Wall clock time and date at job start Mon Mar 30 2020 03:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46994 * 2 1 4 4 C 1.50700 * 109.47181 * 239.99996 * 2 1 3 5 5 H 1.08000 * 120.00260 * 245.46406 * 4 2 1 6 6 C 1.37878 * 119.99628 * 65.46365 * 4 2 1 7 7 N 1.31515 * 120.00180 * 9.59681 * 6 4 2 8 8 Si 1.86799 * 119.99819 * 189.59926 * 6 4 2 9 9 H 1.48499 * 109.47421 * 84.99315 * 8 6 4 10 10 H 1.48506 * 109.47326 * 204.99370 * 8 6 4 11 11 H 1.48503 * 109.47192 * 324.99445 * 8 6 4 12 12 C 1.50701 * 109.47286 * 120.00277 * 2 1 3 13 13 C 1.36209 * 120.24321 * 59.99765 * 12 2 1 14 14 C 1.39327 * 121.08486 * 179.97438 * 13 12 2 15 15 C 1.36256 * 121.02156 * 359.97438 * 14 13 12 16 16 C 1.40184 * 119.47772 * 359.97438 * 15 14 13 17 17 C 1.40698 * 122.22929 * 180.02562 * 16 15 14 18 18 C 1.36166 * 118.66957 * 179.97438 * 17 16 15 19 19 N 1.32608 * 121.88317 * 0.02562 * 18 17 16 20 20 C 1.31243 * 122.78266 * 0.02562 * 19 18 17 21 21 C 1.40328 * 120.24069 * 239.98130 * 12 2 1 22 22 H 1.09008 * 109.46846 * 303.25676 * 1 2 3 23 23 H 1.09001 * 109.47213 * 63.25369 * 1 2 3 24 24 H 1.08999 * 109.47223 * 183.25461 * 1 2 3 25 25 H 0.96999 * 119.99950 * 179.97438 * 7 6 4 26 26 H 1.08005 * 119.45418 * 0.25553 * 13 12 2 27 27 H 1.07996 * 119.48704 * 180.02562 * 14 13 12 28 28 H 1.07999 * 120.25938 * 180.02562 * 15 14 13 29 29 H 1.07998 * 120.66649 * 0.02562 * 17 16 15 30 30 H 1.08003 * 119.06044 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.06403 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5786 -1.6371 -1.1339 6 6 1.7946 -0.1773 -2.4796 7 7 1.3001 1.0360 -2.5935 8 14 2.1749 -1.1783 -4.0101 9 1 1.0223 -2.0606 -4.3237 10 1 2.4220 -0.2619 -5.1523 11 1 3.3829 -2.0084 -3.7712 12 6 2.0324 -0.7105 1.2304 13 6 1.7064 -2.0145 1.4509 14 6 2.1615 -2.6884 2.5821 15 6 2.9478 -2.0635 3.5029 16 6 3.3044 -0.7218 3.3086 17 6 4.1135 -0.0206 4.2215 18 6 4.4158 1.2811 3.9605 19 7 3.9697 1.9000 2.8759 20 6 3.2107 1.3097 1.9825 21 6 2.8398 -0.0335 2.1573 22 1 -0.3633 0.5636 0.8594 23 1 -0.3634 0.4625 -0.9177 24 1 -0.3633 -1.0260 0.0583 25 1 1.1332 1.4112 -3.4722 26 1 1.0885 -2.5358 0.7346 27 1 1.8877 -3.7224 2.7310 28 1 3.2941 -2.5979 4.3752 29 1 4.4879 -0.5054 5.1109 30 1 5.0367 1.8252 4.6569 31 1 2.8723 1.8558 1.1144 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261183501.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:31 Heat of formation + Delta-G solvation = 39.747645 kcal Electronic energy + Delta-G solvation = -14976.448132 eV Core-core repulsion = 12608.078338 eV Total energy + Delta-G solvation = -2368.369794 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.35510 -37.09353 -34.71102 -32.29359 -30.79706 -30.27847 -28.07172 -25.17756 -23.77099 -23.13275 -22.38209 -19.53147 -17.39074 -16.64191 -16.56448 -15.69280 -14.75512 -14.22900 -13.94465 -13.75518 -13.36087 -13.03383 -12.54178 -12.15845 -11.84847 -11.56062 -11.41552 -11.04261 -10.95647 -10.85176 -10.40609 -10.26356 -9.56646 -9.45579 -9.08297 -8.92674 -8.54111 -8.40862 -7.37184 -6.11844 -4.14702 0.89804 1.42402 2.48417 3.26721 3.33821 3.36424 3.60257 4.36726 4.63378 4.85230 4.99816 5.21907 5.24863 5.35278 5.45928 5.59933 5.76649 5.85797 6.03876 6.23966 6.34778 6.58756 6.59347 6.67182 6.86102 6.93049 7.00666 7.13449 7.17426 7.45891 7.60008 7.80544 7.88121 8.25445 8.44248 8.86888 9.48868 10.96599 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.031132 B = 0.008417 C = 0.007538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.181763 B = 3325.875741 C = 3713.738861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.064 3.936 3 H 0.049 0.951 4 C -0.513 4.513 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.891 3.109 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.010 3.990 13 C -0.138 4.138 14 C -0.082 4.082 15 C -0.155 4.155 16 C -0.021 4.021 17 C -0.173 4.173 18 C 0.069 3.931 19 N -0.508 5.508 20 C 0.165 3.835 21 C -0.118 4.118 22 H 0.015 0.985 23 H 0.070 0.930 24 H 0.032 0.968 25 H 0.263 0.737 26 H 0.127 0.873 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.128 0.872 30 H 0.143 0.857 31 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.778 -3.876 10.017 10.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.046 3.954 3 H 0.067 0.933 4 C -0.551 4.551 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.008 3.992 13 C -0.156 4.156 14 C -0.101 4.101 15 C -0.173 4.173 16 C -0.026 4.026 17 C -0.193 4.193 18 C -0.073 4.073 19 N -0.217 5.217 20 C -0.005 4.005 21 C -0.120 4.120 22 H 0.034 0.966 23 H 0.089 0.911 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.145 0.855 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.145 0.855 30 H 0.161 0.839 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.048 -2.859 9.898 10.504 hybrid contribution 0.019 -1.529 -0.712 1.687 sum 2.067 -4.388 9.185 10.387 Atomic orbital electron populations 1.21758 0.97535 0.99022 1.00165 1.18031 0.92711 0.96393 0.88305 0.93346 1.21028 1.36239 1.08159 0.89675 0.92306 1.24938 0.95063 0.94638 0.98964 1.69946 1.44478 1.13783 1.24034 0.86624 0.78797 0.80153 0.82591 1.20476 1.21226 1.19929 1.20565 0.90525 0.93919 0.94184 1.20801 1.02304 0.95011 0.97492 1.20980 0.95832 0.99336 0.93956 1.20666 1.02301 0.93705 1.00675 1.18144 0.96139 0.94369 0.93915 1.21737 1.01055 0.96215 1.00278 1.22062 0.98151 0.92391 0.94733 1.67493 1.11631 1.39409 1.03122 1.23595 0.89908 0.91044 0.95985 1.19078 1.01065 0.95975 0.95867 0.96628 0.91074 0.94845 0.92730 0.85483 0.86543 0.86291 0.85455 0.83925 0.81102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.93 37.16 0.33 -2.52 16 2 C 0.06 1.51 2.23 -92.92 -0.21 1.30 16 3 H 0.05 1.22 5.59 -51.93 -0.29 0.93 16 4 C -0.51 -13.38 8.17 -34.44 -0.28 -13.66 16 5 H 0.06 1.54 7.55 -52.49 -0.40 1.15 16 6 C 0.07 1.76 5.17 -17.82 -0.09 1.67 16 7 N -0.88 -24.29 12.16 55.43 0.67 -23.62 16 8 Si 0.89 20.65 29.55 -169.99 -5.02 15.63 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.01 0.21 4.76 -104.57 -0.50 -0.29 16 13 C -0.14 -2.61 8.53 -39.91 -0.34 -2.95 16 14 C -0.08 -1.30 9.95 -39.89 -0.40 -1.70 16 15 C -0.16 -2.42 9.81 -39.56 -0.39 -2.81 16 16 C -0.02 -0.36 5.75 -106.81 -0.61 -0.98 16 17 C -0.17 -2.64 9.88 -39.40 -0.39 -3.03 16 18 C 0.07 1.10 11.07 -17.96 -0.20 0.90 16 19 N -0.51 -9.52 10.30 -13.15 -0.14 -9.65 16 20 C 0.16 3.27 10.65 -16.97 -0.18 3.09 16 21 C -0.12 -2.36 5.74 -106.86 -0.61 -2.97 16 22 H 0.01 0.31 8.14 -51.92 -0.42 -0.12 16 23 H 0.07 1.74 6.84 -51.93 -0.36 1.39 16 24 H 0.03 0.70 7.27 -51.93 -0.38 0.32 16 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.13 2.37 7.49 -52.48 -0.39 1.98 16 27 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 29 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 31 H 0.17 3.43 6.02 -52.49 -0.32 3.12 16 LS Contribution 263.42 15.07 3.97 3.97 Total: -1.00 -28.14 263.42 -7.76 -35.90 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -3.38 Total: 1.70 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -3.87 Total: -23.93 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.54 Total: -33.27 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.14 -7.76 -35.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261183501.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.649 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds