Wall clock time and date at job start Mon Mar 30 2020 03:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00172 * 2 1 4 4 H 1.48505 * 109.47063 * 273.73931 * 3 2 1 5 5 H 1.48494 * 109.47145 * 33.74043 * 3 2 1 6 6 H 1.48503 * 109.47362 * 153.74346 * 3 2 1 7 7 C 1.38813 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99949 * 345.96836 * 7 2 1 9 9 N 1.36936 * 120.00533 * 165.97698 * 7 2 1 10 10 C 1.46499 * 119.99433 * 306.41117 * 9 7 2 11 11 C 1.53001 * 117.50150 * 2.44524 * 10 9 7 12 12 C 1.52994 * 60.00207 * 252.51513 * 11 10 9 13 13 C 1.46495 * 120.00269 * 126.12978 * 9 7 2 14 14 H 1.09002 * 109.39117 * 180.28033 * 13 9 7 15 15 C 1.52587 * 109.39011 * 300.07687 * 13 9 7 16 16 C 1.52578 * 110.72330 * 190.82456 * 15 13 9 17 17 C 1.53100 * 109.95764 * 289.32471 * 16 15 13 18 18 S 1.81750 * 108.83878 * 63.02708 * 17 16 15 19 19 C 1.53092 * 109.39115 * 60.47741 * 13 9 7 20 20 H 0.96999 * 119.99712 * 0.02562 * 1 2 3 21 21 H 1.09001 * 115.55131 * 148.16133 * 10 9 7 22 22 H 1.08997 * 117.50032 * 0.02562 * 11 10 9 23 23 H 1.08999 * 117.49886 * 145.02375 * 11 10 9 24 24 H 1.09000 * 117.50154 * 252.50909 * 12 11 10 25 25 H 1.09003 * 117.52219 * 107.47965 * 12 11 10 26 26 H 1.08995 * 109.22482 * 311.14584 * 15 13 9 27 27 H 1.09000 * 109.22128 * 70.54988 * 15 13 9 28 28 H 1.09003 * 109.39473 * 49.47452 * 16 15 13 29 29 H 1.09005 * 109.39248 * 169.17664 * 16 15 13 30 30 H 1.09007 * 109.57804 * 182.83563 * 17 16 15 31 31 H 1.09001 * 109.57845 * 303.09060 * 17 16 15 32 32 H 1.09007 * 109.57357 * 296.63115 * 19 13 9 33 33 H 1.09000 * 109.58002 * 57.01436 * 19 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4187 2.0921 -1.3971 5 1 1.4895 2.6285 0.7776 6 1 3.5851 1.4186 0.6194 7 6 2.0102 -1.2021 0.0005 8 1 1.4944 -2.1234 0.2277 9 7 3.3490 -1.2201 -0.2868 10 6 3.8411 -0.6063 -1.5227 11 6 2.8173 0.0884 -2.4228 12 6 3.4239 -1.2508 -2.8462 13 6 4.2898 -1.8475 0.6445 14 1 5.3022 -1.7593 0.2505 15 6 4.2095 -1.1442 1.9963 16 6 5.3523 -1.5879 2.9045 17 6 5.1330 -3.0359 3.3508 18 16 5.1666 -4.1127 1.8870 19 6 3.9343 -3.3277 0.8060 20 1 -0.4850 0.8401 -0.0004 21 1 4.8393 -0.1722 -1.4669 22 1 1.7777 0.0893 -2.0952 23 1 3.1419 0.9800 -2.9592 24 1 4.1476 -1.2403 -3.6612 25 1 2.7837 -2.1316 -2.7973 26 1 4.2695 -0.0665 1.8443 27 1 3.2591 -1.3873 2.4714 28 1 6.2949 -1.5153 2.3620 29 1 5.3902 -0.9409 3.7810 30 1 5.9257 -3.3301 4.0389 31 1 4.1670 -3.1225 3.8482 32 1 2.9440 -3.4189 1.2525 33 1 3.9432 -3.8141 -0.1695 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261168974.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:26 Heat of formation + Delta-G solvation = 43.008348 kcal Electronic energy + Delta-G solvation = -14649.092564 eV Core-core repulsion = 12416.308116 eV Total energy + Delta-G solvation = -2232.784448 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -37.94091 -35.80038 -32.75428 -31.78954 -28.76123 -26.65118 -24.55348 -22.04834 -21.64870 -20.25436 -19.53607 -16.78419 -16.40125 -15.24336 -14.60872 -14.47639 -14.07452 -13.52929 -13.23854 -12.98019 -12.72978 -12.45080 -12.11276 -11.54511 -11.20457 -10.87572 -10.80336 -10.74243 -10.44605 -10.26320 -9.98227 -9.82745 -9.50173 -9.27118 -9.12238 -8.45724 -7.40214 -6.52070 -6.06283 -3.74759 2.21069 2.93067 3.33922 3.44118 3.49228 4.46660 4.78106 4.82808 5.10391 5.19037 5.29593 5.42497 5.61214 5.74067 5.82124 5.88542 5.97992 6.04429 6.09245 6.15886 6.20075 6.45849 6.48790 6.50812 6.57453 6.83917 6.97129 7.02760 7.25937 8.03990 8.42849 8.93488 9.58107 10.06460 11.03278 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.031161 B = 0.010771 C = 0.009642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.344506 B = 2598.867225 C = 2903.255554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.883 3.117 4 H -0.270 1.270 5 H -0.307 1.307 6 H -0.266 1.266 7 C -0.282 4.282 8 H 0.072 0.928 9 N -0.568 5.568 10 C 0.110 3.890 11 C -0.200 4.200 12 C -0.212 4.212 13 C 0.184 3.816 14 H 0.062 0.938 15 C -0.138 4.138 16 C -0.119 4.119 17 C -0.074 4.074 18 S -0.301 6.301 19 C -0.071 4.071 20 H 0.265 0.735 21 H 0.087 0.913 22 H 0.120 0.880 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.635 -1.984 2.516 10.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.712 3.288 4 H -0.196 1.196 5 H -0.235 1.235 6 H -0.191 1.191 7 C -0.411 4.411 8 H 0.089 0.911 9 N -0.287 5.287 10 C 0.002 3.998 11 C -0.238 4.238 12 C -0.253 4.253 13 C 0.076 3.924 14 H 0.080 0.920 15 C -0.177 4.177 16 C -0.158 4.158 17 C -0.222 4.222 18 S -0.076 6.076 19 C -0.220 4.220 20 H 0.075 0.925 21 H 0.105 0.895 22 H 0.138 0.862 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.077 -2.825 2.366 10.730 hybrid contribution -0.545 1.996 0.147 2.074 sum 9.532 -0.829 2.513 9.893 Atomic orbital electron populations 1.69850 1.06271 1.27089 1.50547 1.25836 0.94978 0.98567 0.95283 0.86926 0.80323 0.83467 0.78097 1.19600 1.23505 1.19052 1.18500 0.82394 0.93238 1.46957 0.91083 1.43684 1.03879 1.65599 1.15586 1.21308 0.95082 0.99551 0.83847 1.23560 1.01863 0.94349 1.04038 1.23368 1.04375 0.97285 1.00247 1.20513 0.92870 0.89035 0.89935 0.91962 1.21989 0.97939 1.01560 0.96216 1.21776 1.00183 0.94008 0.99845 1.23360 1.04960 0.97083 0.96795 1.86531 1.58172 1.43549 1.19336 1.24049 0.98657 0.99569 0.99764 0.92538 0.89486 0.86177 0.90656 0.91006 0.89225 0.91187 0.91121 0.91321 0.91668 0.88767 0.90096 0.89387 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.16 13.97 55.49 0.78 -25.39 16 2 C 0.06 1.52 3.79 -17.43 -0.07 1.45 16 3 Si 0.88 21.39 24.42 -169.99 -4.15 17.24 16 4 H -0.27 -6.30 5.59 56.52 0.32 -5.98 16 5 H -0.31 -7.71 7.11 56.52 0.40 -7.31 16 6 H -0.27 -6.27 5.80 56.52 0.33 -5.95 16 7 C -0.28 -7.34 8.03 -15.06 -0.12 -7.46 16 8 H 0.07 2.06 7.45 -52.48 -0.39 1.66 16 9 N -0.57 -12.66 2.04 -158.33 -0.32 -12.98 16 10 C 0.11 2.29 4.99 -67.93 -0.34 1.96 16 11 C -0.20 -4.32 6.49 -26.73 -0.17 -4.49 16 12 C -0.21 -4.16 10.37 -26.73 -0.28 -4.43 16 13 C 0.18 3.54 2.49 -68.10 -0.17 3.37 16 14 H 0.06 1.14 7.84 -51.93 -0.41 0.74 16 15 C -0.14 -2.54 4.69 -27.16 -0.13 -2.66 16 16 C -0.12 -1.72 5.75 -26.90 -0.15 -1.87 16 17 C -0.07 -1.02 6.45 37.21 0.24 -0.78 16 18 S -0.30 -4.86 22.33 -107.50 -2.40 -7.26 16 19 C -0.07 -1.30 5.62 37.20 0.21 -1.09 16 20 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 21 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 22 H 0.12 3.01 4.94 -51.93 -0.26 2.75 16 23 H 0.08 1.49 7.69 -51.93 -0.40 1.09 16 24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 26 H 0.07 1.40 6.73 -51.93 -0.35 1.05 16 27 H 0.07 1.42 7.91 -51.93 -0.41 1.01 16 28 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.76 7.38 -51.92 -0.38 1.38 16 33 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 263.24 15.07 3.97 3.97 Total: -1.00 -27.36 263.24 -8.38 -35.74 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.27 Total: 4.69 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -0.98 Total: -16.01 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.45 Total: -38.37 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.15 Total: 17.24 kcal Atomic # 16 Polarization: -4.86 SS G_CDS: -2.40 Total: -7.26 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.36 -8.38 -35.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168974.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.752 kcal (2) G-P(sol) polarization free energy of solvation -27.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds