1.99 16 29 H 0.12 2.48 8.13 -2.39 -0.02 2.46 16 30 H 0.11 2.24 7.95 -2.39 -0.02 2.22 16 31 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.10 2.56 8.12 -2.39 -0.02 2.54 16 Total: -1.00 -63.58 278.54 -0.60 -64.18 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.98 Total: 13.63 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 3.26 Total: -29.48 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -5.28 Total: -82.16 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.85 Total: 44.26 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.40 Total: -10.43 kcal Total: -63.58 -0.60 -64.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261010731.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.026 kcal (2) G-P(sol) polarization free energy of solvation -63.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds