Wall clock time and date at job start Mon Mar 30 2020 03:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46994 * 2 1 4 4 C 1.50700 * 109.47181 * 239.99996 * 2 1 3 5 5 H 1.08000 * 120.00260 * 245.46406 * 4 2 1 6 6 C 1.37878 * 119.99628 * 65.46365 * 4 2 1 7 7 N 1.31515 * 120.00180 * 9.59681 * 6 4 2 8 8 Si 1.86799 * 119.99819 * 189.59926 * 6 4 2 9 9 H 1.48499 * 109.47421 * 84.99315 * 8 6 4 10 10 H 1.48506 * 109.47326 * 204.99370 * 8 6 4 11 11 H 1.48503 * 109.47192 * 324.99445 * 8 6 4 12 12 C 1.50701 * 109.47286 * 120.00277 * 2 1 3 13 13 C 1.36209 * 120.24321 * 59.99765 * 12 2 1 14 14 C 1.39327 * 121.08486 * 179.97438 * 13 12 2 15 15 C 1.36256 * 121.02156 * 359.97438 * 14 13 12 16 16 C 1.40184 * 119.47772 * 359.97438 * 15 14 13 17 17 C 1.40698 * 122.22929 * 180.02562 * 16 15 14 18 18 C 1.36166 * 118.66957 * 179.97438 * 17 16 15 19 19 N 1.32608 * 121.88317 * 0.02562 * 18 17 16 20 20 C 1.31243 * 122.78266 * 0.02562 * 19 18 17 21 21 C 1.40328 * 120.24069 * 239.98130 * 12 2 1 22 22 H 1.09008 * 109.46846 * 303.25676 * 1 2 3 23 23 H 1.09001 * 109.47213 * 63.25369 * 1 2 3 24 24 H 1.08999 * 109.47223 * 183.25461 * 1 2 3 25 25 H 0.96999 * 119.99950 * 179.97438 * 7 6 4 26 26 H 1.08005 * 119.45418 * 0.25553 * 13 12 2 27 27 H 1.07996 * 119.48704 * 180.02562 * 14 13 12 28 28 H 1.07999 * 120.25938 * 180.02562 * 15 14 13 29 29 H 1.07998 * 120.66649 * 0.02562 * 17 16 15 30 30 H 1.08003 * 119.06044 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.06403 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5786 -1.6371 -1.1339 6 6 1.7946 -0.1773 -2.4796 7 7 1.3001 1.0360 -2.5935 8 14 2.1749 -1.1783 -4.0101 9 1 1.0223 -2.0606 -4.3237 10 1 2.4220 -0.2619 -5.1523 11 1 3.3829 -2.0084 -3.7712 12 6 2.0324 -0.7105 1.2304 13 6 1.7064 -2.0145 1.4509 14 6 2.1615 -2.6884 2.5821 15 6 2.9478 -2.0635 3.5029 16 6 3.3044 -0.7218 3.3086 17 6 4.1135 -0.0206 4.2215 18 6 4.4158 1.2811 3.9605 19 7 3.9697 1.9000 2.8759 20 6 3.2107 1.3097 1.9825 21 6 2.8398 -0.0335 2.1573 22 1 -0.3633 0.5636 0.8594 23 1 -0.3634 0.4625 -0.9177 24 1 -0.3633 -1.0260 0.0583 25 1 1.1332 1.4112 -3.4722 26 1 1.0885 -2.5358 0.7346 27 1 1.8877 -3.7224 2.7310 28 1 3.2941 -2.5979 4.3752 29 1 4.4879 -0.5054 5.1109 30 1 5.0367 1.8252 4.6569 31 1 2.8723 1.8558 1.1144 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261183501.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:31 Heat of formation + Delta-G solvation = 24.810499 kcal Electronic energy + Delta-G solvation = -14977.095856 eV Core-core repulsion = 12608.078338 eV Total energy + Delta-G solvation = -2369.017518 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.71252 -38.50606 -36.36895 -34.01231 -32.22882 -31.78435 -29.56407 -27.18020 -25.14851 -24.51172 -23.94714 -21.10730 -18.78257 -18.34056 -17.99863 -17.23567 -16.58961 -15.54231 -15.36903 -15.16205 -14.75610 -14.64237 -14.21768 -13.62490 -13.50729 -13.22904 -12.88992 -12.70596 -12.61368 -12.50078 -12.22871 -12.04127 -11.18349 -11.15784 -10.71811 -10.50623 -10.28132 -9.90664 -8.74397 -8.13538 -6.23059 -0.44780 0.07754 1.12785 1.41375 1.42742 1.51361 2.25307 2.43731 3.15449 3.26113 3.55133 3.77400 3.98873 4.00796 4.18616 4.37065 4.43759 4.59530 4.68022 4.83936 4.88793 4.98397 5.09483 5.16898 5.27991 5.31963 5.49694 5.57622 5.66897 5.79080 5.92884 6.03966 6.12927 6.31643 6.84293 7.09353 7.43037 8.93494 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.031132 B = 0.008417 C = 0.007538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.181763 B = 3325.875741 C = 3713.738861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.064 3.936 3 H 0.020 0.980 4 C -0.522 4.522 5 H 0.052 0.948 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.950 3.050 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.272 1.272 12 C -0.028 4.028 13 C -0.138 4.138 14 C -0.086 4.086 15 C -0.135 4.135 16 C -0.041 4.041 17 C -0.151 4.151 18 C 0.053 3.947 19 N -0.520 5.520 20 C 0.134 3.866 21 C -0.134 4.134 22 H 0.026 0.974 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.262 0.738 26 H 0.121 0.879 27 H 0.156 0.844 28 H 0.165 0.835 29 H 0.176 0.824 30 H 0.181 0.819 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.847 -6.136 12.475 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.046 3.954 3 H 0.038 0.962 4 C -0.560 4.560 5 H 0.070 0.930 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.775 3.225 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.030 4.030 13 C -0.156 4.156 14 C -0.105 4.105 15 C -0.152 4.152 16 C -0.046 4.046 17 C -0.170 4.170 18 C -0.090 4.090 19 N -0.229 5.229 20 C -0.036 4.036 21 C -0.136 4.136 22 H 0.045 0.955 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.139 0.861 27 H 0.174 0.826 28 H 0.183 0.817 29 H 0.193 0.807 30 H 0.198 0.802 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.112 -5.124 12.354 13.732 hybrid contribution -0.249 -0.834 -1.322 1.583 sum 2.864 -5.958 11.033 12.862 Atomic orbital electron populations 1.21600 0.97167 0.99443 0.99177 1.17842 0.93059 0.95096 0.89399 0.96176 1.21314 1.35768 1.07901 0.91005 0.92951 1.25671 0.95224 0.95480 1.01721 1.70066 1.45754 1.15095 1.24452 0.85698 0.78756 0.78790 0.79221 1.19609 1.21159 1.19658 1.20288 0.93342 0.95121 0.94203 1.20931 1.01880 0.94180 0.98630 1.21315 0.95543 1.01011 0.92633 1.21186 1.00132 0.92574 1.01351 1.18570 0.96821 0.95680 0.93535 1.22220 0.98573 0.95609 1.00571 1.22718 0.98503 0.93460 0.94295 1.67439 1.11273 1.40302 1.03893 1.23278 0.92145 0.91666 0.96512 1.19165 1.01403 0.96019 0.97014 0.95471 0.93769 0.93806 0.92848 0.86077 0.82623 0.81735 0.80710 0.80210 0.83513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.93 71.98 0.64 -4.81 16 2 C 0.06 3.20 2.23 -12.29 -0.03 3.18 16 3 H 0.02 1.11 5.59 -2.39 -0.01 1.09 16 4 C -0.52 -28.23 8.17 25.60 0.21 -28.02 16 5 H 0.05 2.82 7.55 -2.91 -0.02 2.80 16 6 C 0.02 1.01 5.17 84.65 0.44 1.45 16 7 N -0.91 -52.45 12.16 21.45 0.26 -52.19 16 8 Si 0.95 43.20 29.55 68.60 2.03 45.23 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 10 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 C -0.03 -1.19 4.76 -19.83 -0.09 -1.28 16 13 C -0.14 -5.10 8.53 22.06 0.19 -4.91 16 14 C -0.09 -2.42 9.95 22.07 0.22 -2.20 16 15 C -0.13 -3.56 9.81 22.28 0.22 -3.34 16 16 C -0.04 -1.32 5.75 -21.28 -0.12 -1.45 16 17 C -0.15 -3.94 9.88 22.39 0.22 -3.72 16 18 C 0.05 1.54 11.07 84.09 0.93 2.47 16 19 N -0.52 -19.54 10.30 -195.52 -2.01 -21.56 16 20 C 0.13 5.57 10.65 85.32 0.91 6.48 16 21 C -0.13 -5.40 5.74 -21.31 -0.12 -5.52 16 22 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 23 H 0.04 2.27 6.84 -2.39 -0.02 2.25 16 24 H 0.04 1.89 7.27 -2.39 -0.02 1.88 16 25 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 26 H 0.12 4.49 7.49 -2.91 -0.02 4.47 16 27 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 28 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.18 2.90 8.06 -2.91 -0.02 2.88 16 30 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 31 H 0.15 6.59 6.02 -2.91 -0.02 6.58 16 Total: -1.00 -63.65 263.42 5.01 -58.63 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 1.13 Total: 11.57 kcal Atomic # 6 Polarization: -45.30 SS G_CDS: 3.61 Total: -41.69 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -1.75 Total: -73.75 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -63.65 5.01 -58.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261183501.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.443 kcal (2) G-P(sol) polarization free energy of solvation -63.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds