Wall clock time and date at job start Mon Mar 30 2020 03:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00172 * 2 1 4 4 H 1.48505 * 109.47063 * 273.73931 * 3 2 1 5 5 H 1.48494 * 109.47145 * 33.74043 * 3 2 1 6 6 H 1.48503 * 109.47362 * 153.74346 * 3 2 1 7 7 C 1.38813 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99949 * 345.96836 * 7 2 1 9 9 N 1.36936 * 120.00533 * 165.97698 * 7 2 1 10 10 C 1.46499 * 119.99433 * 306.41117 * 9 7 2 11 11 C 1.53001 * 117.50150 * 2.44524 * 10 9 7 12 12 C 1.52994 * 60.00207 * 252.51513 * 11 10 9 13 13 C 1.46495 * 120.00269 * 126.12978 * 9 7 2 14 14 H 1.09002 * 109.39117 * 180.28033 * 13 9 7 15 15 C 1.52587 * 109.39011 * 300.07687 * 13 9 7 16 16 C 1.52578 * 110.72330 * 190.82456 * 15 13 9 17 17 C 1.53100 * 109.95764 * 289.32471 * 16 15 13 18 18 S 1.81750 * 108.83878 * 63.02708 * 17 16 15 19 19 C 1.53092 * 109.39115 * 60.47741 * 13 9 7 20 20 H 0.96999 * 119.99712 * 0.02562 * 1 2 3 21 21 H 1.09001 * 115.55131 * 148.16133 * 10 9 7 22 22 H 1.08997 * 117.50032 * 0.02562 * 11 10 9 23 23 H 1.08999 * 117.49886 * 145.02375 * 11 10 9 24 24 H 1.09000 * 117.50154 * 252.50909 * 12 11 10 25 25 H 1.09003 * 117.52219 * 107.47965 * 12 11 10 26 26 H 1.08995 * 109.22482 * 311.14584 * 15 13 9 27 27 H 1.09000 * 109.22128 * 70.54988 * 15 13 9 28 28 H 1.09003 * 109.39473 * 49.47452 * 16 15 13 29 29 H 1.09005 * 109.39248 * 169.17664 * 16 15 13 30 30 H 1.09007 * 109.57804 * 182.83563 * 17 16 15 31 31 H 1.09001 * 109.57845 * 303.09060 * 17 16 15 32 32 H 1.09007 * 109.57357 * 296.63115 * 19 13 9 33 33 H 1.09000 * 109.58002 * 57.01436 * 19 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4187 2.0921 -1.3971 5 1 1.4895 2.6285 0.7776 6 1 3.5851 1.4186 0.6194 7 6 2.0102 -1.2021 0.0005 8 1 1.4944 -2.1234 0.2277 9 7 3.3490 -1.2201 -0.2868 10 6 3.8411 -0.6063 -1.5227 11 6 2.8173 0.0884 -2.4228 12 6 3.4239 -1.2508 -2.8462 13 6 4.2898 -1.8475 0.6445 14 1 5.3022 -1.7593 0.2505 15 6 4.2095 -1.1442 1.9963 16 6 5.3523 -1.5879 2.9045 17 6 5.1330 -3.0359 3.3508 18 16 5.1666 -4.1127 1.8870 19 6 3.9343 -3.3277 0.8060 20 1 -0.4850 0.8401 -0.0004 21 1 4.8393 -0.1722 -1.4669 22 1 1.7777 0.0893 -2.0952 23 1 3.1419 0.9800 -2.9592 24 1 4.1476 -1.2403 -3.6612 25 1 2.7837 -2.1316 -2.7973 26 1 4.2695 -0.0665 1.8443 27 1 3.2591 -1.3873 2.4714 28 1 6.2949 -1.5153 2.3620 29 1 5.3902 -0.9409 3.7810 30 1 5.9257 -3.3301 4.0389 31 1 4.1670 -3.1225 3.8482 32 1 2.9440 -3.4189 1.2525 33 1 3.9432 -3.8141 -0.1695 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261168974.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:25 Heat of formation + Delta-G solvation = 27.700049 kcal Electronic energy + Delta-G solvation = -14649.756382 eV Core-core repulsion = 12416.308116 eV Total energy + Delta-G solvation = -2233.448266 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.60468 -37.28450 -34.52102 -33.54089 -30.42830 -28.02930 -26.47133 -23.41252 -23.29913 -21.85640 -21.21972 -18.68420 -17.83896 -16.79210 -16.44878 -15.95493 -15.55518 -15.11011 -15.03592 -14.41123 -14.22541 -13.90748 -13.74644 -13.28324 -12.93040 -12.55529 -12.36367 -12.17780 -12.14677 -11.73826 -11.68071 -11.46820 -11.26548 -10.85060 -10.68909 -10.41164 -8.77678 -8.34915 -8.11268 -5.83440 0.91231 1.41325 1.44773 1.55994 1.61116 2.45832 3.01531 3.16846 3.34912 3.83235 3.98983 4.08348 4.21823 4.22887 4.32597 4.38914 4.48757 4.55767 4.68932 4.82946 4.86843 4.91068 4.98765 5.08377 5.14469 5.31053 5.34759 5.51611 5.53511 5.98683 6.28177 7.08296 7.57934 8.07983 8.96818 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.031161 B = 0.010771 C = 0.009642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.344506 B = 2598.867225 C = 2903.255554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.011 3.989 3 Si 0.938 3.062 4 H -0.253 1.253 5 H -0.322 1.322 6 H -0.250 1.250 7 C -0.262 4.262 8 H 0.026 0.974 9 N -0.579 5.579 10 C 0.100 3.900 11 C -0.215 4.215 12 C -0.193 4.193 13 C 0.182 3.818 14 H 0.083 0.917 15 C -0.133 4.133 16 C -0.110 4.110 17 C -0.071 4.071 18 S -0.292 6.292 19 C -0.067 4.067 20 H 0.262 0.738 21 H 0.120 0.880 22 H 0.081 0.919 23 H 0.098 0.902 24 H 0.111 0.889 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.128 0.872 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.983 -1.478 2.691 13.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.187 4.187 3 Si 0.765 3.235 4 H -0.178 1.178 5 H -0.252 1.252 6 H -0.174 1.174 7 C -0.391 4.391 8 H 0.043 0.957 9 N -0.299 5.299 10 C -0.007 4.007 11 C -0.253 4.253 12 C -0.233 4.233 13 C 0.075 3.925 14 H 0.101 0.899 15 C -0.173 4.173 16 C -0.149 4.149 17 C -0.218 4.218 18 S -0.066 6.066 19 C -0.217 4.217 20 H 0.071 0.929 21 H 0.137 0.863 22 H 0.099 0.901 23 H 0.117 0.883 24 H 0.129 0.871 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.146 0.854 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.466 -2.343 2.532 13.901 hybrid contribution -1.587 1.704 0.106 2.331 sum 11.878 -0.639 2.637 12.184 Atomic orbital electron populations 1.69980 1.08113 1.27592 1.53464 1.26378 0.95294 1.01622 0.95391 0.86042 0.79397 0.79307 0.78752 1.17750 1.25157 1.17421 1.18161 0.84141 0.91433 1.45407 0.95665 1.43796 1.02907 1.66058 1.17144 1.21622 0.96028 0.99681 0.83341 1.23467 0.99973 0.96415 1.05438 1.23338 1.03985 0.95243 1.00770 1.20698 0.92847 0.88992 0.89929 0.89936 1.21906 0.98454 1.00521 0.96371 1.21709 0.98702 0.94494 0.99973 1.23496 1.06123 0.96251 0.95977 1.86490 1.56203 1.44107 1.19798 1.23780 0.98273 0.99598 1.00066 0.92859 0.86257 0.90114 0.88349 0.87116 0.91563 0.92601 0.93979 0.89853 0.89289 0.85438 0.90441 0.92395 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.89 13.97 21.65 0.30 -57.59 16 2 C 0.01 0.62 3.79 84.86 0.32 0.94 16 3 Si 0.94 44.26 24.42 68.60 1.67 45.93 16 4 H -0.25 -11.11 5.59 99.48 0.56 -10.56 16 5 H -0.32 -15.93 7.11 99.48 0.71 -15.22 16 6 H -0.25 -11.07 5.80 99.48 0.58 -10.49 16 7 C -0.26 -14.11 8.03 84.03 0.67 -13.44 16 8 H 0.03 1.59 7.45 -2.91 -0.02 1.57 16 9 N -0.58 -25.55 2.04 -654.84 -1.33 -26.88 16 10 C 0.10 3.94 4.99 44.99 0.22 4.17 16 11 C -0.21 -8.90 6.49 30.59 0.20 -8.70 16 12 C -0.19 -7.15 10.37 30.59 0.32 -6.83 16 13 C 0.18 6.78 2.49 44.89 0.11 6.89 16 14 H 0.08 2.77 7.84 -2.39 -0.02 2.75 16 15 C -0.13 -4.71 4.69 30.32 0.14 -4.57 16 16 C -0.11 -2.78 5.75 30.49 0.18 -2.60 16 17 C -0.07 -1.73 6.45 72.02 0.46 -1.27 16 18 S -0.29 -8.79 22.33 -56.49 -1.26 -10.05 16 19 C -0.07 -2.47 5.62 72.01 0.40 -2.06 16 20 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 21 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 22 H 0.08 4.07 4.94 -2.39 -0.01 4.06 16 23 H 0.10 3.59 7.69 -2.39 -0.02 3.57 16 24 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 25 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.06 2.12 6.73 -2.39 -0.02 2.11 16 27 H 0.04 1.70 7.91 -2.39 -0.02 1.68 16 28 H 0.08 1.94 8.06 -2.39 -0.02 1.92 16 29 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.13 2.39 8.14 -2.38 -0.02 2.37 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 2.43 7.38 -2.38 -0.02 2.42 16 33 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -61.46 263.24 3.21 -58.25 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.79 Total: 17.82 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: 3.04 Total: -27.48 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -1.03 Total: -84.47 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.67 Total: 45.93 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.26 Total: -10.05 kcal Total: -61.46 3.21 -58.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168974.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.953 kcal (2) G-P(sol) polarization free energy of solvation -61.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds